RNA–Protein interactions for RNA: ENST00000604740.5

LAMA4-222, Transcript of laminin subunit alpha 4, human

TSL 2

Gene LAMA4, Length 694 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
LAMA4-222	ENST00000604740	CHGA	P10645	457 aa	Known RBP	11.89	□□□□□ -0.51
LAMA4-222	ENST00000604740	FAM205C	A6NFA0	338 aa		11.88	□□□□□ -0.51
LAMA4-222	ENST00000604740	HS3ST6	Q96QI5	342 aa		11.86	□□□□□ -0.51
LAMA4-222	ENST00000604740	HOXB1	P14653	301 aa	Predicted RBP	11.85	□□□□□ -0.51
LAMA4-222	ENST00000604740	PPP1R37	O75864	691 aa		11.84	□□□□□ -0.51
LAMA4-222	ENST00000604740	POTEB3	A0JP26	581 aa		11.81	□□□□□ -0.52
LAMA4-222	ENST00000604740	POTEB	Q6S5H4	581 aa		11.81	□□□□□ -0.52
LAMA4-222	ENST00000604740	C2orf72	A6NCS6	295 aa		11.8	□□□□□ -0.52
LAMA4-222	ENST00000604740	ZSWIM6	Q9HCJ5	1215 aa		11.8	□□□□□ -0.52
LAMA4-222	ENST00000604740	KIF3C	O14782	793 aa		11.78	□□□□□ -0.52
LAMA4-222	ENST00000604740	TMC2	Q8TDI7	906 aa		11.78	□□□□□ -0.52
LAMA4-222	ENST00000604740	ERBB3	P21860	1342 aa		11.78	□□□□□ -0.52
LAMA4-222	ENST00000604740	DCAF8L2	P0C7V8	631 aa		11.76	□□□□□ -0.53
LAMA4-222	ENST00000604740	NKX1-1	Q15270	411 aa	Predicted RBP	11.75	□□□□□ -0.53
LAMA4-222	ENST00000604740	GPR153	Q6NV75	609 aa		11.75	□□□□□ -0.53
LAMA4-222	ENST00000604740	ARSI	Q5FYB1	569 aa		11.73	□□□□□ -0.53
LAMA4-222	ENST00000604740	DNAJC5	Q9H3Z4	198 aa		11.73	□□□□□ -0.53
LAMA4-222	ENST00000604740	VARS2	Q5ST30	1063 aa	Known RBP	11.72	□□□□□ -0.53
LAMA4-222	ENST00000604740	KRTAP3-3	Q9BYR6	98 aa		11.71	□□□□□ -0.53
LAMA4-222	ENST00000604740	KRTAP3-2	Q9BYR7	98 aa		11.71	□□□□□ -0.53
LAMA4-222	ENST00000604740	KHSRP	Q92945	711 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
LAMA4-222	ENST00000604740	RYDEN	Q9NUL5	291 aa	Known RBP	11.7	□□□□□ -0.54
LAMA4-222	ENST00000604740	SPNS2	Q8IVW8	549 aa		11.69	□□□□□ -0.54
LAMA4-222	ENST00000604740	SLC34A2	O95436	690 aa		11.63	□□□□□ -0.55
LAMA4-222	ENST00000604740	NUDT7	P0C024	238 aa		11.63	□□□□□ -0.55
LAMA4-222	ENST00000604740	MMRN1	Q13201	1228 aa		11.63	□□□□□ -0.55
LAMA4-222	ENST00000604740	PCDHGA4	Q9Y5G9	962 aa		11.63	□□□□□ -0.55
LAMA4-222	ENST00000604740	ZNF316	A6NFI3	1004 aa	Predicted RBP	11.62	□□□□□ -0.55
LAMA4-222	ENST00000604740	GPHN	Q9NQX3	736 aa	Predicted RBP	11.62	□□□□□ -0.55
LAMA4-222	ENST00000604740	FOXK1	P85037	733 aa		11.6	□□□□□ -0.55
LAMA4-222	ENST00000604740	PLPP6	Q8IY26	295 aa		11.6	□□□□□ -0.55
LAMA4-222	ENST00000604740	ZNF687	Q8N1G0	1237 aa		11.6	□□□□□ -0.55
LAMA4-222	ENST00000604740	DSG2	Q14126	1118 aa		11.58	□□□□□ -0.56
LAMA4-222	ENST00000604740	GTPBP6	O43824	516 aa	Predicted RBP	11.57	□□□□□ -0.56
LAMA4-222	ENST00000604740	LHX6	Q9UPM6	363 aa		11.55	□□□□□ -0.56
LAMA4-222	ENST00000604740	PTCD2	Q8WV60	388 aa	Known RBP	11.53	□□□□□ -0.56
LAMA4-222	ENST00000604740	CRISPLD2	Q9H0B8	497 aa		11.52	□□□□□ -0.57
LAMA4-222	ENST00000604740	PPP1R15B	Q5SWA1	713 aa		11.49	□□□□□ -0.57
LAMA4-222	ENST00000604740	NCKAP5L	Q9HCH0	1330 aa		11.49	□□□□□ -0.57
LAMA4-222	ENST00000604740	TBC1D12	O60347	775 aa		11.48	□□□□□ -0.57
LAMA4-222	ENST00000604740	AMER1	Q5JTC6	1135 aa	Predicted RBP	11.48	□□□□□ -0.57
LAMA4-222	ENST00000604740	PDE4A	P27815	886 aa		11.47	□□□□□ -0.57
LAMA4-222	ENST00000604740	ANKRD13D	Q6ZTN6	518 aa		11.46	□□□□□ -0.57
LAMA4-222	ENST00000604740	UPF1	Q92900	1129 aa	Known RBP eCLIP	11.46	□□□□□ -0.57
LAMA4-222	ENST00000604740	KDM4F	A0A1W2PPD8	638 aa		11.44	□□□□□ -0.58
LAMA4-222	ENST00000604740	PSD	A5PKW4	1024 aa	Predicted RBP	11.44	□□□□□ -0.58
LAMA4-222	ENST00000604740	PBX2	P40425	430 aa		11.44	□□□□□ -0.58
LAMA4-222	ENST00000604740	LSM11	P83369	360 aa	Known RBP eCLIP	11.43	□□□□□ -0.58
LAMA4-222	ENST00000604740	LARP6	Q9BRS8	491 aa	Known RBP	11.43	□□□□□ -0.58
LAMA4-222	ENST00000604740	AXIN2	Q9Y2T1	843 aa		11.43	□□□□□ -0.58
LAMA4-222	ENST00000604740	OXER1	Q8TDS5	423 aa		11.42	□□□□□ -0.58
LAMA4-222	ENST00000604740	DDX27	Q96GQ7	796 aa	Known RBP	11.42	□□□□□ -0.58
LAMA4-222	ENST00000604740	RTN4	Q9NQC3	1192 aa	Known RBP	11.42	□□□□□ -0.58
LAMA4-222	ENST00000604740	POTEE	Q6S8J3	1075 aa		11.41	□□□□□ -0.58
LAMA4-222	ENST00000604740	RNF166	Q96A37	237 aa	Predicted RBP	11.41	□□□□□ -0.58
LAMA4-222	ENST00000604740	MYT1L	Q9UL68	1186 aa		11.41	□□□□□ -0.58
LAMA4-222	ENST00000604740	BBX	Q8WY36	941 aa	Predicted RBP	11.39	□□□□□ -0.59
LAMA4-222	ENST00000604740	PPP4R3B	Q5MIZ7	849 aa		11.38	□□□□□ -0.59
LAMA4-222	ENST00000604740	PTGER2	P43116	358 aa		11.37	□□□□□ -0.59
LAMA4-222	ENST00000604740	CADPS2	Q86UW7	1296 aa		11.37	□□□□□ -0.59
LAMA4-222	ENST00000604740	MFSD10	Q14728	455 aa		11.36	□□□□□ -0.59
LAMA4-222	ENST00000604740	ARHGAP33	O14559	1287 aa		11.35	□□□□□ -0.59
LAMA4-222	ENST00000604740	PSEN2	P49810	448 aa		11.31	□□□□□ -0.6
LAMA4-222	ENST00000604740	ZNF454	Q8N9F8	522 aa		11.31	□□□□□ -0.6
LAMA4-222	ENST00000604740	EVI5	O60447	810 aa		11.3	□□□□□ -0.6
LAMA4-222	ENST00000604740	ZBTB4	Q9P1Z0	1013 aa	Predicted RBP	11.3	□□□□□ -0.6
LAMA4-222	ENST00000604740	MAP3K9	P80192	1104 aa		11.29	□□□□□ -0.6
LAMA4-222	ENST00000604740	DMRTA1	Q5VZB9	504 aa		11.29	□□□□□ -0.6
LAMA4-222	ENST00000604740	ADGRD1	Q6QNK2	874 aa		11.29	□□□□□ -0.6
LAMA4-222	ENST00000604740	KCNH8	Q96L42	1107 aa		11.29	□□□□□ -0.6
LAMA4-222	ENST00000604740	SPRYD3	Q8NCJ5	442 aa		11.28	□□□□□ -0.6
LAMA4-222	ENST00000604740	KCNK17	Q96T54	332 aa		11.28	□□□□□ -0.6
LAMA4-222	ENST00000604740	EMILIN3	Q9NT22	766 aa		11.28	□□□□□ -0.6
LAMA4-222	ENST00000604740	FOSB	P53539	338 aa		11.25	□□□□□ -0.61
LAMA4-222	ENST00000604740	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.24	□□□□□ -0.61
LAMA4-222	ENST00000604740	TK2	O00142	265 aa		11.23	□□□□□ -0.61
LAMA4-222	ENST00000604740	JPH4	Q96JJ6	628 aa		11.23	□□□□□ -0.61
LAMA4-222	ENST00000604740	CFAP44	Q96MT7	982 aa		11.22	□□□□□ -0.61
LAMA4-222	ENST00000604740	BCL2L12	Q9HB09	334 aa		11.22	□□□□□ -0.61
LAMA4-222	ENST00000604740	PAXIP1	Q6ZW49	1069 aa	Predicted RBP	11.21	□□□□□ -0.61
LAMA4-222	ENST00000604740	PTPRE	P23469	700 aa		11.19	□□□□□ -0.62
LAMA4-222	ENST00000604740	CAMK2B	Q13554	666 aa		11.19	□□□□□ -0.62
LAMA4-222	ENST00000604740	HR	O43593	1189 aa		11.18	□□□□□ -0.62
LAMA4-222	ENST00000604740	ZDHHC16	Q969W1	377 aa		11.18	□□□□□ -0.62
LAMA4-222	ENST00000604740	DPYSL4	O14531	572 aa		11.17	□□□□□ -0.62
LAMA4-222	ENST00000604740	STAC3	Q96MF2	364 aa		11.17	□□□□□ -0.62
LAMA4-222	ENST00000604740	ADAM33	Q9BZ11	813 aa		11.16	□□□□□ -0.62
LAMA4-222	ENST00000604740	VPS9D1	Q9Y2B5	631 aa		11.15	□□□□□ -0.62
LAMA4-222	ENST00000604740	PCDHGA10	Q9Y5H3	936 aa		11.14	□□□□□ -0.63
LAMA4-222	ENST00000604740	SLC4A5	Q9BY07	1137 aa		11.11	□□□□□ -0.63
LAMA4-222	ENST00000604740	PHF14	O94880	888 aa		11.1	□□□□□ -0.63
LAMA4-222	ENST00000604740	TYW1B	Q6NUM6	668 aa		11.1	□□□□□ -0.63
LAMA4-222	ENST00000604740	KCTD12	Q96CX2	325 aa	Known RBP	11.1	□□□□□ -0.63
LAMA4-222	ENST00000604740	ZBED2	Q9BTP6	218 aa		11.1	□□□□□ -0.63
LAMA4-222	ENST00000604740	FBXW7	Q969H0	707 aa		11.09	□□□□□ -0.63
LAMA4-222	ENST00000604740	HCST	Q9UBK5	93 aa		11.09	□□□□□ -0.63
LAMA4-222	ENST00000604740	WDR70	Q9NW82	654 aa		11.07	□□□□□ -0.64
LAMA4-222	ENST00000604740	PPP1R3G	B7ZBB8	358 aa		11.06	□□□□□ -0.64
LAMA4-222	ENST00000604740	E2F4	Q16254	413 aa		11.05	□□□□□ -0.64
LAMA4-222	ENST00000604740	DDX12P	Q92771	950 aa		11.05	□□□□□ -0.64

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