RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 CDC42BPBQ9Y5S2 1711 aa25.98■■□□□ 1.75
CCDC28A-202ENST00000611852 EFCAB2Q5VUJ9 269 aa25.98■■□□□ 1.75
CCDC28A-202ENST00000611852 ARHGAP5Q13017 1502 aa25.97■■□□□ 1.75
CCDC28A-202ENST00000611852 GPATCH8Q9UKJ3 1502 aaKnown RBP25.96■■□□□ 1.75
CCDC28A-202ENST00000611852 SUPT6HQ7KZ85 1726 aaKnown RBP25.96■■□□□ 1.75
CCDC28A-202ENST00000611852 CCNB3Q8WWL7 1395 aa25.95■■□□□ 1.74
CCDC28A-202ENST00000611852 NCOA2Q15596 1464 aa25.95■■□□□ 1.74
CCDC28A-202ENST00000611852 ADGRL1O94910 1474 aa25.9■■□□□ 1.74
CCDC28A-202ENST00000611852 RAPGEF3O95398 923 aa25.88■■□□□ 1.73
CCDC28A-202ENST00000611852 DENND4BO75064 1496 aaPredicted RBP25.87■■□□□ 1.73
CCDC28A-202ENST00000611852 SCAPERQ9BY12 1400 aa25.87■■□□□ 1.73
CCDC28A-202ENST00000611852 CFDP1Q9UEE9 299 aaPredicted RBP25.87■■□□□ 1.73
CCDC28A-202ENST00000611852 ITSN2Q9NZM3 1697 aa25.86■■□□□ 1.73
CCDC28A-202ENST00000611852 FRMPD1Q5SYB0 1578 aa25.85■■□□□ 1.73
CCDC28A-202ENST00000611852 RICTORQ6R327 1708 aa25.83■■□□□ 1.73
CCDC28A-202ENST00000611852 ZNF777Q9ULD5 760 aaPredicted RBP25.83■■□□□ 1.72
CCDC28A-202ENST00000611852 SAMD9LQ8IVG5 1584 aa25.82■■□□□ 1.72
CCDC28A-202ENST00000611852 POGZQ7Z3K3 1410 aa25.81■■□□□ 1.72
CCDC28A-202ENST00000611852 ABCC1P33527 1531 aa25.81■■□□□ 1.72
CCDC28A-202ENST00000611852 ARHGEF12Q9NZN5 1544 aa25.79■■□□□ 1.72
CCDC28A-202ENST00000611852 MYOM3Q5VTT5 1437 aa25.76■■□□□ 1.71
CCDC28A-202ENST00000611852 ZNF644Q9H582 1327 aaPredicted RBP25.75■■□□□ 1.71
CCDC28A-202ENST00000611852 ZNF518AQ6AHZ1 1483 aa25.75■■□□□ 1.71
CCDC28A-202ENST00000611852 PLEKHH2Q8IVE3 1493 aa25.75■■□□□ 1.71
CCDC28A-202ENST00000611852 ZMYM4Q5VZL5 1548 aa25.74■■□□□ 1.71
CCDC28A-202ENST00000611852 KIAA1107Q9UPP5 1409 aa25.74■■□□□ 1.71
CCDC28A-202ENST00000611852 SYCP2Q9BX26 1530 aa25.74■■□□□ 1.71
CCDC28A-202ENST00000611852 AFAP1Q8N556 730 aa25.73■■□□□ 1.71
CCDC28A-202ENST00000611852 TRAPPC8Q9Y2L5 1435 aa25.73■■□□□ 1.71
CCDC28A-202ENST00000611852 HNRNPMP52272 730 aaKnown RBP eCLIP25.71■■□□□ 1.71
CCDC28A-202ENST00000611852 KDM5CP41229 1560 aa25.71■■□□□ 1.71
CCDC28A-202ENST00000611852 MIA2Q96PC5 1412 aa25.7■■□□□ 1.71
CCDC28A-202ENST00000611852 CAMSAP2Q08AD1 1489 aa25.69■■□□□ 1.7
CCDC28A-202ENST00000611852 MAGI2Q86UL8 1455 aa25.68■■□□□ 1.7
CCDC28A-202ENST00000611852 PPARGC1BQ86YN6 1023 aaKnown RBP25.67■■□□□ 1.7
CCDC28A-202ENST00000611852 MBD5Q9P267 1494 aa25.66■■□□□ 1.7
CCDC28A-202ENST00000611852 ARHGEF40Q8TER5 1519 aa25.65■■□□□ 1.7
CCDC28A-202ENST00000611852 YEATS2Q9ULM3 1422 aa25.64■■□□□ 1.7
CCDC28A-202ENST00000611852 ZFYVE16Q7Z3T8 1539 aa25.64■■□□□ 1.7
CCDC28A-202ENST00000611852 FGD6Q6ZV73 1430 aa25.63■■□□□ 1.69
CCDC28A-202ENST00000611852 MLH3Q9UHC1 1453 aa25.63■■□□□ 1.69
CCDC28A-202ENST00000611852 HECW2Q9P2P5 1572 aa25.62■■□□□ 1.69
CCDC28A-202ENST00000611852 PTPN23Q9H3S7 1636 aa25.59■■□□□ 1.69
CCDC28A-202ENST00000611852 ARHGEF5Q12774 1597 aa25.58■■□□□ 1.68
CCDC28A-202ENST00000611852 SPAG9O60271 1321 aaKnown RBP25.58■■□□□ 1.68
CCDC28A-202ENST00000611852 RSPH4AQ5TD94 716 aa25.58■■□□□ 1.68
CCDC28A-202ENST00000611852 MYT1LQ9UL68 1186 aa25.58■■□□□ 1.68
CCDC28A-202ENST00000611852 CCDC141Q6ZP82 1450 aa25.57■■□□□ 1.68
CCDC28A-202ENST00000611852 KIDINS220Q9ULH0 1771 aa25.57■■□□□ 1.68
CCDC28A-202ENST00000611852 TCOF1Q13428 1488 aaKnown RBP25.56■■□□□ 1.68
CCDC28A-202ENST00000611852 ATP10AO60312 1499 aa25.54■■□□□ 1.68
CCDC28A-202ENST00000611852 INO80Q9ULG1 1556 aaPredicted RBP25.54■■□□□ 1.68
CCDC28A-202ENST00000611852 DIP2CQ9Y2E4 1556 aa25.54■■□□□ 1.68
CCDC28A-202ENST00000611852 ABCA6Q8N139 1617 aa25.53■■□□□ 1.68
CCDC28A-202ENST00000611852 ATP7AQ04656 1500 aa25.53■■□□□ 1.68
CCDC28A-202ENST00000611852 C9orf84Q5VXU9 1444 aa25.5■■□□□ 1.67
CCDC28A-202ENST00000611852 RTEL1-TNFRSF6BF6WH68 1400 aa25.49■■□□□ 1.67
CCDC28A-202ENST00000611852 SIGLEC1Q9BZZ2 1709 aa25.48■■□□□ 1.67
CCDC28A-202ENST00000611852 TSPY4P0CV99 314 aa25.47■■□□□ 1.67
CCDC28A-202ENST00000611852 TSPY10P0CW01 314 aa25.47■■□□□ 1.67
CCDC28A-202ENST00000611852 REREQ9P2R6 1566 aa25.46■■□□□ 1.67
CCDC28A-202ENST00000611852 ARID4BQ4LE39 1312 aaPredicted RBP25.45■■□□□ 1.67
CCDC28A-202ENST00000611852 FAM50AQ14320 339 aaKnown RBP25.45■■□□□ 1.66
CCDC28A-202ENST00000611852 ABCC5O15440 1437 aa25.45■■□□□ 1.66
CCDC28A-202ENST00000611852 DNMT1P26358 1616 aaKnown RBP25.44■■□□□ 1.66
CCDC28A-202ENST00000611852 DAPK1P53355 1430 aa25.43■■□□□ 1.66
CCDC28A-202ENST00000611852 KDM4FA0A1W2PPD8 638 aa25.43■■□□□ 1.66
CCDC28A-202ENST00000611852 MAST1Q9Y2H9 1570 aa25.43■■□□□ 1.66
CCDC28A-202ENST00000611852 CROCC2H7BZ55 1655 aa25.41■■□□□ 1.66
CCDC28A-202ENST00000611852 SHANK2Q9UPX8 1470 aa25.4■■□□□ 1.66
CCDC28A-202ENST00000611852 ADGBQ8N7X0 1667 aa25.39■■□□□ 1.65
CCDC28A-202ENST00000611852 BCORL1Q5H9F3 1711 aa25.39■■□□□ 1.65
CCDC28A-202ENST00000611852 A2MP01023 1474 aa25.38■■□□□ 1.65
CCDC28A-202ENST00000611852 RRBP1Q9P2E9 1410 aaKnown RBP25.37■■□□□ 1.65
CCDC28A-202ENST00000611852 AGLP35573 1532 aa25.37■■□□□ 1.65
CCDC28A-202ENST00000611852 PLXNC1O60486 1568 aa25.37■■□□□ 1.65
CCDC28A-202ENST00000611852 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP25.36■■□□□ 1.65
CCDC28A-202ENST00000611852 ADAMTSL3P82987 1691 aa25.34■■□□□ 1.65
CCDC28A-202ENST00000611852 DHX29Q7Z478 1369 aaKnown RBP25.34■■□□□ 1.65
CCDC28A-202ENST00000611852 MLECQ14165 292 aa25.32■■□□□ 1.64
CCDC28A-202ENST00000611852 CHIC2Q9UKJ5 165 aa25.3■■□□□ 1.64
CCDC28A-202ENST00000611852 PTPRKQ15262 1439 aa25.28■■□□□ 1.64
CCDC28A-202ENST00000611852 MADDQ8WXG6 1647 aa25.28■■□□□ 1.64
CCDC28A-202ENST00000611852 ANKRD30AQ9BXX3 1397 aa25.27■■□□□ 1.64
CCDC28A-202ENST00000611852 NCOA1Q15788 1441 aa25.26■■□□□ 1.63
CCDC28A-202ENST00000611852 ADGRL2O95490 1459 aa25.26■■□□□ 1.63
CCDC28A-202ENST00000611852 KIF15Q9NS87 1388 aa25.26■■□□□ 1.63
CCDC28A-202ENST00000611852 RRP7BPQ9NSQ0 103 aa25.26■■□□□ 1.63
CCDC28A-202ENST00000611852 DUOX2Q9NRD8 1548 aa25.24■■□□□ 1.63
CCDC28A-202ENST00000611852 ITGAEP38570 1179 aa25.23■■□□□ 1.63
CCDC28A-202ENST00000611852 FER1L4A9Z1Z3 1794 aa25.22■■□□□ 1.63
CCDC28A-202ENST00000611852 KIF3BO15066 747 aa25.21■■□□□ 1.63
CCDC28A-202ENST00000611852 AEBP2Q6ZN18 517 aaPredicted RBP25.2■■□□□ 1.62
CCDC28A-202ENST00000611852 RIMS1Q86UR5 1692 aaKnown RBP25.2■■□□□ 1.62
CCDC28A-202ENST00000611852 GGT6Q6P531 493 aa25.19■■□□□ 1.62
CCDC28A-202ENST00000611852 PTPRMP28827 1452 aa25.19■■□□□ 1.62
CCDC28A-202ENST00000611852 ROCK1Q13464 1354 aa25.18■■□□□ 1.62
CCDC28A-202ENST00000611852 ERBINQ96RT1 1412 aa25.18■■□□□ 1.62
CCDC28A-202ENST00000611852 EIF2AK4Q9P2K8 1649 aaKnown RBP25.18■■□□□ 1.62
CCDC28A-202ENST00000611852 PPP6R1Q9UPN7 881 aa25.13■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms