RNA–Protein interactions for RNA: ENST00000600888.2

CKS1BP3-201, Transcript of CDC28 protein kinase regulatory subunit 1B pseudogene 3, humanhuman

BASIC

Gene CKS1BP3, Length 237 nt, Biotype processed pseudogene, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1BP3-201ENST00000600888 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.05□□□□□ -0.96
CKS1BP3-201ENST00000600888 KDM2AQ9Y2K7 1162 aa9.05□□□□□ -0.96
CKS1BP3-201ENST00000600888 MAMSTRQ6ZN01 415 aa9.04□□□□□ -0.96
CKS1BP3-201ENST00000600888 CRISPLD2Q9H0B8 497 aa9.04□□□□□ -0.96
CKS1BP3-201ENST00000600888 NCKAP5LQ9HCH0 1330 aa9.04□□□□□ -0.96
CKS1BP3-201ENST00000600888 TMEM92Q6UXU6 159 aa9.03□□□□□ -0.96
CKS1BP3-201ENST00000600888 GPHNQ9NQX3 736 aaPredicted RBP9.03□□□□□ -0.96
CKS1BP3-201ENST00000600888 TMC2Q8TDI7 906 aa9.02□□□□□ -0.97
CKS1BP3-201ENST00000600888 LARP6Q9BRS8 491 aaKnown RBP9.02□□□□□ -0.97
CKS1BP3-201ENST00000600888 SCUBE2Q9NQ36 999 aa9.02□□□□□ -0.97
CKS1BP3-201ENST00000600888 C2orf72A6NCS6 295 aa9.01□□□□□ -0.97
CKS1BP3-201ENST00000600888 KIF3CO14782 793 aa9□□□□□ -0.97
CKS1BP3-201ENST00000600888 OTUD5Q96G74 571 aa8.98□□□□□ -0.97
CKS1BP3-201ENST00000600888 WDR70Q9NW82 654 aa8.98□□□□□ -0.97
CKS1BP3-201ENST00000600888 MFSD10Q14728 455 aa8.97□□□□□ -0.97
CKS1BP3-201ENST00000600888 SLAIN1Q8ND83 568 aa8.97□□□□□ -0.97
CKS1BP3-201ENST00000600888 DDX27Q96GQ7 796 aaKnown RBP8.97□□□□□ -0.97
CKS1BP3-201ENST00000600888 FOXK1P85037 733 aa8.96□□□□□ -0.98
CKS1BP3-201ENST00000600888 DSG2Q14126 1118 aa8.96□□□□□ -0.98
CKS1BP3-201ENST00000600888 PPP1R15BQ5SWA1 713 aa8.94□□□□□ -0.98
CKS1BP3-201ENST00000600888 PLPP6Q8IY26 295 aa8.93□□□□□ -0.98
CKS1BP3-201ENST00000600888 E2F4Q16254 413 aa8.9□□□□□ -0.98
CKS1BP3-201ENST00000600888 CAMK2BQ13554 666 aa8.88□□□□□ -0.99
CKS1BP3-201ENST00000600888 SLC34A2O95436 690 aa8.84□□□□□ -0.99
CKS1BP3-201ENST00000600888 P3H3Q8IVL6 736 aa8.84□□□□□ -0.99
CKS1BP3-201ENST00000600888 KCNV2Q8TDN2 545 aa8.84□□□□□ -0.99
CKS1BP3-201ENST00000600888 EMILIN3Q9NT22 766 aa8.84□□□□□ -0.99
CKS1BP3-201ENST00000600888 SNPHO15079 494 aa8.83□□□□□ -1
CKS1BP3-201ENST00000600888 HOXB3P14651 431 aaPredicted RBP8.83□□□□□ -1
CKS1BP3-201ENST00000600888 DOK7Q18PE1 504 aa8.82□□□□□ -1
CKS1BP3-201ENST00000600888 OXER1Q8TDS5 423 aa8.81□□□□□ -1
CKS1BP3-201ENST00000600888 PTCD2Q8WV60 388 aaKnown RBP8.81□□□□□ -1
CKS1BP3-201ENST00000600888 ARIH1Q9Y4X5 557 aaPredicted RBP8.81□□□□□ -1
CKS1BP3-201ENST00000600888 ARHGEF1Q92888 912 aaKnown RBP8.8□□□□□ -1
CKS1BP3-201ENST00000600888 UPF1Q92900 1129 aaKnown RBP eCLIP8.8□□□□□ -1
CKS1BP3-201ENST00000600888 DPYSL4O14531 572 aa8.78□□□□□ -1
CKS1BP3-201ENST00000600888 TBC1D12O60347 775 aa8.78□□□□□ -1
CKS1BP3-201ENST00000600888 MAP3K9P80192 1104 aa8.78□□□□□ -1
CKS1BP3-201ENST00000600888 RIMBP2O15034 1052 aa8.77□□□□□ -1.01
CKS1BP3-201ENST00000600888 ZNF710Q8N1W2 664 aa8.77□□□□□ -1.01
CKS1BP3-201ENST00000600888 ZSWIM6Q9HCJ5 1215 aa8.77□□□□□ -1.01
CKS1BP3-201ENST00000600888 PCDHGA4Q9Y5G9 962 aa8.77□□□□□ -1.01
CKS1BP3-201ENST00000600888 ARSIQ5FYB1 569 aa8.75□□□□□ -1.01
CKS1BP3-201ENST00000600888 GPR153Q6NV75 609 aa8.75□□□□□ -1.01
CKS1BP3-201ENST00000600888 SPDYE16A6NNV3 312 aaPredicted RBP8.72□□□□□ -1.01
CKS1BP3-201ENST00000600888 KHSRPQ92945 711 aaKnown RBP eCLIP8.72□□□□□ -1.01
CKS1BP3-201ENST00000600888 FAM163AQ96GL9 167 aaPredicted RBP8.72□□□□□ -1.01
CKS1BP3-201ENST00000600888 KDM4FA0A1W2PPD8 638 aa8.71□□□□□ -1.02
CKS1BP3-201ENST00000600888 EVI5O60447 810 aa8.71□□□□□ -1.02
CKS1BP3-201ENST00000600888 HOXB1P14653 301 aaPredicted RBP8.71□□□□□ -1.02
CKS1BP3-201ENST00000600888 PDIA6Q15084 440 aa8.71□□□□□ -1.02
CKS1BP3-201ENST00000600888 ANO8Q9HCE9 1232 aaPredicted RBP8.71□□□□□ -1.02
CKS1BP3-201ENST00000600888 ST18O60284 1047 aa8.7□□□□□ -1.02
CKS1BP3-201ENST00000600888 NUDT7P0C024 238 aa8.7□□□□□ -1.02
CKS1BP3-201ENST00000600888 NBR1Q14596 966 aa8.69□□□□□ -1.02
CKS1BP3-201ENST00000600888 SEMA3EO15041 775 aa8.68□□□□□ -1.02
CKS1BP3-201ENST00000600888 BCANQ96GW7 911 aa8.68□□□□□ -1.02
CKS1BP3-201ENST00000600888 ZNF316A6NFI3 1004 aaPredicted RBP8.66□□□□□ -1.02
CKS1BP3-201ENST00000600888 PTGER2P43116 358 aa8.66□□□□□ -1.02
CKS1BP3-201ENST00000600888 TESPA1A2RU30 521 aaPredicted RBP8.64□□□□□ -1.03
CKS1BP3-201ENST00000600888 LCE2DQ5TA82 110 aaPredicted RBP8.64□□□□□ -1.03
CKS1BP3-201ENST00000600888 LHX6Q9UPM6 363 aa8.64□□□□□ -1.03
CKS1BP3-201ENST00000600888 MLLT3P42568 568 aaPredicted RBP8.63□□□□□ -1.03
CKS1BP3-201ENST00000600888 DDX12PQ92771 950 aa8.62□□□□□ -1.03
CKS1BP3-201ENST00000600888 MARVELD3Q96A59 401 aa8.62□□□□□ -1.03
CKS1BP3-201ENST00000600888 GRXCR2A6NFK2 248 aa8.61□□□□□ -1.03
CKS1BP3-201ENST00000600888 EMP3P54852 163 aa8.6□□□□□ -1.03
CKS1BP3-201ENST00000600888 PHF14O94880 888 aa8.59□□□□□ -1.03
CKS1BP3-201ENST00000600888 FOSBP53539 338 aa8.59□□□□□ -1.03
CKS1BP3-201ENST00000600888 SMYD5Q6GMV2 418 aa8.59□□□□□ -1.03
CKS1BP3-201ENST00000600888 JPH4Q96JJ6 628 aa8.59□□□□□ -1.03
CKS1BP3-201ENST00000600888 PCDHGA10Q9Y5H3 936 aa8.59□□□□□ -1.03
CKS1BP3-201ENST00000600888 ERBB3P21860 1342 aa8.58□□□□□ -1.04
CKS1BP3-201ENST00000600888 PSDA5PKW4 1024 aaPredicted RBP8.58□□□□□ -1.04
CKS1BP3-201ENST00000600888 ZNF454Q8N9F8 522 aa8.58□□□□□ -1.04
CKS1BP3-201ENST00000600888 OSBPP22059 807 aa8.57□□□□□ -1.04
CKS1BP3-201ENST00000600888 EPAS1Q99814 870 aa8.57□□□□□ -1.04
CKS1BP3-201ENST00000600888 FAM205CA6NFA0 338 aa8.56□□□□□ -1.04
CKS1BP3-201ENST00000600888 TULP1O00294 542 aaPredicted RBP8.56□□□□□ -1.04
CKS1BP3-201ENST00000600888 VARS2Q5ST30 1063 aaKnown RBP8.56□□□□□ -1.04
CKS1BP3-201ENST00000600888 PPP4R3BQ5MIZ7 849 aa8.55□□□□□ -1.04
CKS1BP3-201ENST00000600888 TYW1BQ6NUM6 668 aa8.55□□□□□ -1.04
CKS1BP3-201ENST00000600888 ZDHHC16Q969W1 377 aa8.55□□□□□ -1.04
CKS1BP3-201ENST00000600888 DHX30Q7L2E3 1194 aaKnown RBP eCLIP8.54□□□□□ -1.04
CKS1BP3-201ENST00000600888 FBXW7Q969H0 707 aa8.54□□□□□ -1.04
CKS1BP3-201ENST00000600888 POTEB3A0JP26 581 aa8.53□□□□□ -1.04
CKS1BP3-201ENST00000600888 PRIM1P49642 420 aaKnown RBP8.53□□□□□ -1.04
CKS1BP3-201ENST00000600888 POTEBQ6S5H4 581 aa8.53□□□□□ -1.04
CKS1BP3-201ENST00000600888 HS3ST6Q96QI5 342 aa8.53□□□□□ -1.04
CKS1BP3-201ENST00000600888 EN1Q05925 392 aaPredicted RBP8.52□□□□□ -1.05
CKS1BP3-201ENST00000600888 RBM26Q5T8P6 1007 aaKnown RBP8.52□□□□□ -1.05
CKS1BP3-201ENST00000600888 RBM33Q96EV2 1170 aaKnown RBP8.52□□□□□ -1.05
CKS1BP3-201ENST00000600888 ADAM33Q9BZ11 813 aa8.52□□□□□ -1.05
CKS1BP3-201ENST00000600888 LMOD2Q6P5Q4 547 aa8.5□□□□□ -1.05
CKS1BP3-201ENST00000600888 ZNF687Q8N1G0 1237 aa8.5□□□□□ -1.05
CKS1BP3-201ENST00000600888 MAP3K7O43318 606 aa8.49□□□□□ -1.05
CKS1BP3-201ENST00000600888 C6orf132Q5T0Z8 1188 aa8.49□□□□□ -1.05
CKS1BP3-201ENST00000600888 BCL2L12Q9HB09 334 aa8.49□□□□□ -1.05
CKS1BP3-201ENST00000600888 NUTM2FA1L443 756 aa8.47□□□□□ -1.05
CKS1BP3-201ENST00000600888 TSR1Q2NL82 804 aaKnown RBP8.47□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 64.1 ms