RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 SCAPERQ9BY12 1400 aa31.13■■■□□ 2.57
CDX1-202ENST00000616154 ILDR1Q86SU0 546 aaPredicted RBP31.13■■■□□ 2.57
CDX1-202ENST00000616154 TROQ12816 1431 aaPredicted RBP31.12■■■□□ 2.57
CDX1-202ENST00000616154 YEATS2Q9ULM3 1422 aa31.12■■■□□ 2.57
CDX1-202ENST00000616154 RIMS1Q86UR5 1692 aaKnown RBP31.12■■■□□ 2.57
CDX1-202ENST00000616154 SIGLEC1Q9BZZ2 1709 aa31.12■■■□□ 2.57
CDX1-202ENST00000616154 CLIP1P30622 1438 aa31.07■■■□□ 2.56
CDX1-202ENST00000616154 EFCAB2Q5VUJ9 269 aa31.07■■■□□ 2.56
CDX1-202ENST00000616154 PCF11O94913 1555 aaKnown RBP31.03■■■□□ 2.56
CDX1-202ENST00000616154 CASKIN1Q8WXD9 1431 aa31.02■■■□□ 2.56
CDX1-202ENST00000616154 ARHGAP5Q13017 1502 aa31.01■■■□□ 2.56
CDX1-202ENST00000616154 CCDC18Q5T9S5 1454 aa31■■■□□ 2.55
CDX1-202ENST00000616154 LMTK3Q96Q04 1460 aa30.98■■■□□ 2.55
CDX1-202ENST00000616154 ATP10AO60312 1499 aa30.98■■■□□ 2.55
CDX1-202ENST00000616154 ZNF518AQ6AHZ1 1483 aa30.98■■■□□ 2.55
CDX1-202ENST00000616154 CDC42BPBQ9Y5S2 1711 aa30.97■■■□□ 2.55
CDX1-202ENST00000616154 FER1L4A9Z1Z3 1794 aa30.97■■■□□ 2.55
CDX1-202ENST00000616154 KDM5CP41229 1560 aa30.96■■■□□ 2.55
CDX1-202ENST00000616154 C9orf84Q5VXU9 1444 aa30.95■■■□□ 2.55
CDX1-202ENST00000616154 PREX2Q70Z35 1606 aa30.94■■■□□ 2.54
CDX1-202ENST00000616154 FYCO1Q9BQS8 1478 aa30.91■■■□□ 2.54
CDX1-202ENST00000616154 ARHGEF12Q9NZN5 1544 aa30.9■■■□□ 2.54
CDX1-202ENST00000616154 MLECQ14165 292 aa30.89■■■□□ 2.54
CDX1-202ENST00000616154 AFAP1Q8N556 730 aa30.86■■■□□ 2.53
CDX1-202ENST00000616154 ABCC1P33527 1531 aa30.85■■■□□ 2.53
CDX1-202ENST00000616154 CDC42BPAQ5VT25 1732 aa30.85■■■□□ 2.53
CDX1-202ENST00000616154 DIP2CQ9Y2E4 1556 aa30.84■■■□□ 2.53
CDX1-202ENST00000616154 ITSN2Q9NZM3 1697 aa30.84■■■□□ 2.53
CDX1-202ENST00000616154 REREQ9P2R6 1566 aa30.82■■■□□ 2.52
CDX1-202ENST00000616154 PLPPR3Q6T4P5 718 aa30.81■■■□□ 2.52
CDX1-202ENST00000616154 MLH3Q9UHC1 1453 aa30.81■■■□□ 2.52
CDX1-202ENST00000616154 ABCA6Q8N139 1617 aa30.8■■■□□ 2.52
CDX1-202ENST00000616154 TRAPPC8Q9Y2L5 1435 aa30.77■■■□□ 2.52
CDX1-202ENST00000616154 HSPA2P54652 639 aa30.73■■■□□ 2.51
CDX1-202ENST00000616154 MYT1LQ9UL68 1186 aa30.73■■■□□ 2.51
CDX1-202ENST00000616154 PREX1Q8TCU6 1659 aa30.72■■■□□ 2.51
CDX1-202ENST00000616154 KIDINS220Q9ULH0 1771 aa30.71■■■□□ 2.51
CDX1-202ENST00000616154 AGLP35573 1532 aa30.7■■■□□ 2.51
CDX1-202ENST00000616154 FBXO41Q8TF61 875 aa30.69■■■□□ 2.5
CDX1-202ENST00000616154 SAMD9LQ8IVG5 1584 aa30.68■■■□□ 2.5
CDX1-202ENST00000616154 GPATCH8Q9UKJ3 1502 aaKnown RBP30.68■■■□□ 2.5
CDX1-202ENST00000616154 CEBPAP49715 358 aaPredicted RBP30.63■■■□□ 2.49
CDX1-202ENST00000616154 SYCP2Q9BX26 1530 aa30.63■■■□□ 2.49
CDX1-202ENST00000616154 SETD1BQ9UPS6 1966 aaKnown RBP30.63■■■□□ 2.49
CDX1-202ENST00000616154 C3P01024 1663 aa30.6■■■□□ 2.49
CDX1-202ENST00000616154 ZNF777Q9ULD5 760 aaPredicted RBP30.59■■■□□ 2.49
CDX1-202ENST00000616154 PLEKHH2Q8IVE3 1493 aa30.56■■■□□ 2.48
CDX1-202ENST00000616154 KIAA1107Q9UPP5 1409 aa30.56■■■□□ 2.48
CDX1-202ENST00000616154 MTUS2Q5JR59 1369 aa30.55■■■□□ 2.48
CDX1-202ENST00000616154 CCNB3Q8WWL7 1395 aa30.55■■■□□ 2.48
CDX1-202ENST00000616154 UHRF1BP1Q6BDS2 1440 aa30.54■■■□□ 2.48
CDX1-202ENST00000616154 CFDP1Q9UEE9 299 aaPredicted RBP30.52■■■□□ 2.48
CDX1-202ENST00000616154 INO80Q9ULG1 1556 aaPredicted RBP30.52■■■□□ 2.48
CDX1-202ENST00000616154 SPAG9O60271 1321 aaKnown RBP30.52■■■□□ 2.48
CDX1-202ENST00000616154 ATP7AQ04656 1500 aa30.52■■■□□ 2.48
CDX1-202ENST00000616154 EHBP1L1Q8N3D4 1523 aa30.51■■■□□ 2.47
CDX1-202ENST00000616154 CNTLNQ9NXG0 1405 aa30.5■■■□□ 2.47
CDX1-202ENST00000616154 HNRNPMP52272 730 aaKnown RBP eCLIP30.5■■■□□ 2.47
CDX1-202ENST00000616154 ESF1Q9H501 851 aaKnown RBP30.5■■■□□ 2.47
CDX1-202ENST00000616154 STRCQ7RTU9 1775 aa30.5■■■□□ 2.47
CDX1-202ENST00000616154 TIAM1Q13009 1591 aa30.49■■■□□ 2.47
CDX1-202ENST00000616154 CEP162Q5TB80 1403 aa30.49■■■□□ 2.47
CDX1-202ENST00000616154 SUPT6HQ7KZ85 1726 aaKnown RBP30.48■■■□□ 2.47
CDX1-202ENST00000616154 MROH2AA6NES4 1674 aa30.47■■■□□ 2.47
CDX1-202ENST00000616154 PLXNC1O60486 1568 aa30.46■■■□□ 2.47
CDX1-202ENST00000616154 A2MP01023 1474 aa30.41■■■□□ 2.46
CDX1-202ENST00000616154 ADGBQ8N7X0 1667 aa30.39■■■□□ 2.46
CDX1-202ENST00000616154 CERKQ8TCT0 537 aa30.39■■■□□ 2.46
CDX1-202ENST00000616154 DMRT2Q9Y5R5 561 aa30.38■■■□□ 2.45
CDX1-202ENST00000616154 MBD5Q9P267 1494 aa30.36■■■□□ 2.45
CDX1-202ENST00000616154 NPATQ14207 1427 aa30.36■■■□□ 2.45
CDX1-202ENST00000616154 CLTCQ00610 1675 aaKnown RBP30.35■■■□□ 2.45
CDX1-202ENST00000616154 ZNF644Q9H582 1327 aaPredicted RBP30.34■■■□□ 2.45
CDX1-202ENST00000616154 ZMYM3Q14202 1370 aa30.33■■■□□ 2.45
CDX1-202ENST00000616154 PTPRTO14522 1441 aa30.31■■■□□ 2.44
CDX1-202ENST00000616154 NCOA2Q15596 1464 aa30.29■■■□□ 2.44
CDX1-202ENST00000616154 RTEL1-TNFRSF6BF6WH68 1400 aa30.29■■■□□ 2.44
CDX1-202ENST00000616154 NCOA1Q15788 1441 aa30.26■■■□□ 2.44
CDX1-202ENST00000616154 CAMSAP2Q08AD1 1489 aa30.24■■■□□ 2.43
CDX1-202ENST00000616154 ZNF142P52746 1687 aaPredicted RBP30.23■■■□□ 2.43
CDX1-202ENST00000616154 CCDC141Q6ZP82 1450 aa30.23■■■□□ 2.43
CDX1-202ENST00000616154 GGT6Q6P531 493 aa30.22■■■□□ 2.43
CDX1-202ENST00000616154 PPP6R1Q9UPN7 881 aa30.22■■■□□ 2.43
CDX1-202ENST00000616154 MYO3AQ8NEV4 1616 aa30.22■■■□□ 2.43
CDX1-202ENST00000616154 CAMSAP1Q5T5Y3 1602 aa30.22■■■□□ 2.43
CDX1-202ENST00000616154 PTPRKQ15262 1439 aa30.21■■■□□ 2.43
CDX1-202ENST00000616154 VPS8Q8N3P4 1428 aa30.19■■■□□ 2.42
CDX1-202ENST00000616154 DHX29Q7Z478 1369 aaKnown RBP30.19■■■□□ 2.42
CDX1-202ENST00000616154 ARHGEF5Q12774 1597 aa30.16■■■□□ 2.42
CDX1-202ENST00000616154 RSPH4AQ5TD94 716 aa30.16■■■□□ 2.42
CDX1-202ENST00000616154 CEP170BQ9Y4F5 1589 aaPredicted RBP30.15■■■□□ 2.42
CDX1-202ENST00000616154 LRRC9Q6ZRR7 1453 aa30.14■■■□□ 2.42
CDX1-202ENST00000616154 LOC105371045A0A1W2PR82 267 aa30.14■■■□□ 2.42
CDX1-202ENST00000616154 LTBP4Q8N2S1 1624 aa30.13■■■□□ 2.41
CDX1-202ENST00000616154 FAM135AQ9P2D6 1515 aa30.11■■■□□ 2.41
CDX1-202ENST00000616154 PLA2R1Q13018 1463 aa30.1■■■□□ 2.41
CDX1-202ENST00000616154 MAP3K1Q13233 1512 aa30.08■■■□□ 2.41
CDX1-202ENST00000616154 KDM5DQ9BY66 1539 aa30.06■■■□□ 2.4
CDX1-202ENST00000616154 KIF3BO15066 747 aa30.05■■■□□ 2.4
CDX1-202ENST00000616154 TCOF1Q13428 1488 aaKnown RBP30.04■■■□□ 2.4
Retrieved 100 of 20,778 RNA–protein pairs in 11 ms