RNA–Protein interactions for RNA: ENST00000608957.5

LINC00539-204, long intergenic non-protein coding RNA 539, humanhuman

TSL 5 BASIC

Gene LINC00539, Length 869 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-204ENST00000608957 ARHGEF40Q8TER5 1519 aa18.61■□□□□ 0.57
LINC00539-204ENST00000608957 SIGLEC1Q9BZZ2 1709 aa18.6■□□□□ 0.57
LINC00539-204ENST00000608957 LOC105371045A0A1W2PR82 267 aa18.6■□□□□ 0.57
LINC00539-204ENST00000608957 ARHGAP5Q13017 1502 aa18.58■□□□□ 0.56
LINC00539-204ENST00000608957 SCAPERQ9BY12 1400 aa18.57■□□□□ 0.56
LINC00539-204ENST00000608957 POGZQ7Z3K3 1410 aa18.57■□□□□ 0.56
LINC00539-204ENST00000608957 ADAMTSL3P82987 1691 aa18.57■□□□□ 0.56
LINC00539-204ENST00000608957 BCORL1Q5H9F3 1711 aa18.56■□□□□ 0.56
LINC00539-204ENST00000608957 YEATS2Q9ULM3 1422 aa18.55■□□□□ 0.56
LINC00539-204ENST00000608957 EFCAB2Q5VUJ9 269 aa18.54■□□□□ 0.56
LINC00539-204ENST00000608957 ZFYVE16Q7Z3T8 1539 aa18.54■□□□□ 0.56
LINC00539-204ENST00000608957 ITSN2Q9NZM3 1697 aa18.53■□□□□ 0.56
LINC00539-204ENST00000608957 ABCC1P33527 1531 aa18.51■□□□□ 0.55
LINC00539-204ENST00000608957 ARHGEF12Q9NZN5 1544 aa18.51■□□□□ 0.55
LINC00539-204ENST00000608957 KDM5CP41229 1560 aa18.51■□□□□ 0.55
LINC00539-204ENST00000608957 MAGI2Q86UL8 1455 aa18.5■□□□□ 0.55
LINC00539-204ENST00000608957 MADDQ8WXG6 1647 aa18.49■□□□□ 0.55
LINC00539-204ENST00000608957 SAMD9LQ8IVG5 1584 aa18.48■□□□□ 0.55
LINC00539-204ENST00000608957 GPATCH8Q9UKJ3 1502 aaKnown RBP18.48■□□□□ 0.55
LINC00539-204ENST00000608957 ZNF518AQ6AHZ1 1483 aa18.46■□□□□ 0.55
LINC00539-204ENST00000608957 EHBP1L1Q8N3D4 1523 aa18.46■□□□□ 0.55
LINC00539-204ENST00000608957 HECW2Q9P2P5 1572 aa18.46■□□□□ 0.55
LINC00539-204ENST00000608957 TRAPPC8Q9Y2L5 1435 aa18.45■□□□□ 0.54
LINC00539-204ENST00000608957 TIAM1Q13009 1591 aa18.45■□□□□ 0.54
LINC00539-204ENST00000608957 RIMS1Q86UR5 1692 aaKnown RBP18.44■□□□□ 0.54
LINC00539-204ENST00000608957 AFAP1Q8N556 730 aa18.44■□□□□ 0.54
LINC00539-204ENST00000608957 MTUS2Q5JR59 1369 aa18.43■□□□□ 0.54
LINC00539-204ENST00000608957 DIP2CQ9Y2E4 1556 aa18.43■□□□□ 0.54
LINC00539-204ENST00000608957 ABCA6Q8N139 1617 aa18.43■□□□□ 0.54
LINC00539-204ENST00000608957 KIDINS220Q9ULH0 1771 aa18.42■□□□□ 0.54
LINC00539-204ENST00000608957 VPS8Q8N3P4 1428 aa18.42■□□□□ 0.54
LINC00539-204ENST00000608957 PTPRMP28827 1452 aa18.42■□□□□ 0.54
LINC00539-204ENST00000608957 ARID4BQ4LE39 1312 aaPredicted RBP18.42■□□□□ 0.54
LINC00539-204ENST00000608957 ATP10AO60312 1499 aa18.41■□□□□ 0.54
LINC00539-204ENST00000608957 SYCP2Q9BX26 1530 aa18.41■□□□□ 0.54
LINC00539-204ENST00000608957 FER1L4A9Z1Z3 1794 aa18.4■□□□□ 0.54
LINC00539-204ENST00000608957 C9orf84Q5VXU9 1444 aa18.4■□□□□ 0.54
LINC00539-204ENST00000608957 MLH3Q9UHC1 1453 aa18.39■□□□□ 0.53
LINC00539-204ENST00000608957 SUPT6HQ7KZ85 1726 aaKnown RBP18.38■□□□□ 0.53
LINC00539-204ENST00000608957 CCNB3Q8WWL7 1395 aa18.38■□□□□ 0.53
LINC00539-204ENST00000608957 REREQ9P2R6 1566 aa18.36■□□□□ 0.53
LINC00539-204ENST00000608957 ZNF777Q9ULD5 760 aaPredicted RBP18.36■□□□□ 0.53
LINC00539-204ENST00000608957 NCOA2Q15596 1464 aa18.33■□□□□ 0.53
LINC00539-204ENST00000608957 HNRNPMP52272 730 aaKnown RBP eCLIP18.33■□□□□ 0.52
LINC00539-204ENST00000608957 CFDP1Q9UEE9 299 aaPredicted RBP18.33■□□□□ 0.52
LINC00539-204ENST00000608957 KIAA1107Q9UPP5 1409 aa18.32■□□□□ 0.52
LINC00539-204ENST00000608957 MLECQ14165 292 aa18.32■□□□□ 0.52
LINC00539-204ENST00000608957 INO80Q9ULG1 1556 aaPredicted RBP18.32■□□□□ 0.52
LINC00539-204ENST00000608957 LRRC9Q6ZRR7 1453 aa18.32■□□□□ 0.52
LINC00539-204ENST00000608957 ZNF644Q9H582 1327 aaPredicted RBP18.31■□□□□ 0.52
LINC00539-204ENST00000608957 PLEKHH2Q8IVE3 1493 aa18.31■□□□□ 0.52
LINC00539-204ENST00000608957 MAP3K1Q13233 1512 aa18.3■□□□□ 0.52
LINC00539-204ENST00000608957 MYT1LQ9UL68 1186 aa18.29■□□□□ 0.52
LINC00539-204ENST00000608957 AGLP35573 1532 aa18.28■□□□□ 0.52
LINC00539-204ENST00000608957 ATP7AQ04656 1500 aa18.28■□□□□ 0.52
LINC00539-204ENST00000608957 MBD5Q9P267 1494 aa18.28■□□□□ 0.52
LINC00539-204ENST00000608957 KANK4Q5T7N3 995 aaPredicted RBP18.27■□□□□ 0.52
LINC00539-204ENST00000608957 CAMSAP2Q08AD1 1489 aa18.26■□□□□ 0.51
LINC00539-204ENST00000608957 SPAG9O60271 1321 aaKnown RBP18.24■□□□□ 0.51
LINC00539-204ENST00000608957 PLXNC1O60486 1568 aa18.24■□□□□ 0.51
LINC00539-204ENST00000608957 ADGBQ8N7X0 1667 aa18.24■□□□□ 0.51
LINC00539-204ENST00000608957 LMTK3Q96Q04 1460 aa18.23■□□□□ 0.51
LINC00539-204ENST00000608957 C3P01024 1663 aa18.22■□□□□ 0.51
LINC00539-204ENST00000608957 PLPPR3Q6T4P5 718 aa18.21■□□□□ 0.51
LINC00539-204ENST00000608957 ARHGEF5Q12774 1597 aa18.19■□□□□ 0.5
LINC00539-204ENST00000608957 A2MP01023 1474 aa18.19■□□□□ 0.5
LINC00539-204ENST00000608957 CCDC141Q6ZP82 1450 aa18.18■□□□□ 0.5
LINC00539-204ENST00000608957 CEBPAP49715 358 aaPredicted RBP18.17■□□□□ 0.5
LINC00539-204ENST00000608957 PREX1Q8TCU6 1659 aa18.16■□□□□ 0.5
LINC00539-204ENST00000608957 SETD1BQ9UPS6 1966 aaKnown RBP18.16■□□□□ 0.5
LINC00539-204ENST00000608957 RTEL1-TNFRSF6BF6WH68 1400 aa18.15■□□□□ 0.5
LINC00539-204ENST00000608957 MROH2AA6NES4 1674 aa18.15■□□□□ 0.5
LINC00539-204ENST00000608957 MYOM3Q5VTT5 1437 aa18.15■□□□□ 0.5
LINC00539-204ENST00000608957 CLTCQ00610 1675 aaKnown RBP18.14■□□□□ 0.49
LINC00539-204ENST00000608957 MIA2Q96PC5 1412 aa18.11■□□□□ 0.49
LINC00539-204ENST00000608957 MAST1Q9Y2H9 1570 aa18.11■□□□□ 0.49
LINC00539-204ENST00000608957 PTPN23Q9H3S7 1636 aa18.09■□□□□ 0.49
LINC00539-204ENST00000608957 HSPA2P54652 639 aa18.09■□□□□ 0.49
LINC00539-204ENST00000608957 CROCC2H7BZ55 1655 aa18.09■□□□□ 0.49
LINC00539-204ENST00000608957 CNTLNQ9NXG0 1405 aa18.08■□□□□ 0.49
LINC00539-204ENST00000608957 DHX29Q7Z478 1369 aaKnown RBP18.08■□□□□ 0.49
LINC00539-204ENST00000608957 RSPH4AQ5TD94 716 aa18.07■□□□□ 0.48
LINC00539-204ENST00000608957 STRCQ7RTU9 1775 aa18.05■□□□□ 0.48
LINC00539-204ENST00000608957 APLP2Q06481 763 aa18.05■□□□□ 0.48
LINC00539-204ENST00000608957 GGT6Q6P531 493 aa18.04■□□□□ 0.48
LINC00539-204ENST00000608957 ZMYM3Q14202 1370 aa18.04■□□□□ 0.48
LINC00539-204ENST00000608957 TCOF1Q13428 1488 aaKnown RBP18.03■□□□□ 0.48
LINC00539-204ENST00000608957 FGD6Q6ZV73 1430 aa18.03■□□□□ 0.48
LINC00539-204ENST00000608957 ESF1Q9H501 851 aaKnown RBP18.02■□□□□ 0.48
LINC00539-204ENST00000608957 DNMT1P26358 1616 aaKnown RBP18.01■□□□□ 0.47
LINC00539-204ENST00000608957 UHRF1BP1Q6BDS2 1440 aa18.01■□□□□ 0.47
LINC00539-204ENST00000608957 RNF17Q9BXT8 1623 aaKnown RBP18.01■□□□□ 0.47
LINC00539-204ENST00000608957 ABCC5O15440 1437 aa18■□□□□ 0.47
LINC00539-204ENST00000608957 TSPY4P0CV99 314 aa18■□□□□ 0.47
LINC00539-204ENST00000608957 TSPY10P0CW01 314 aa18■□□□□ 0.47
LINC00539-204ENST00000608957 KIF3BO15066 747 aa17.99■□□□□ 0.47
LINC00539-204ENST00000608957 NPATQ14207 1427 aa17.98■□□□□ 0.47
LINC00539-204ENST00000608957 PTPRKQ15262 1439 aa17.98■□□□□ 0.47
LINC00539-204ENST00000608957 MROH1Q8NDA8 1641 aa17.98■□□□□ 0.47
LINC00539-204ENST00000608957 MYO3AQ8NEV4 1616 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms