RNA–Protein interactions for RNA: ENST00000601981.5

UPF1-213, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 556 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-213ENST00000601981 PLCH2O75038 1416 aa15.61■□□□□ 0.09
UPF1-213ENST00000601981 KDM6BO15054 1643 aa15.61■□□□□ 0.09
UPF1-213ENST00000601981 FANCAO15360 1455 aa15.6■□□□□ 0.09
UPF1-213ENST00000601981 NCOA2Q15596 1464 aa15.6■□□□□ 0.09
UPF1-213ENST00000601981 KANK4Q5T7N3 995 aaPredicted RBP15.58■□□□□ 0.08
UPF1-213ENST00000601981 EFCAB2Q5VUJ9 269 aa15.58■□□□□ 0.08
UPF1-213ENST00000601981 GPATCH8Q9UKJ3 1502 aaKnown RBP15.56■□□□□ 0.08
UPF1-213ENST00000601981 AKNAQ7Z591 1439 aa15.55■□□□□ 0.08
UPF1-213ENST00000601981 CFDP1Q9UEE9 299 aaPredicted RBP15.54■□□□□ 0.08
UPF1-213ENST00000601981 ADGRL1O94910 1474 aa15.53■□□□□ 0.08
UPF1-213ENST00000601981 PLEKHH2Q8IVE3 1493 aa15.52■□□□□ 0.08
UPF1-213ENST00000601981 MYOM3Q5VTT5 1437 aa15.51■□□□□ 0.07
UPF1-213ENST00000601981 ZNF777Q9ULD5 760 aaPredicted RBP15.5■□□□□ 0.07
UPF1-213ENST00000601981 DENND4BO75064 1496 aaPredicted RBP15.5■□□□□ 0.07
UPF1-213ENST00000601981 SAMD9LQ8IVG5 1584 aa15.49■□□□□ 0.07
UPF1-213ENST00000601981 ABCC1P33527 1531 aa15.49■□□□□ 0.07
UPF1-213ENST00000601981 MIA2Q96PC5 1412 aa15.49■□□□□ 0.07
UPF1-213ENST00000601981 RICTORQ6R327 1708 aa15.48■□□□□ 0.07
UPF1-213ENST00000601981 TRIM26Q12899 539 aaPredicted RBP15.48■□□□□ 0.07
UPF1-213ENST00000601981 SCAPERQ9BY12 1400 aa15.48■□□□□ 0.07
UPF1-213ENST00000601981 ZNF518AQ6AHZ1 1483 aa15.46■□□□□ 0.07
UPF1-213ENST00000601981 KDM4FA0A1W2PPD8 638 aa15.46■□□□□ 0.07
UPF1-213ENST00000601981 CAMSAP2Q08AD1 1489 aa15.46■□□□□ 0.06
UPF1-213ENST00000601981 POGZQ7Z3K3 1410 aa15.45■□□□□ 0.06
UPF1-213ENST00000601981 KIAA1107Q9UPP5 1409 aa15.45■□□□□ 0.06
UPF1-213ENST00000601981 SYCP2Q9BX26 1530 aa15.45■□□□□ 0.06
UPF1-213ENST00000601981 PTPN23Q9H3S7 1636 aa15.44■□□□□ 0.06
UPF1-213ENST00000601981 COL17A1Q9UMD9 1497 aaPredicted RBP15.44■□□□□ 0.06
UPF1-213ENST00000601981 FGD6Q6ZV73 1430 aa15.43■□□□□ 0.06
UPF1-213ENST00000601981 FRMPD1Q5SYB0 1578 aa15.43■□□□□ 0.06
UPF1-213ENST00000601981 ZMYM4Q5VZL5 1548 aa15.43■□□□□ 0.06
UPF1-213ENST00000601981 PPARGC1BQ86YN6 1023 aaKnown RBP15.42■□□□□ 0.06
UPF1-213ENST00000601981 RAPGEF3O95398 923 aa15.41■□□□□ 0.06
UPF1-213ENST00000601981 RSPH4AQ5TD94 716 aa15.41■□□□□ 0.06
UPF1-213ENST00000601981 PCGF6Q9BYE7 350 aa15.41■□□□□ 0.06
UPF1-213ENST00000601981 KDM5CP41229 1560 aa15.41■□□□□ 0.06
UPF1-213ENST00000601981 ARHGEF5Q12774 1597 aa15.41■□□□□ 0.06
UPF1-213ENST00000601981 HECW2Q9P2P5 1572 aa15.41■□□□□ 0.06
UPF1-213ENST00000601981 MAGI2Q86UL8 1455 aa15.4■□□□□ 0.06
UPF1-213ENST00000601981 ARHGEF12Q9NZN5 1544 aa15.39■□□□□ 0.05
UPF1-213ENST00000601981 MYT1LQ9UL68 1186 aa15.39■□□□□ 0.05
UPF1-213ENST00000601981 TCOF1Q13428 1488 aaKnown RBP15.39■□□□□ 0.05
UPF1-213ENST00000601981 CCDC141Q6ZP82 1450 aa15.39■□□□□ 0.05
UPF1-213ENST00000601981 HNRNPMP52272 730 aaKnown RBP eCLIP15.38■□□□□ 0.05
UPF1-213ENST00000601981 ZNF644Q9H582 1327 aaPredicted RBP15.38■□□□□ 0.05
UPF1-213ENST00000601981 ZFYVE16Q7Z3T8 1539 aa15.38■□□□□ 0.05
UPF1-213ENST00000601981 TRAPPC8Q9Y2L5 1435 aa15.37■□□□□ 0.05
UPF1-213ENST00000601981 ARHGEF40Q8TER5 1519 aa15.37■□□□□ 0.05
UPF1-213ENST00000601981 MBD5Q9P267 1494 aa15.36■□□□□ 0.05
UPF1-213ENST00000601981 CROCC2H7BZ55 1655 aa15.35■□□□□ 0.05
UPF1-213ENST00000601981 MLH3Q9UHC1 1453 aa15.35■□□□□ 0.05
UPF1-213ENST00000601981 AFAP1Q8N556 730 aa15.35■□□□□ 0.05
UPF1-213ENST00000601981 SPAG9O60271 1321 aaKnown RBP15.35■□□□□ 0.05
UPF1-213ENST00000601981 DNMT1P26358 1616 aaKnown RBP15.35■□□□□ 0.05
UPF1-213ENST00000601981 ATP7AQ04656 1500 aa15.34■□□□□ 0.05
UPF1-213ENST00000601981 INO80Q9ULG1 1556 aaPredicted RBP15.34■□□□□ 0.05
UPF1-213ENST00000601981 TSPY4P0CV99 314 aa15.34■□□□□ 0.05
UPF1-213ENST00000601981 TSPY10P0CW01 314 aa15.34■□□□□ 0.05
UPF1-213ENST00000601981 FAM50AQ14320 339 aaKnown RBP15.34■□□□□ 0.05
UPF1-213ENST00000601981 KIDINS220Q9ULH0 1771 aa15.34■□□□□ 0.05
UPF1-213ENST00000601981 RTEL1-TNFRSF6BF6WH68 1400 aa15.32■□□□□ 0.04
UPF1-213ENST00000601981 MAST1Q9Y2H9 1570 aa15.32■□□□□ 0.04
UPF1-213ENST00000601981 ADGBQ8N7X0 1667 aa15.32■□□□□ 0.04
UPF1-213ENST00000601981 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP15.31■□□□□ 0.04
UPF1-213ENST00000601981 SHANK2Q9UPX8 1470 aa15.31■□□□□ 0.04
UPF1-213ENST00000601981 ABCA6Q8N139 1617 aa15.3■□□□□ 0.04
UPF1-213ENST00000601981 RRBP1Q9P2E9 1410 aaKnown RBP15.3■□□□□ 0.04
UPF1-213ENST00000601981 DIP2CQ9Y2E4 1556 aa15.29■□□□□ 0.04
UPF1-213ENST00000601981 ATP10AO60312 1499 aa15.29■□□□□ 0.04
UPF1-213ENST00000601981 DAPK1P53355 1430 aa15.29■□□□□ 0.04
UPF1-213ENST00000601981 C9orf84Q5VXU9 1444 aa15.29■□□□□ 0.04
UPF1-213ENST00000601981 YEATS2Q9ULM3 1422 aa15.28■□□□□ 0.04
UPF1-213ENST00000601981 REREQ9P2R6 1566 aa15.28■□□□□ 0.04
UPF1-213ENST00000601981 PLXNC1O60486 1568 aa15.27■□□□□ 0.03
UPF1-213ENST00000601981 ABCC5O15440 1437 aa15.26■□□□□ 0.03
UPF1-213ENST00000601981 ANKRD30AQ9BXX3 1397 aa15.24■□□□□ 0.03
UPF1-213ENST00000601981 ARID4BQ4LE39 1312 aaPredicted RBP15.23■□□□□ 0.03
UPF1-213ENST00000601981 A2MP01023 1474 aa15.23■□□□□ 0.03
UPF1-213ENST00000601981 AGLP35573 1532 aa15.21■□□□□ 0.03
UPF1-213ENST00000601981 ADGRL2O95490 1459 aa15.2■□□□□ 0.02
UPF1-213ENST00000601981 ITGAEP38570 1179 aa15.2■□□□□ 0.02
UPF1-213ENST00000601981 DUOX2Q9NRD8 1548 aa15.2■□□□□ 0.02
UPF1-213ENST00000601981 EIF2AK4Q9P2K8 1649 aaKnown RBP15.19■□□□□ 0.02
UPF1-213ENST00000601981 CHIC2Q9UKJ5 165 aa15.19■□□□□ 0.02
UPF1-213ENST00000601981 BCORL1Q5H9F3 1711 aa15.19■□□□□ 0.02
UPF1-213ENST00000601981 KIF15Q9NS87 1388 aa15.19■□□□□ 0.02
UPF1-213ENST00000601981 DHX29Q7Z478 1369 aaKnown RBP15.18■□□□□ 0.02
UPF1-213ENST00000601981 SIGLEC1Q9BZZ2 1709 aa15.17■□□□□ 0.02
UPF1-213ENST00000601981 ROCK1Q13464 1354 aa15.17■□□□□ 0.02
UPF1-213ENST00000601981 NCOA1Q15788 1441 aa15.17■□□□□ 0.02
UPF1-213ENST00000601981 ERBINQ96RT1 1412 aa15.16■□□□□ 0.02
UPF1-213ENST00000601981 FER1L4A9Z1Z3 1794 aa15.16■□□□□ 0.02
UPF1-213ENST00000601981 RRP7BPQ9NSQ0 103 aa15.15■□□□□ 0.02
UPF1-213ENST00000601981 ILDR1Q86SU0 546 aaPredicted RBP15.14■□□□□ 0.01
UPF1-213ENST00000601981 ADAMTSL3P82987 1691 aa15.13■□□□□ 0.01
UPF1-213ENST00000601981 PTPRKQ15262 1439 aa15.13■□□□□ 0.01
UPF1-213ENST00000601981 GCC2Q8IWJ2 1684 aa15.12■□□□□ 0.01
UPF1-213ENST00000601981 ESF1Q9H501 851 aaKnown RBP15.12■□□□□ 0.01
UPF1-213ENST00000601981 RNF17Q9BXT8 1623 aaKnown RBP15.11■□□□□ 0.01
UPF1-213ENST00000601981 KIF3BO15066 747 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms