RNA–Protein interactions for RNA: ENST00000600841.1

NOTCH3-205, Transcript of notch 3, humanhuman

TSL 2

Gene NOTCH3, Length 748 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NOTCH3-205ENST00000600841 ZMYM4Q5VZL5 1548 aa26.92■■□□□ 1.9
NOTCH3-205ENST00000600841 POGZQ7Z3K3 1410 aa26.91■■□□□ 1.9
NOTCH3-205ENST00000600841 ARHGEF40Q8TER5 1519 aa26.91■■□□□ 1.9
NOTCH3-205ENST00000600841 CDC42BPBQ9Y5S2 1711 aa26.91■■□□□ 1.9
NOTCH3-205ENST00000600841 PREX2Q70Z35 1606 aa26.9■■□□□ 1.9
NOTCH3-205ENST00000600841 MAGI2Q86UL8 1455 aa26.87■■□□□ 1.89
NOTCH3-205ENST00000600841 MTUS2Q5JR59 1369 aa26.86■■□□□ 1.89
NOTCH3-205ENST00000600841 CDC42BPAQ5VT25 1732 aa26.86■■□□□ 1.89
NOTCH3-205ENST00000600841 ZFYVE16Q7Z3T8 1539 aa26.85■■□□□ 1.89
NOTCH3-205ENST00000600841 ARID4BQ4LE39 1312 aaPredicted RBP26.84■■□□□ 1.89
NOTCH3-205ENST00000600841 YEATS2Q9ULM3 1422 aa26.82■■□□□ 1.88
NOTCH3-205ENST00000600841 ZNF518AQ6AHZ1 1483 aa26.81■■□□□ 1.88
NOTCH3-205ENST00000600841 VPS8Q8N3P4 1428 aa26.78■■□□□ 1.88
NOTCH3-205ENST00000600841 EHBP1L1Q8N3D4 1523 aa26.78■■□□□ 1.88
NOTCH3-205ENST00000600841 GPATCH8Q9UKJ3 1502 aaKnown RBP26.78■■□□□ 1.88
NOTCH3-205ENST00000600841 BCORL1Q5H9F3 1711 aa26.77■■□□□ 1.88
NOTCH3-205ENST00000600841 ABCC1P33527 1531 aa26.77■■□□□ 1.88
NOTCH3-205ENST00000600841 AFAP1Q8N556 730 aa26.77■■□□□ 1.88
NOTCH3-205ENST00000600841 ADAMTSL3P82987 1691 aa26.76■■□□□ 1.87
NOTCH3-205ENST00000600841 KDM5CP41229 1560 aa26.76■■□□□ 1.87
NOTCH3-205ENST00000600841 CCNB3Q8WWL7 1395 aa26.75■■□□□ 1.87
NOTCH3-205ENST00000600841 ITSN2Q9NZM3 1697 aa26.74■■□□□ 1.87
NOTCH3-205ENST00000600841 ZNF777Q9ULD5 760 aaPredicted RBP26.73■■□□□ 1.87
NOTCH3-205ENST00000600841 ARHGEF12Q9NZN5 1544 aa26.73■■□□□ 1.87
NOTCH3-205ENST00000600841 ATP10AO60312 1499 aa26.71■■□□□ 1.87
NOTCH3-205ENST00000600841 CFDP1Q9UEE9 299 aaPredicted RBP26.71■■□□□ 1.87
NOTCH3-205ENST00000600841 MYT1LQ9UL68 1186 aa26.71■■□□□ 1.87
NOTCH3-205ENST00000600841 TRAPPC8Q9Y2L5 1435 aa26.71■■□□□ 1.87
NOTCH3-205ENST00000600841 SAMD9LQ8IVG5 1584 aa26.71■■□□□ 1.87
NOTCH3-205ENST00000600841 HECW2Q9P2P5 1572 aa26.71■■□□□ 1.87
NOTCH3-205ENST00000600841 TIAM1Q13009 1591 aa26.7■■□□□ 1.86
NOTCH3-205ENST00000600841 C9orf84Q5VXU9 1444 aa26.69■■□□□ 1.86
NOTCH3-205ENST00000600841 SIGLEC1Q9BZZ2 1709 aa26.69■■□□□ 1.86
NOTCH3-205ENST00000600841 MADDQ8WXG6 1647 aa26.68■■□□□ 1.86
NOTCH3-205ENST00000600841 MLH3Q9UHC1 1453 aa26.67■■□□□ 1.86
NOTCH3-205ENST00000600841 PTPRMP28827 1452 aa26.66■■□□□ 1.86
NOTCH3-205ENST00000600841 SYCP2Q9BX26 1530 aa26.65■■□□□ 1.86
NOTCH3-205ENST00000600841 PLEKHH2Q8IVE3 1493 aa26.65■■□□□ 1.86
NOTCH3-205ENST00000600841 SUPT6HQ7KZ85 1726 aaKnown RBP26.65■■□□□ 1.86
NOTCH3-205ENST00000600841 KIAA1107Q9UPP5 1409 aa26.63■■□□□ 1.85
NOTCH3-205ENST00000600841 DIP2CQ9Y2E4 1556 aa26.63■■□□□ 1.85
NOTCH3-205ENST00000600841 HNRNPMP52272 730 aaKnown RBP eCLIP26.61■■□□□ 1.85
NOTCH3-205ENST00000600841 NCOA2Q15596 1464 aa26.61■■□□□ 1.85
NOTCH3-205ENST00000600841 ABCA6Q8N139 1617 aa26.61■■□□□ 1.85
NOTCH3-205ENST00000600841 MLECQ14165 292 aa26.6■■□□□ 1.85
NOTCH3-205ENST00000600841 RIMS1Q86UR5 1692 aaKnown RBP26.6■■□□□ 1.85
NOTCH3-205ENST00000600841 LRRC9Q6ZRR7 1453 aa26.59■■□□□ 1.85
NOTCH3-205ENST00000600841 MAP3K1Q13233 1512 aa26.59■■□□□ 1.85
NOTCH3-205ENST00000600841 KIDINS220Q9ULH0 1771 aa26.58■■□□□ 1.85
NOTCH3-205ENST00000600841 REREQ9P2R6 1566 aa26.58■■□□□ 1.85
NOTCH3-205ENST00000600841 SPAG9O60271 1321 aaKnown RBP26.56■■□□□ 1.84
NOTCH3-205ENST00000600841 FER1L4A9Z1Z3 1794 aa26.55■■□□□ 1.84
NOTCH3-205ENST00000600841 ZNF644Q9H582 1327 aaPredicted RBP26.54■■□□□ 1.84
NOTCH3-205ENST00000600841 ATP7AQ04656 1500 aa26.49■■□□□ 1.83
NOTCH3-205ENST00000600841 APLP2Q06481 763 aa26.49■■□□□ 1.83
NOTCH3-205ENST00000600841 KANK4Q5T7N3 995 aaPredicted RBP26.49■■□□□ 1.83
NOTCH3-205ENST00000600841 AGLP35573 1532 aa26.49■■□□□ 1.83
NOTCH3-205ENST00000600841 INO80Q9ULG1 1556 aaPredicted RBP26.48■■□□□ 1.83
NOTCH3-205ENST00000600841 MBD5Q9P267 1494 aa26.48■■□□□ 1.83
NOTCH3-205ENST00000600841 CAMSAP2Q08AD1 1489 aa26.46■■□□□ 1.83
NOTCH3-205ENST00000600841 PLPPR3Q6T4P5 718 aa26.45■■□□□ 1.82
NOTCH3-205ENST00000600841 CCDC141Q6ZP82 1450 aa26.4■■□□□ 1.82
NOTCH3-205ENST00000600841 RSPH4AQ5TD94 716 aa26.39■■□□□ 1.82
NOTCH3-205ENST00000600841 A2MP01023 1474 aa26.38■■□□□ 1.81
NOTCH3-205ENST00000600841 RTEL1-TNFRSF6BF6WH68 1400 aa26.38■■□□□ 1.81
NOTCH3-205ENST00000600841 ADGBQ8N7X0 1667 aa26.38■■□□□ 1.81
NOTCH3-205ENST00000600841 ESF1Q9H501 851 aaKnown RBP26.37■■□□□ 1.81
NOTCH3-205ENST00000600841 MYOM3Q5VTT5 1437 aa26.37■■□□□ 1.81
NOTCH3-205ENST00000600841 PLXNC1O60486 1568 aa26.37■■□□□ 1.81
NOTCH3-205ENST00000600841 ARHGEF5Q12774 1597 aa26.35■■□□□ 1.81
NOTCH3-205ENST00000600841 MIA2Q96PC5 1412 aa26.34■■□□□ 1.81
NOTCH3-205ENST00000600841 LMTK3Q96Q04 1460 aa26.34■■□□□ 1.81
NOTCH3-205ENST00000600841 CEBPAP49715 358 aaPredicted RBP26.32■■□□□ 1.8
NOTCH3-205ENST00000600841 CNTLNQ9NXG0 1405 aa26.31■■□□□ 1.8
NOTCH3-205ENST00000600841 TSPY4P0CV99 314 aa26.29■■□□□ 1.8
NOTCH3-205ENST00000600841 TSPY10P0CW01 314 aa26.29■■□□□ 1.8
NOTCH3-205ENST00000600841 C3P01024 1663 aa26.27■■□□□ 1.8
NOTCH3-205ENST00000600841 DHX29Q7Z478 1369 aaKnown RBP26.26■■□□□ 1.79
NOTCH3-205ENST00000600841 SETD1BQ9UPS6 1966 aaKnown RBP26.26■■□□□ 1.79
NOTCH3-205ENST00000600841 GGT6Q6P531 493 aa26.24■■□□□ 1.79
NOTCH3-205ENST00000600841 PREX1Q8TCU6 1659 aa26.24■■□□□ 1.79
NOTCH3-205ENST00000600841 MROH2AA6NES4 1674 aa26.22■■□□□ 1.79
NOTCH3-205ENST00000600841 MAST1Q9Y2H9 1570 aa26.21■■□□□ 1.79
NOTCH3-205ENST00000600841 PTPN23Q9H3S7 1636 aa26.21■■□□□ 1.79
NOTCH3-205ENST00000600841 HSPA2P54652 639 aa26.2■■□□□ 1.78
NOTCH3-205ENST00000600841 CLTCQ00610 1675 aaKnown RBP26.19■■□□□ 1.78
NOTCH3-205ENST00000600841 PPP6R1Q9UPN7 881 aa26.19■■□□□ 1.78
NOTCH3-205ENST00000600841 FGD6Q6ZV73 1430 aa26.18■■□□□ 1.78
NOTCH3-205ENST00000600841 ZMYM3Q14202 1370 aa26.18■■□□□ 1.78
NOTCH3-205ENST00000600841 UHRF1BP1Q6BDS2 1440 aa26.17■■□□□ 1.78
NOTCH3-205ENST00000600841 KIF3BO15066 747 aa26.17■■□□□ 1.78
NOTCH3-205ENST00000600841 TCOF1Q13428 1488 aaKnown RBP26.13■■□□□ 1.77
NOTCH3-205ENST00000600841 NPATQ14207 1427 aa26.12■■□□□ 1.77
NOTCH3-205ENST00000600841 CROCC2H7BZ55 1655 aa26.11■■□□□ 1.77
NOTCH3-205ENST00000600841 ABCC5O15440 1437 aa26.11■■□□□ 1.77
NOTCH3-205ENST00000600841 SHANK2Q9UPX8 1470 aa26.11■■□□□ 1.77
NOTCH3-205ENST00000600841 DAPK1P53355 1430 aa26.08■■□□□ 1.77
NOTCH3-205ENST00000600841 DNMT1P26358 1616 aaKnown RBP26.08■■□□□ 1.77
NOTCH3-205ENST00000600841 FAM135AQ9P2D6 1515 aa26.08■■□□□ 1.77
NOTCH3-205ENST00000600841 KDM5DQ9BY66 1539 aa26.06■■□□□ 1.76
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms