RNA–Protein interactions for RNA: ENST00000620514.1

HMGN3-203, Transcript of high mobility group nucleosomal binding domain 3, humanhuman

TSL 3 BASIC

Gene HMGN3, Length 1,010 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGN3-203ENST00000620514 ARHGAP5Q13017 1502 aa27.72■■■□□ 2.03
HMGN3-203ENST00000620514 ARID4BQ4LE39 1312 aaPredicted RBP27.71■■■□□ 2.03
HMGN3-203ENST00000620514 YEATS2Q9ULM3 1422 aa27.71■■■□□ 2.03
HMGN3-203ENST00000620514 ZFYVE16Q7Z3T8 1539 aa27.69■■■□□ 2.02
HMGN3-203ENST00000620514 ADAMTSL3P82987 1691 aa27.68■■■□□ 2.02
HMGN3-203ENST00000620514 CEP162Q5TB80 1403 aa27.68■■■□□ 2.02
HMGN3-203ENST00000620514 BCORL1Q5H9F3 1711 aa27.67■■■□□ 2.02
HMGN3-203ENST00000620514 CDC42BPBQ9Y5S2 1711 aa27.67■■■□□ 2.02
HMGN3-203ENST00000620514 MAGI2Q86UL8 1455 aa27.66■■■□□ 2.02
HMGN3-203ENST00000620514 PREX2Q70Z35 1606 aa27.63■■■□□ 2.01
HMGN3-203ENST00000620514 SIGLEC1Q9BZZ2 1709 aa27.62■■■□□ 2.01
HMGN3-203ENST00000620514 LOC105371045A0A1W2PR82 267 aa27.62■■■□□ 2.01
HMGN3-203ENST00000620514 PTPRMP28827 1452 aa27.6■■■□□ 2.01
HMGN3-203ENST00000620514 AFAP1Q8N556 730 aa27.6■■■□□ 2.01
HMGN3-203ENST00000620514 MADDQ8WXG6 1647 aa27.59■■■□□ 2.01
HMGN3-203ENST00000620514 HECW2Q9P2P5 1572 aa27.59■■■□□ 2.01
HMGN3-203ENST00000620514 CDC42BPAQ5VT25 1732 aa27.58■■■□□ 2.01
HMGN3-203ENST00000620514 ZNF518AQ6AHZ1 1483 aa27.58■■■□□ 2.01
HMGN3-203ENST00000620514 ARHGEF12Q9NZN5 1544 aa27.56■■■□□ 2
HMGN3-203ENST00000620514 ABCC1P33527 1531 aa27.55■■■□□ 2
HMGN3-203ENST00000620514 KDM5CP41229 1560 aa27.55■■■□□ 2
HMGN3-203ENST00000620514 ATP10AO60312 1499 aa27.54■■■□□ 2
HMGN3-203ENST00000620514 TRAPPC8Q9Y2L5 1435 aa27.53■■■□□ 2
HMGN3-203ENST00000620514 GPATCH8Q9UKJ3 1502 aaKnown RBP27.52■■■□□ 2
HMGN3-203ENST00000620514 MTUS2Q5JR59 1369 aa27.52■■■□□ 2
HMGN3-203ENST00000620514 MLECQ14165 292 aa27.51■■□□□ 1.99
HMGN3-203ENST00000620514 C9orf84Q5VXU9 1444 aa27.5■■□□□ 1.99
HMGN3-203ENST00000620514 RIMS1Q86UR5 1692 aaKnown RBP27.5■■□□□ 1.99
HMGN3-203ENST00000620514 ITSN2Q9NZM3 1697 aa27.5■■□□□ 1.99
HMGN3-203ENST00000620514 ZNF777Q9ULD5 760 aaPredicted RBP27.5■■□□□ 1.99
HMGN3-203ENST00000620514 MYT1LQ9UL68 1186 aa27.49■■□□□ 1.99
HMGN3-203ENST00000620514 SAMD9LQ8IVG5 1584 aa27.47■■□□□ 1.99
HMGN3-203ENST00000620514 CCNB3Q8WWL7 1395 aa27.46■■□□□ 1.99
HMGN3-203ENST00000620514 MLH3Q9UHC1 1453 aa27.45■■□□□ 1.99
HMGN3-203ENST00000620514 DIP2CQ9Y2E4 1556 aa27.45■■□□□ 1.99
HMGN3-203ENST00000620514 EHBP1L1Q8N3D4 1523 aa27.43■■□□□ 1.98
HMGN3-203ENST00000620514 CFDP1Q9UEE9 299 aaPredicted RBP27.43■■□□□ 1.98
HMGN3-203ENST00000620514 ABCA6Q8N139 1617 aa27.42■■□□□ 1.98
HMGN3-203ENST00000620514 SYCP2Q9BX26 1530 aa27.41■■□□□ 1.98
HMGN3-203ENST00000620514 PLPPR3Q6T4P5 718 aa27.41■■□□□ 1.98
HMGN3-203ENST00000620514 HNRNPMP52272 730 aaKnown RBP eCLIP27.4■■□□□ 1.98
HMGN3-203ENST00000620514 TIAM1Q13009 1591 aa27.39■■□□□ 1.97
HMGN3-203ENST00000620514 FER1L4A9Z1Z3 1794 aa27.38■■□□□ 1.97
HMGN3-203ENST00000620514 VPS8Q8N3P4 1428 aa27.37■■□□□ 1.97
HMGN3-203ENST00000620514 KIDINS220Q9ULH0 1771 aa27.37■■□□□ 1.97
HMGN3-203ENST00000620514 REREQ9P2R6 1566 aa27.35■■□□□ 1.97
HMGN3-203ENST00000620514 KIAA1107Q9UPP5 1409 aa27.33■■□□□ 1.97
HMGN3-203ENST00000620514 ZNF644Q9H582 1327 aaPredicted RBP27.33■■□□□ 1.97
HMGN3-203ENST00000620514 PLEKHH2Q8IVE3 1493 aa27.32■■□□□ 1.96
HMGN3-203ENST00000620514 SPAG9O60271 1321 aaKnown RBP27.31■■□□□ 1.96
HMGN3-203ENST00000620514 LMTK3Q96Q04 1460 aa27.3■■□□□ 1.96
HMGN3-203ENST00000620514 NCOA2Q15596 1464 aa27.29■■□□□ 1.96
HMGN3-203ENST00000620514 AGLP35573 1532 aa27.28■■□□□ 1.96
HMGN3-203ENST00000620514 SUPT6HQ7KZ85 1726 aaKnown RBP27.27■■□□□ 1.96
HMGN3-203ENST00000620514 CEBPAP49715 358 aaPredicted RBP27.25■■□□□ 1.95
HMGN3-203ENST00000620514 ATP7AQ04656 1500 aa27.25■■□□□ 1.95
HMGN3-203ENST00000620514 INO80Q9ULG1 1556 aaPredicted RBP27.23■■□□□ 1.95
HMGN3-203ENST00000620514 MBD5Q9P267 1494 aa27.23■■□□□ 1.95
HMGN3-203ENST00000620514 LRRC9Q6ZRR7 1453 aa27.22■■□□□ 1.95
HMGN3-203ENST00000620514 HSPA2P54652 639 aa27.19■■□□□ 1.94
HMGN3-203ENST00000620514 KANK4Q5T7N3 995 aaPredicted RBP27.19■■□□□ 1.94
HMGN3-203ENST00000620514 CAMSAP2Q08AD1 1489 aa27.16■■□□□ 1.94
HMGN3-203ENST00000620514 MAP3K1Q13233 1512 aa27.16■■□□□ 1.94
HMGN3-203ENST00000620514 A2MP01023 1474 aa27.15■■□□□ 1.94
HMGN3-203ENST00000620514 PLXNC1O60486 1568 aa27.14■■□□□ 1.93
HMGN3-203ENST00000620514 ESF1Q9H501 851 aaKnown RBP27.13■■□□□ 1.93
HMGN3-203ENST00000620514 C3P01024 1663 aa27.11■■□□□ 1.93
HMGN3-203ENST00000620514 CCDC141Q6ZP82 1450 aa27.1■■□□□ 1.93
HMGN3-203ENST00000620514 PREX1Q8TCU6 1659 aa27.09■■□□□ 1.93
HMGN3-203ENST00000620514 RTEL1-TNFRSF6BF6WH68 1400 aa27.08■■□□□ 1.93
HMGN3-203ENST00000620514 ADGBQ8N7X0 1667 aa27.08■■□□□ 1.92
HMGN3-203ENST00000620514 CNTLNQ9NXG0 1405 aa27.07■■□□□ 1.92
HMGN3-203ENST00000620514 ILDR1Q86SU0 546 aaPredicted RBP27.05■■□□□ 1.92
HMGN3-203ENST00000620514 GGT6Q6P531 493 aa27.04■■□□□ 1.92
HMGN3-203ENST00000620514 RSPH4AQ5TD94 716 aa27.03■■□□□ 1.92
HMGN3-203ENST00000620514 ARHGEF5Q12774 1597 aa27.02■■□□□ 1.92
HMGN3-203ENST00000620514 UHRF1BP1Q6BDS2 1440 aa27.02■■□□□ 1.92
HMGN3-203ENST00000620514 MYOM3Q5VTT5 1437 aa27.01■■□□□ 1.91
HMGN3-203ENST00000620514 DHX29Q7Z478 1369 aaKnown RBP27.01■■□□□ 1.91
HMGN3-203ENST00000620514 ZMYM3Q14202 1370 aa27■■□□□ 1.91
HMGN3-203ENST00000620514 APLP2Q06481 763 aa27■■□□□ 1.91
HMGN3-203ENST00000620514 SETD1BQ9UPS6 1966 aaKnown RBP27■■□□□ 1.91
HMGN3-203ENST00000620514 MROH2AA6NES4 1674 aa26.99■■□□□ 1.91
HMGN3-203ENST00000620514 CLTCQ00610 1675 aaKnown RBP26.99■■□□□ 1.91
HMGN3-203ENST00000620514 MIA2Q96PC5 1412 aa26.97■■□□□ 1.91
HMGN3-203ENST00000620514 TSPY4P0CV99 314 aa26.96■■□□□ 1.91
HMGN3-203ENST00000620514 TSPY10P0CW01 314 aa26.96■■□□□ 1.91
HMGN3-203ENST00000620514 KIF3BO15066 747 aa26.93■■□□□ 1.9
HMGN3-203ENST00000620514 NPATQ14207 1427 aa26.91■■□□□ 1.9
HMGN3-203ENST00000620514 PPP6R1Q9UPN7 881 aa26.9■■□□□ 1.9
HMGN3-203ENST00000620514 MAST1Q9Y2H9 1570 aa26.89■■□□□ 1.9
HMGN3-203ENST00000620514 STRCQ7RTU9 1775 aa26.88■■□□□ 1.89
HMGN3-203ENST00000620514 PTPRKQ15262 1439 aa26.88■■□□□ 1.89
HMGN3-203ENST00000620514 PTPN23Q9H3S7 1636 aa26.84■■□□□ 1.89
HMGN3-203ENST00000620514 FGD6Q6ZV73 1430 aa26.81■■□□□ 1.88
HMGN3-203ENST00000620514 KDM5DQ9BY66 1539 aa26.8■■□□□ 1.88
HMGN3-203ENST00000620514 ABCC5O15440 1437 aa26.8■■□□□ 1.88
HMGN3-203ENST00000620514 MYO3AQ8NEV4 1616 aa26.79■■□□□ 1.88
HMGN3-203ENST00000620514 WASHC2CQ9Y4E1 1318 aa26.78■■□□□ 1.88
HMGN3-203ENST00000620514 TCOF1Q13428 1488 aaKnown RBP26.77■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms