RNA–Protein interactions for RNA: ENST00000616053.4

TCF4-248, Transcript of transcription factor 4, humanhuman

TSL 5 BASIC

Gene TCF4, Length 8,140 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCF4-248ENST00000616053 KIAA1211Q6ZU35 1233 aa16.08■□□□□ 0.16
TCF4-248ENST00000616053 DDX10Q13206 875 aaKnown RBP16.08■□□□□ 0.16
TCF4-248ENST00000616053 SRPK2P78362 688 aaKnown RBP16.08■□□□□ 0.16
TCF4-248ENST00000616053 TOMM22Q9NS69 142 aa16.06■□□□□ 0.16
TCF4-248ENST00000616053 HSP90B1P14625 803 aaKnown RBP16.06■□□□□ 0.16
TCF4-248ENST00000616053 NAP1L5Q96NT1 182 aaPredicted RBP16.05■□□□□ 0.16
TCF4-248ENST00000616053 FRAT1Q92837 279 aaPredicted RBP16.05■□□□□ 0.16
TCF4-248ENST00000616053 CCAR1Q8IX12 1150 aaKnown RBP16.05■□□□□ 0.16
TCF4-248ENST00000616053 GOLGA6L1Q8N7Z2 621 aa16.05■□□□□ 0.16
TCF4-248ENST00000616053 TPM4P67936 248 aa16.03■□□□□ 0.16
TCF4-248ENST00000616053 FBXW7Q969H0 707 aa16.03■□□□□ 0.16
TCF4-248ENST00000616053 PPM1FP49593 454 aaPredicted RBP16.02■□□□□ 0.15
TCF4-248ENST00000616053 PLEKHD1A6NEE1 506 aa16.01■□□□□ 0.15
TCF4-248ENST00000616053 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.01■□□□□ 0.15
TCF4-248ENST00000616053 R3HCC1Q9Y3T6 440 aaKnown RBP16.01■□□□□ 0.15
TCF4-248ENST00000616053 PES1O00541 588 aaKnown RBP16■□□□□ 0.15
TCF4-248ENST00000616053 NOL10Q9BSC4 688 aaKnown RBP16■□□□□ 0.15
TCF4-248ENST00000616053 CCDC43Q96MW1 224 aaKnown RBP15.99■□□□□ 0.15
TCF4-248ENST00000616053 HTATSF1O43719 755 aaKnown RBP15.99■□□□□ 0.15
TCF4-248ENST00000616053 ACIN1Q9UKV3 1341 aaKnown RBP15.98■□□□□ 0.15
TCF4-248ENST00000616053 MS4A1P11836 297 aa15.98■□□□□ 0.15
TCF4-248ENST00000616053 SAMD1Q6SPF0 538 aaPredicted RBP15.98■□□□□ 0.15
TCF4-248ENST00000616053 USP35Q9P2H5 1018 aa15.98■□□□□ 0.15
TCF4-248ENST00000616053 PPP1R1BQ9UD71 204 aaPredicted RBP15.97■□□□□ 0.15
TCF4-248ENST00000616053 WDR70Q9NW82 654 aa15.97■□□□□ 0.15
TCF4-248ENST00000616053 PATL2C9JE40 543 aaKnown RBP15.97■□□□□ 0.15
TCF4-248ENST00000616053 IRX6P78412 446 aaPredicted RBP15.96■□□□□ 0.15
TCF4-248ENST00000616053 TPM3P06753 285 aa15.96■□□□□ 0.15
TCF4-248ENST00000616053 AMOTL1Q8IY63 956 aa15.96■□□□□ 0.15
TCF4-248ENST00000616053 EVA1CP58658 441 aa15.96■□□□□ 0.15
TCF4-248ENST00000616053 APBB1O00213 710 aa15.96■□□□□ 0.15
TCF4-248ENST00000616053 WWC2Q6AWC2 1192 aa15.95■□□□□ 0.14
TCF4-248ENST00000616053 SF3B2Q13435 895 aaKnown RBP15.94■□□□□ 0.14
TCF4-248ENST00000616053 GPATCH3Q96I76 525 aa15.92■□□□□ 0.14
TCF4-248ENST00000616053 SAFB2Q14151 953 aaKnown RBP eCLIP15.92■□□□□ 0.14
TCF4-248ENST00000616053 TNNT3P45378 269 aaPredicted RBP15.92■□□□□ 0.14
TCF4-248ENST00000616053 MTUS2Q5JR59 1369 aa15.92■□□□□ 0.14
TCF4-248ENST00000616053 SENP3-EIF4A1A0A087X0R7 540 aa15.91■□□□□ 0.14
TCF4-248ENST00000616053 MSNP26038 577 aaKnown RBP15.91■□□□□ 0.14
TCF4-248ENST00000616053 TPD52L1Q16890 204 aaPredicted RBP15.91■□□□□ 0.14
TCF4-248ENST00000616053 RGS3P49796 1198 aa15.9■□□□□ 0.14
TCF4-248ENST00000616053 RRP12Q5JTH9 1297 aaKnown RBP15.9■□□□□ 0.14
TCF4-248ENST00000616053 HSCBQ8IWL3 235 aa15.89■□□□□ 0.13
TCF4-248ENST00000616053 TSR1Q2NL82 804 aaKnown RBP15.89■□□□□ 0.13
TCF4-248ENST00000616053 ODF2Q5BJF6 829 aa15.88■□□□□ 0.13
TCF4-248ENST00000616053 CCDC97Q96F63 343 aaPredicted RBP15.88■□□□□ 0.13
TCF4-248ENST00000616053 DHX16O60231 1041 aaKnown RBP15.88■□□□□ 0.13
TCF4-248ENST00000616053 CALRP27797 417 aaKnown RBP15.88■□□□□ 0.13
TCF4-248ENST00000616053 TPM2P07951 284 aa15.88■□□□□ 0.13
TCF4-248ENST00000616053 TMEM132AQ24JP5 1023 aa15.87■□□□□ 0.13
TCF4-248ENST00000616053 AKAP17AQ02040 695 aaKnown RBP15.87■□□□□ 0.13
TCF4-248ENST00000616053 AK7Q96M32 723 aa15.87■□□□□ 0.13
TCF4-248ENST00000616053 CHMP4AQ9BY43 222 aa15.86■□□□□ 0.13
TCF4-248ENST00000616053 RRP7BPQ9NSQ0 103 aa15.85■□□□□ 0.13
TCF4-248ENST00000616053 CFAP44Q96MT7 982 aa15.85■□□□□ 0.13
TCF4-248ENST00000616053 STK26Q9P289 416 aa15.84■□□□□ 0.13
TCF4-248ENST00000616053 CT47A1Q5JQC4 288 aaPredicted RBP15.83■□□□□ 0.12
TCF4-248ENST00000616053 VPS37DQ86XT2 251 aa15.82■□□□□ 0.12
TCF4-248ENST00000616053 HDAC5Q9UQL6 1122 aa15.82■□□□□ 0.12
TCF4-248ENST00000616053 SYTL4Q96C24 671 aaPredicted RBP15.81■□□□□ 0.12
TCF4-248ENST00000616053 SETQ01105 290 aaPredicted RBP15.81■□□□□ 0.12
TCF4-248ENST00000616053 EID1Q9Y6B2 187 aa15.81■□□□□ 0.12
TCF4-248ENST00000616053 KANK1Q14678 1352 aa15.8■□□□□ 0.12
TCF4-248ENST00000616053 HDGFL2Q7Z4V5 671 aaPredicted RBP15.8■□□□□ 0.12
TCF4-248ENST00000616053 SPAG9O60271 1321 aaKnown RBP15.8■□□□□ 0.12
TCF4-248ENST00000616053 SPDYE4A6NLX3 237 aa15.79■□□□□ 0.12
TCF4-248ENST00000616053 ZFYVE27Q5T4F4 411 aa15.79■□□□□ 0.12
TCF4-248ENST00000616053 STK31Q9BXU1 1019 aa15.79■□□□□ 0.12
TCF4-248ENST00000616053 SF3A1Q15459 793 aaKnown RBP15.78■□□□□ 0.12
TCF4-248ENST00000616053 CARD11Q9BXL7 1154 aa15.78■□□□□ 0.12
TCF4-248ENST00000616053 PCMTD1Q96MG8 357 aaPredicted RBP15.78■□□□□ 0.12
TCF4-248ENST00000616053 SPRYD3Q8NCJ5 442 aa15.77■□□□□ 0.11
TCF4-248ENST00000616053 CSRNP3Q8WYN3 585 aa15.76■□□□□ 0.11
TCF4-248ENST00000616053 RBM33Q96EV2 1170 aaKnown RBP15.76■□□□□ 0.11
TCF4-248ENST00000616053 CC2D1BQ5T0F9 858 aaKnown RBP15.76■□□□□ 0.11
TCF4-248ENST00000616053 HIRIP3Q9BW71 556 aaPredicted RBP15.76■□□□□ 0.11
TCF4-248ENST00000616053 TRIM6-TRIM34B2RNG4 842 aa15.76■□□□□ 0.11
TCF4-248ENST00000616053 MAP3K9P80192 1104 aa15.75■□□□□ 0.11
TCF4-248ENST00000616053 NGDNQ8NEJ9 315 aaKnown RBP15.75■□□□□ 0.11
TCF4-248ENST00000616053 CCDC70Q6NSX1 233 aa15.75■□□□□ 0.11
TCF4-248ENST00000616053 SYNE3Q6ZMZ3 975 aa15.75■□□□□ 0.11
TCF4-248ENST00000616053 TMEM87AQ8NBN3 555 aa15.74■□□□□ 0.11
TCF4-248ENST00000616053 PAXIP1Q6ZW49 1069 aaPredicted RBP15.74■□□□□ 0.11
TCF4-248ENST00000616053 LTV1Q96GA3 475 aaPredicted RBP15.74■□□□□ 0.11
TCF4-248ENST00000616053 CFDP1Q9UEE9 299 aaPredicted RBP15.74■□□□□ 0.11
TCF4-248ENST00000616053 MORC1Q86VD1 984 aa15.73■□□□□ 0.11
TCF4-248ENST00000616053 WASHC2AQ641Q2 1341 aa15.73■□□□□ 0.11
TCF4-248ENST00000616053 TPM1P09493 284 aa15.73■□□□□ 0.11
TCF4-248ENST00000616053 GGT6Q6P531 493 aa15.73■□□□□ 0.11
TCF4-248ENST00000616053 CCDC47Q96A33 483 aaKnown RBP15.73■□□□□ 0.11
TCF4-248ENST00000616053 ERCC6Q03468 1493 aa15.72■□□□□ 0.11
TCF4-248ENST00000616053 KIF3AQ9Y496 699 aa15.71■□□□□ 0.11
TCF4-248ENST00000616053 CALD1Q05682 793 aaKnown RBP15.71■□□□□ 0.11
TCF4-248ENST00000616053 ARID3AQ99856 593 aa15.71■□□□□ 0.11
TCF4-248ENST00000616053 IKQ13123 557 aaPredicted RBP15.7■□□□□ 0.1
TCF4-248ENST00000616053 SYAP1Q96A49 352 aaPredicted RBP15.7■□□□□ 0.1
TCF4-248ENST00000616053 SLC4A3P48751 1232 aa15.7■□□□□ 0.1
TCF4-248ENST00000616053 IBSPP21815 317 aaPredicted RBP15.69■□□□□ 0.1
TCF4-248ENST00000616053 AMPHP49418 695 aa15.69■□□□□ 0.1
TCF4-248ENST00000616053 CCAR2Q8N163 923 aaKnown RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 35.6 ms