RNA–Protein interactions for RNA: ENST00000601689.1

UPF1-212, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 561 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-212ENST00000601689 PREX2Q70Z35 1606 aa30.46■■■□□ 2.47
UPF1-212ENST00000601689 SCAPERQ9BY12 1400 aa30.46■■■□□ 2.47
UPF1-212ENST00000601689 CDC42BPBQ9Y5S2 1711 aa30.45■■■□□ 2.47
UPF1-212ENST00000601689 CCNB3Q8WWL7 1395 aa30.45■■■□□ 2.47
UPF1-212ENST00000601689 TIAM1Q13009 1591 aa30.43■■■□□ 2.46
UPF1-212ENST00000601689 CDC42BPAQ5VT25 1732 aa30.42■■■□□ 2.46
UPF1-212ENST00000601689 RICTORQ6R327 1708 aa30.42■■■□□ 2.46
UPF1-212ENST00000601689 MAP3K1Q13233 1512 aa30.38■■■□□ 2.45
UPF1-212ENST00000601689 CFDP1Q9UEE9 299 aaPredicted RBP30.38■■■□□ 2.45
UPF1-212ENST00000601689 ZNF777Q9ULD5 760 aaPredicted RBP30.38■■■□□ 2.45
UPF1-212ENST00000601689 SUPT6HQ7KZ85 1726 aaKnown RBP30.38■■■□□ 2.45
UPF1-212ENST00000601689 MYT1LQ9UL68 1186 aa30.36■■■□□ 2.45
UPF1-212ENST00000601689 GPATCH8Q9UKJ3 1502 aaKnown RBP30.36■■■□□ 2.45
UPF1-212ENST00000601689 FRMPD1Q5SYB0 1578 aa30.36■■■□□ 2.45
UPF1-212ENST00000601689 POGZQ7Z3K3 1410 aa30.35■■■□□ 2.45
UPF1-212ENST00000601689 ZNF518AQ6AHZ1 1483 aa30.34■■■□□ 2.45
UPF1-212ENST00000601689 MAGI2Q86UL8 1455 aa30.34■■■□□ 2.45
UPF1-212ENST00000601689 ITSN2Q9NZM3 1697 aa30.33■■■□□ 2.45
UPF1-212ENST00000601689 ZMYM4Q5VZL5 1548 aa30.32■■■□□ 2.44
UPF1-212ENST00000601689 LRRC9Q6ZRR7 1453 aa30.31■■■□□ 2.44
UPF1-212ENST00000601689 PLEKHH2Q8IVE3 1493 aa30.29■■■□□ 2.44
UPF1-212ENST00000601689 ABCC1P33527 1531 aa30.27■■■□□ 2.44
UPF1-212ENST00000601689 ARID4BQ4LE39 1312 aaPredicted RBP30.27■■■□□ 2.44
UPF1-212ENST00000601689 ZFYVE16Q7Z3T8 1539 aa30.27■■■□□ 2.44
UPF1-212ENST00000601689 NCOA2Q15596 1464 aa30.26■■■□□ 2.44
UPF1-212ENST00000601689 AFAP1Q8N556 730 aa30.25■■■□□ 2.43
UPF1-212ENST00000601689 ARHGEF40Q8TER5 1519 aa30.25■■■□□ 2.43
UPF1-212ENST00000601689 KDM4FA0A1W2PPD8 638 aa30.24■■■□□ 2.43
UPF1-212ENST00000601689 SAMD9LQ8IVG5 1584 aa30.21■■■□□ 2.43
UPF1-212ENST00000601689 KIAA1107Q9UPP5 1409 aa30.2■■■□□ 2.42
UPF1-212ENST00000601689 KANK4Q5T7N3 995 aaPredicted RBP30.19■■■□□ 2.42
UPF1-212ENST00000601689 KDM5CP41229 1560 aa30.19■■■□□ 2.42
UPF1-212ENST00000601689 HECW2Q9P2P5 1572 aa30.17■■■□□ 2.42
UPF1-212ENST00000601689 HNRNPMP52272 730 aaKnown RBP eCLIP30.17■■■□□ 2.428e-16■■■■■ 52.8
UPF1-212ENST00000601689 SYCP2Q9BX26 1530 aa30.16■■■□□ 2.42
UPF1-212ENST00000601689 YEATS2Q9ULM3 1422 aa30.15■■■□□ 2.42
UPF1-212ENST00000601689 TRAPPC8Q9Y2L5 1435 aa30.15■■■□□ 2.42
UPF1-212ENST00000601689 ATP10AO60312 1499 aa30.14■■■□□ 2.42
UPF1-212ENST00000601689 MLH3Q9UHC1 1453 aa30.14■■■□□ 2.42
UPF1-212ENST00000601689 ARHGEF12Q9NZN5 1544 aa30.14■■■□□ 2.42
UPF1-212ENST00000601689 RSPH4AQ5TD94 716 aa30.12■■■□□ 2.41
UPF1-212ENST00000601689 SPAG9O60271 1321 aaKnown RBP30.12■■■□□ 2.41
UPF1-212ENST00000601689 C9orf84Q5VXU9 1444 aa30.12■■■□□ 2.41
UPF1-212ENST00000601689 ZNF644Q9H582 1327 aaPredicted RBP30.06■■■□□ 2.4
UPF1-212ENST00000601689 BCORL1Q5H9F3 1711 aa30.05■■■□□ 2.4
UPF1-212ENST00000601689 MYOM3Q5VTT5 1437 aa30.05■■■□□ 2.4
UPF1-212ENST00000601689 MIA2Q96PC5 1412 aa30.05■■■□□ 2.4
UPF1-212ENST00000601689 CAMSAP2Q08AD1 1489 aa30.04■■■□□ 2.4
UPF1-212ENST00000601689 KIDINS220Q9ULH0 1771 aa30.01■■■□□ 2.39
UPF1-212ENST00000601689 TSPY4P0CV99 314 aa30.01■■■□□ 2.39
UPF1-212ENST00000601689 TSPY10P0CW01 314 aa30.01■■■□□ 2.39
UPF1-212ENST00000601689 DIP2CQ9Y2E4 1556 aa30■■■□□ 2.39
UPF1-212ENST00000601689 MLECQ14165 292 aa29.99■■■□□ 2.39
UPF1-212ENST00000601689 ADAMTSL3P82987 1691 aa29.98■■■□□ 2.39
UPF1-212ENST00000601689 ATP7AQ04656 1500 aa29.98■■■□□ 2.39
UPF1-212ENST00000601689 ABCA6Q8N139 1617 aa29.98■■■□□ 2.39
UPF1-212ENST00000601689 CCDC141Q6ZP82 1450 aa29.98■■■□□ 2.39
UPF1-212ENST00000601689 MBD5Q9P267 1494 aa29.97■■■□□ 2.39
UPF1-212ENST00000601689 REREQ9P2R6 1566 aa29.97■■■□□ 2.39
UPF1-212ENST00000601689 RTEL1-TNFRSF6BF6WH68 1400 aa29.93■■■□□ 2.38
UPF1-212ENST00000601689 ARHGEF5Q12774 1597 aa29.92■■■□□ 2.38
UPF1-212ENST00000601689 ESF1Q9H501 851 aaKnown RBP29.92■■■□□ 2.38
UPF1-212ENST00000601689 INO80Q9ULG1 1556 aaPredicted RBP29.92■■■□□ 2.38
UPF1-212ENST00000601689 MADDQ8WXG6 1647 aa29.9■■■□□ 2.38
UPF1-212ENST00000601689 AGLP35573 1532 aa29.88■■■□□ 2.37
UPF1-212ENST00000601689 ADGBQ8N7X0 1667 aa29.88■■■□□ 2.37
UPF1-212ENST00000601689 SIGLEC1Q9BZZ2 1709 aa29.88■■■□□ 2.37
UPF1-212ENST00000601689 PTPN23Q9H3S7 1636 aa29.86■■■□□ 2.37
UPF1-212ENST00000601689 FER1L4A9Z1Z3 1794 aa29.86■■■□□ 2.37
UPF1-212ENST00000601689 A2MP01023 1474 aa29.86■■■□□ 2.37
UPF1-212ENST00000601689 PTPRMP28827 1452 aa29.86■■■□□ 2.37
UPF1-212ENST00000601689 RIMS1Q86UR5 1692 aaKnown RBP29.85■■■□□ 2.37
UPF1-212ENST00000601689 FGD6Q6ZV73 1430 aa29.84■■■□□ 2.37
UPF1-212ENST00000601689 PLPPR3Q6T4P5 718 aa29.76■■■□□ 2.35
UPF1-212ENST00000601689 DHX29Q7Z478 1369 aaKnown RBP29.76■■■□□ 2.35
UPF1-212ENST00000601689 TCOF1Q13428 1488 aaKnown RBP29.75■■■□□ 2.35
UPF1-212ENST00000601689 FAM50AQ14320 339 aaKnown RBP29.75■■■□□ 2.35
UPF1-212ENST00000601689 MAST1Q9Y2H9 1570 aa29.75■■■□□ 2.35
UPF1-212ENST00000601689 PLXNC1O60486 1568 aa29.73■■■□□ 2.35
UPF1-212ENST00000601689 GGT6Q6P531 493 aa29.72■■■□□ 2.35
UPF1-212ENST00000601689 CNTLNQ9NXG0 1405 aa29.71■■■□□ 2.35
UPF1-212ENST00000601689 PPP6R1Q9UPN7 881 aa29.71■■■□□ 2.35
UPF1-212ENST00000601689 PPARGC1BQ86YN6 1023 aaKnown RBP29.69■■■□□ 2.34
UPF1-212ENST00000601689 SHANK2Q9UPX8 1470 aa29.68■■■□□ 2.34
UPF1-212ENST00000601689 DNMT1P26358 1616 aaKnown RBP29.68■■■□□ 2.34
UPF1-212ENST00000601689 KIF3BO15066 747 aa29.68■■■□□ 2.34
UPF1-212ENST00000601689 DAPK1P53355 1430 aa29.68■■■□□ 2.34
UPF1-212ENST00000601689 CROCC2H7BZ55 1655 aa29.67■■■□□ 2.34
UPF1-212ENST00000601689 ABCC5O15440 1437 aa29.67■■■□□ 2.34
UPF1-212ENST00000601689 ANKRD30AQ9BXX3 1397 aa29.62■■■□□ 2.33
UPF1-212ENST00000601689 SETD1BQ9UPS6 1966 aaKnown RBP29.6■■■□□ 2.33
UPF1-212ENST00000601689 DUOX2Q9NRD8 1548 aa29.6■■■□□ 2.33
UPF1-212ENST00000601689 MROH2AA6NES4 1674 aa29.58■■■□□ 2.33
UPF1-212ENST00000601689 CEBPAP49715 358 aaPredicted RBP29.58■■■□□ 2.33
UPF1-212ENST00000601689 RRP7BPQ9NSQ0 103 aa29.58■■■□□ 2.33
UPF1-212ENST00000601689 CHIC2Q9UKJ5 165 aa29.58■■■□□ 2.33
UPF1-212ENST00000601689 KIF15Q9NS87 1388 aa29.57■■■□□ 2.32
UPF1-212ENST00000601689 C3P01024 1663 aa29.55■■■□□ 2.32
UPF1-212ENST00000601689 CLTCQ00610 1675 aaKnown RBP29.55■■■□□ 2.32
UPF1-212ENST00000601689 EIF2AK4Q9P2K8 1649 aaKnown RBP29.55■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 53.6 ms