RNA–Protein interactions for RNA: ENST00000599165.5

LIG1-217, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-217ENST00000599165 PREX2Q70Z35 1606 aa19.68■□□□□ 0.74
LIG1-217ENST00000599165 SIGLEC1Q9BZZ2 1709 aa19.68■□□□□ 0.74
LIG1-217ENST00000599165 CDC42BPAQ5VT25 1732 aa19.67■□□□□ 0.74
LIG1-217ENST00000599165 POGZQ7Z3K3 1410 aa19.66■□□□□ 0.74
LIG1-217ENST00000599165 SCAPERQ9BY12 1400 aa19.65■□□□□ 0.74
LIG1-217ENST00000599165 ARHGAP5Q13017 1502 aa19.64■□□□□ 0.73
LIG1-217ENST00000599165 YEATS2Q9ULM3 1422 aa19.63■□□□□ 0.73
LIG1-217ENST00000599165 ADAMTSL3P82987 1691 aa19.62■□□□□ 0.73
LIG1-217ENST00000599165 EFCAB2Q5VUJ9 269 aa19.62■□□□□ 0.73
LIG1-217ENST00000599165 ZFYVE16Q7Z3T8 1539 aa19.61■□□□□ 0.73
LIG1-217ENST00000599165 ARHGEF12Q9NZN5 1544 aa19.61■□□□□ 0.73
LIG1-217ENST00000599165 BCORL1Q5H9F3 1711 aa19.6■□□□□ 0.73
LIG1-217ENST00000599165 KDM5CP41229 1560 aa19.59■□□□□ 0.73
LIG1-217ENST00000599165 ABCC1P33527 1531 aa19.59■□□□□ 0.73
LIG1-217ENST00000599165 MAGI2Q86UL8 1455 aa19.58■□□□□ 0.72
LIG1-217ENST00000599165 GPATCH8Q9UKJ3 1502 aaKnown RBP19.57■□□□□ 0.72
LIG1-217ENST00000599165 ITSN2Q9NZM3 1697 aa19.57■□□□□ 0.72
LIG1-217ENST00000599165 SAMD9LQ8IVG5 1584 aa19.55■□□□□ 0.72
LIG1-217ENST00000599165 MADDQ8WXG6 1647 aa19.54■□□□□ 0.72
LIG1-217ENST00000599165 ZNF518AQ6AHZ1 1483 aa19.54■□□□□ 0.72
LIG1-217ENST00000599165 TRAPPC8Q9Y2L5 1435 aa19.53■□□□□ 0.72
LIG1-217ENST00000599165 EHBP1L1Q8N3D4 1523 aa19.53■□□□□ 0.72
LIG1-217ENST00000599165 AFAP1Q8N556 730 aa19.52■□□□□ 0.72
LIG1-217ENST00000599165 TIAM1Q13009 1591 aa19.52■□□□□ 0.71
LIG1-217ENST00000599165 VPS8Q8N3P4 1428 aa19.51■□□□□ 0.71
LIG1-217ENST00000599165 HECW2Q9P2P5 1572 aa19.51■□□□□ 0.71
LIG1-217ENST00000599165 MTUS2Q5JR59 1369 aa19.5■□□□□ 0.71
LIG1-217ENST00000599165 ABCA6Q8N139 1617 aa19.5■□□□□ 0.71
LIG1-217ENST00000599165 DIP2CQ9Y2E4 1556 aa19.49■□□□□ 0.71
LIG1-217ENST00000599165 ATP10AO60312 1499 aa19.48■□□□□ 0.71
LIG1-217ENST00000599165 PTPRMP28827 1452 aa19.48■□□□□ 0.71
LIG1-217ENST00000599165 MLH3Q9UHC1 1453 aa19.48■□□□□ 0.71
LIG1-217ENST00000599165 KIDINS220Q9ULH0 1771 aa19.47■□□□□ 0.71
LIG1-217ENST00000599165 SYCP2Q9BX26 1530 aa19.47■□□□□ 0.71
LIG1-217ENST00000599165 C9orf84Q5VXU9 1444 aa19.46■□□□□ 0.71
LIG1-217ENST00000599165 RIMS1Q86UR5 1692 aaKnown RBP19.46■□□□□ 0.71
LIG1-217ENST00000599165 ARID4BQ4LE39 1312 aaPredicted RBP19.45■□□□□ 0.7
LIG1-217ENST00000599165 CCNB3Q8WWL7 1395 aa19.44■□□□□ 0.7
LIG1-217ENST00000599165 REREQ9P2R6 1566 aa19.44■□□□□ 0.7
LIG1-217ENST00000599165 SUPT6HQ7KZ85 1726 aaKnown RBP19.42■□□□□ 0.7
LIG1-217ENST00000599165 NCOA2Q15596 1464 aa19.42■□□□□ 0.7
LIG1-217ENST00000599165 KIAA1107Q9UPP5 1409 aa19.42■□□□□ 0.7
LIG1-217ENST00000599165 ZNF777Q9ULD5 760 aaPredicted RBP19.41■□□□□ 0.7
LIG1-217ENST00000599165 FER1L4A9Z1Z3 1794 aa19.41■□□□□ 0.7
LIG1-217ENST00000599165 CFDP1Q9UEE9 299 aaPredicted RBP19.4■□□□□ 0.7
LIG1-217ENST00000599165 LRRC9Q6ZRR7 1453 aa19.4■□□□□ 0.7
LIG1-217ENST00000599165 MAP3K1Q13233 1512 aa19.4■□□□□ 0.7
LIG1-217ENST00000599165 INO80Q9ULG1 1556 aaPredicted RBP19.4■□□□□ 0.7
LIG1-217ENST00000599165 ZNF644Q9H582 1327 aaPredicted RBP19.39■□□□□ 0.69
LIG1-217ENST00000599165 HNRNPMP52272 730 aaKnown RBP eCLIP19.38■□□□□ 0.69
LIG1-217ENST00000599165 PLEKHH2Q8IVE3 1493 aa19.38■□□□□ 0.69
LIG1-217ENST00000599165 MBD5Q9P267 1494 aa19.38■□□□□ 0.69
LIG1-217ENST00000599165 AGLP35573 1532 aa19.36■□□□□ 0.69
LIG1-217ENST00000599165 KANK4Q5T7N3 995 aaPredicted RBP19.36■□□□□ 0.69
LIG1-217ENST00000599165 MLECQ14165 292 aa19.35■□□□□ 0.69
LIG1-217ENST00000599165 ATP7AQ04656 1500 aa19.35■□□□□ 0.69
LIG1-217ENST00000599165 PLXNC1O60486 1568 aa19.32■□□□□ 0.68
LIG1-217ENST00000599165 CAMSAP2Q08AD1 1489 aa19.31■□□□□ 0.68
LIG1-217ENST00000599165 SPAG9O60271 1321 aaKnown RBP19.3■□□□□ 0.68
LIG1-217ENST00000599165 LMTK3Q96Q04 1460 aa19.3■□□□□ 0.68
LIG1-217ENST00000599165 MYT1LQ9UL68 1186 aa19.29■□□□□ 0.68
LIG1-217ENST00000599165 ADGBQ8N7X0 1667 aa19.27■□□□□ 0.67
LIG1-217ENST00000599165 ARHGEF5Q12774 1597 aa19.25■□□□□ 0.67
LIG1-217ENST00000599165 C3P01024 1663 aa19.24■□□□□ 0.67
LIG1-217ENST00000599165 A2MP01023 1474 aa19.24■□□□□ 0.67
LIG1-217ENST00000599165 CCDC141Q6ZP82 1450 aa19.24■□□□□ 0.67
LIG1-217ENST00000599165 RTEL1-TNFRSF6BF6WH68 1400 aa19.23■□□□□ 0.67
LIG1-217ENST00000599165 MYOM3Q5VTT5 1437 aa19.22■□□□□ 0.67
LIG1-217ENST00000599165 CEBPAP49715 358 aaPredicted RBP19.21■□□□□ 0.67
LIG1-217ENST00000599165 PLPPR3Q6T4P5 718 aa19.2■□□□□ 0.66
LIG1-217ENST00000599165 MIA2Q96PC5 1412 aa19.18■□□□□ 0.66
LIG1-217ENST00000599165 PREX1Q8TCU6 1659 aa19.18■□□□□ 0.66
LIG1-217ENST00000599165 MROH2AA6NES4 1674 aa19.17■□□□□ 0.66
LIG1-217ENST00000599165 MAST1Q9Y2H9 1570 aa19.17■□□□□ 0.66
LIG1-217ENST00000599165 SETD1BQ9UPS6 1966 aaKnown RBP19.15■□□□□ 0.66
LIG1-217ENST00000599165 CLTCQ00610 1675 aaKnown RBP19.15■□□□□ 0.66
LIG1-217ENST00000599165 DHX29Q7Z478 1369 aaKnown RBP19.14■□□□□ 0.65
LIG1-217ENST00000599165 HSPA2P54652 639 aa19.13■□□□□ 0.65
LIG1-217ENST00000599165 RSPH4AQ5TD94 716 aa19.13■□□□□ 0.65
LIG1-217ENST00000599165 CNTLNQ9NXG0 1405 aa19.13■□□□□ 0.65
LIG1-217ENST00000599165 PTPN23Q9H3S7 1636 aa19.13■□□□□ 0.65
LIG1-217ENST00000599165 CROCC2H7BZ55 1655 aa19.11■□□□□ 0.65
LIG1-217ENST00000599165 TCOF1Q13428 1488 aaKnown RBP19.1■□□□□ 0.65
LIG1-217ENST00000599165 FGD6Q6ZV73 1430 aa19.09■□□□□ 0.65
LIG1-217ENST00000599165 ZMYM3Q14202 1370 aa19.08■□□□□ 0.65
LIG1-217ENST00000599165 APLP2Q06481 763 aa19.08■□□□□ 0.64
LIG1-217ENST00000599165 ABCC5O15440 1437 aa19.08■□□□□ 0.64
LIG1-217ENST00000599165 STRCQ7RTU9 1775 aa19.06■□□□□ 0.64
LIG1-217ENST00000599165 GGT6Q6P531 493 aa19.06■□□□□ 0.64
LIG1-217ENST00000599165 DNMT1P26358 1616 aaKnown RBP19.06■□□□□ 0.64
LIG1-217ENST00000599165 NPATQ14207 1427 aa19.05■□□□□ 0.64
LIG1-217ENST00000599165 SHANK2Q9UPX8 1470 aa19.04■□□□□ 0.64
LIG1-217ENST00000599165 RNF17Q9BXT8 1623 aaKnown RBP19.04■□□□□ 0.64
LIG1-217ENST00000599165 TSPY4P0CV99 314 aa19.04■□□□□ 0.64
LIG1-217ENST00000599165 TSPY10P0CW01 314 aa19.04■□□□□ 0.64
LIG1-217ENST00000599165 PTPRKQ15262 1439 aa19.04■□□□□ 0.64
LIG1-217ENST00000599165 UHRF1BP1Q6BDS2 1440 aa19.04■□□□□ 0.64
LIG1-217ENST00000599165 MROH1Q8NDA8 1641 aa19.03■□□□□ 0.64
LIG1-217ENST00000599165 ESF1Q9H501 851 aaKnown RBP19.03■□□□□ 0.64
LIG1-217ENST00000599165 EIF2AK4Q9P2K8 1649 aaKnown RBP19.03■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms