RNA–Protein interactions for RNA: ENST00000598471.1

UPF1-206, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 582 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-206ENST00000598471 TCOF1Q13428 1488 aaKnown RBP23.43■■□□□ 1.34
UPF1-206ENST00000598471 DIP2BQ9P265 1576 aa23.42■■□□□ 1.34
UPF1-206ENST00000598471 KIF13AQ9H1H9 1805 aa23.42■■□□□ 1.34
UPF1-206ENST00000598471 PLCH2O75038 1416 aa23.39■■□□□ 1.33
UPF1-206ENST00000598471 ARHGAP5Q13017 1502 aa23.38■■□□□ 1.33
UPF1-206ENST00000598471 ARAP3Q8WWN8 1544 aa23.38■■□□□ 1.33
UPF1-206ENST00000598471 CAMSAP2Q08AD1 1489 aa23.36■■□□□ 1.33
UPF1-206ENST00000598471 CDC42BPBQ9Y5S2 1711 aa23.36■■□□□ 1.33
UPF1-206ENST00000598471 ZNF777Q9ULD5 760 aaPredicted RBP23.35■■□□□ 1.33
UPF1-206ENST00000598471 GLI2P10070 1586 aa23.35■■□□□ 1.33
UPF1-206ENST00000598471 EFCAB2Q5VUJ9 269 aa23.33■■□□□ 1.33
UPF1-206ENST00000598471 CD109Q6YHK3 1445 aa23.32■■□□□ 1.32
UPF1-206ENST00000598471 PLEKHH2Q8IVE3 1493 aa23.31■■□□□ 1.32
UPF1-206ENST00000598471 ITGAEP38570 1179 aa23.3■■□□□ 1.32
UPF1-206ENST00000598471 ZNF644Q9H582 1327 aaPredicted RBP23.29■■□□□ 1.32
UPF1-206ENST00000598471 SAMD9LQ8IVG5 1584 aa23.28■■□□□ 1.32
UPF1-206ENST00000598471 CFAP74Q9C0B2 1584 aa23.27■■□□□ 1.32
UPF1-206ENST00000598471 DNMT1P26358 1616 aaKnown RBP23.26■■□□□ 1.31
UPF1-206ENST00000598471 FANCAO15360 1455 aa23.26■■□□□ 1.31
UPF1-206ENST00000598471 TSPOAP1O95153 1857 aa23.26■■□□□ 1.31
UPF1-206ENST00000598471 MAP3K4Q9Y6R4 1608 aa23.26■■□□□ 1.31
UPF1-206ENST00000598471 DAPK1P53355 1430 aa23.25■■□□□ 1.31
UPF1-206ENST00000598471 KIAA1107Q9UPP5 1409 aa23.25■■□□□ 1.31
UPF1-206ENST00000598471 ARHGEF5Q12774 1597 aa23.23■■□□□ 1.31
UPF1-206ENST00000598471 RSPH4AQ5TD94 716 aa23.22■■□□□ 1.31
UPF1-206ENST00000598471 ABCC1P33527 1531 aa23.22■■□□□ 1.31
UPF1-206ENST00000598471 SYCP2Q9BX26 1530 aa23.21■■□□□ 1.31
UPF1-206ENST00000598471 ABCC5O15440 1437 aa23.2■■□□□ 1.3
UPF1-206ENST00000598471 CCDC141Q6ZP82 1450 aa23.19■■□□□ 1.3
UPF1-206ENST00000598471 NEO1Q92859 1461 aa23.18■■□□□ 1.3
UPF1-206ENST00000598471 MBD5Q9P267 1494 aa23.18■■□□□ 1.3
UPF1-206ENST00000598471 SHANK2Q9UPX8 1470 aa23.17■■□□□ 1.3
UPF1-206ENST00000598471 CROCC2H7BZ55 1655 aa23.17■■□□□ 1.3
UPF1-206ENST00000598471 PPRC1Q5VV67 1664 aaKnown RBP23.17■■□□□ 1.3
UPF1-206ENST00000598471 HNRNPMP52272 730 aaKnown RBP eCLIP23.17■■□□□ 1.3
UPF1-206ENST00000598471 ADGRL1O94910 1474 aa23.17■■□□□ 1.3
UPF1-206ENST00000598471 PTPRKQ15262 1439 aa23.16■■□□□ 1.3
UPF1-206ENST00000598471 AKNAQ7Z591 1439 aa23.16■■□□□ 1.3
UPF1-206ENST00000598471 TEX14Q8IWB6 1497 aa23.16■■□□□ 1.3
UPF1-206ENST00000598471 TSPY4P0CV99 314 aa23.14■■□□□ 1.29
UPF1-206ENST00000598471 TSPY10P0CW01 314 aa23.14■■□□□ 1.29
UPF1-206ENST00000598471 ROCK1Q13464 1354 aa23.13■■□□□ 1.29
UPF1-206ENST00000598471 COL17A1Q9UMD9 1497 aaPredicted RBP23.12■■□□□ 1.29
UPF1-206ENST00000598471 C9orf84Q5VXU9 1444 aa23.12■■□□□ 1.29
UPF1-206ENST00000598471 ARHGEF12Q9NZN5 1544 aa23.12■■□□□ 1.29
UPF1-206ENST00000598471 SCAPERQ9BY12 1400 aa23.11■■□□□ 1.29
UPF1-206ENST00000598471 CHIC2Q9UKJ5 165 aa23.11■■□□□ 1.29
UPF1-206ENST00000598471 ADGBQ8N7X0 1667 aa23.11■■□□□ 1.29
UPF1-206ENST00000598471 ADGRL2O95490 1459 aa23.1■■□□□ 1.29
UPF1-206ENST00000598471 HFM1A2PYH4 1435 aa23.09■■□□□ 1.29
UPF1-206ENST00000598471 MAST1Q9Y2H9 1570 aa23.09■■□□□ 1.29
UPF1-206ENST00000598471 SETD5Q9C0A6 1442 aa23.08■■□□□ 1.29
UPF1-206ENST00000598471 ANKRD30AQ9BXX3 1397 aa23.08■■□□□ 1.29
UPF1-206ENST00000598471 TRAPPC8Q9Y2L5 1435 aa23.07■■□□□ 1.28
UPF1-206ENST00000598471 ZNF518AQ6AHZ1 1483 aa23.05■■□□□ 1.28
UPF1-206ENST00000598471 GCC2Q8IWJ2 1684 aa23.04■■□□□ 1.28
UPF1-206ENST00000598471 NAIPQ13075 1403 aa23.04■■□□□ 1.28
UPF1-206ENST00000598471 DENND4BO75064 1496 aaPredicted RBP23.04■■□□□ 1.28
UPF1-206ENST00000598471 NCOA1Q15788 1441 aa23.03■■□□□ 1.28
UPF1-206ENST00000598471 POGZQ7Z3K3 1410 aa23.03■■□□□ 1.28
UPF1-206ENST00000598471 RRP7BPQ9NSQ0 103 aa23.03■■□□□ 1.28
UPF1-206ENST00000598471 SPAG9O60271 1321 aaKnown RBP23.02■■□□□ 1.28
UPF1-206ENST00000598471 RAB3GAP2Q9H2M9 1393 aa23.01■■□□□ 1.27
UPF1-206ENST00000598471 KDM6BO15054 1643 aa23.01■■□□□ 1.27
UPF1-206ENST00000598471 RTEL1-TNFRSF6BF6WH68 1400 aa23.01■■□□□ 1.27
UPF1-206ENST00000598471 RAPGEF3O95398 923 aa23.01■■□□□ 1.27
UPF1-206ENST00000598471 PLXNC1O60486 1568 aa22.99■■□□□ 1.27
UPF1-206ENST00000598471 HRCP23327 699 aa22.99■■□□□ 1.27
UPF1-206ENST00000598471 AFAP1Q8N556 730 aa22.99■■□□□ 1.27
UPF1-206ENST00000598471 ZFYVE16Q7Z3T8 1539 aa22.98■■□□□ 1.27
UPF1-206ENST00000598471 KDM5CP41229 1560 aa22.97■■□□□ 1.27
UPF1-206ENST00000598471 ACIN1Q9UKV3 1341 aaKnown RBP22.97■■□□□ 1.27
UPF1-206ENST00000598471 KIF15Q9NS87 1388 aa22.97■■□□□ 1.27
UPF1-206ENST00000598471 INO80Q9ULG1 1556 aaPredicted RBP22.97■■□□□ 1.27
UPF1-206ENST00000598471 ATP7AQ04656 1500 aa22.96■■□□□ 1.27
UPF1-206ENST00000598471 MYT1LQ9UL68 1186 aa22.95■■□□□ 1.26
UPF1-206ENST00000598471 HECW2Q9P2P5 1572 aa22.93■■□□□ 1.26
UPF1-206ENST00000598471 MLH3Q9UHC1 1453 aa22.92■■□□□ 1.26
UPF1-206ENST00000598471 RICTORQ6R327 1708 aa22.92■■□□□ 1.26
UPF1-206ENST00000598471 ANKRD50Q9ULJ7 1429 aa22.91■■□□□ 1.26
UPF1-206ENST00000598471 DUOX2Q9NRD8 1548 aa22.91■■□□□ 1.26
UPF1-206ENST00000598471 FRMPD1Q5SYB0 1578 aa22.88■■□□□ 1.25
UPF1-206ENST00000598471 ZMYM4Q5VZL5 1548 aa22.87■■□□□ 1.25
UPF1-206ENST00000598471 KIDINS220Q9ULH0 1771 aa22.86■■□□□ 1.25
UPF1-206ENST00000598471 ERBINQ96RT1 1412 aa22.86■■□□□ 1.25
UPF1-206ENST00000598471 CCER1Q8TC90 406 aaPredicted RBP22.85■■□□□ 1.25
UPF1-206ENST00000598471 MAGI2Q86UL8 1455 aa22.85■■□□□ 1.25
UPF1-206ENST00000598471 TRIM52Q96A61 297 aa22.8■■□□□ 1.24
UPF1-206ENST00000598471 DHX57Q6P158 1386 aaKnown RBP22.79■■□□□ 1.24
UPF1-206ENST00000598471 DHX29Q7Z478 1369 aaKnown RBP22.79■■□□□ 1.24
UPF1-206ENST00000598471 A2MP01023 1474 aa22.79■■□□□ 1.24
UPF1-206ENST00000598471 ABCA6Q8N139 1617 aa22.79■■□□□ 1.24
UPF1-206ENST00000598471 DIP2CQ9Y2E4 1556 aa22.77■■□□□ 1.24
UPF1-206ENST00000598471 EIF2AK4Q9P2K8 1649 aaKnown RBP22.76■■□□□ 1.23
UPF1-206ENST00000598471 YEATS2Q9ULM3 1422 aa22.74■■□□□ 1.23
UPF1-206ENST00000598471 UNC13BO14795 1591 aa22.73■■□□□ 1.23
UPF1-206ENST00000598471 CLSPNQ9HAW4 1339 aa22.72■■□□□ 1.23
UPF1-206ENST00000598471 ARHGEF40Q8TER5 1519 aa22.72■■□□□ 1.23
UPF1-206ENST00000598471 KDM5DQ9BY66 1539 aa22.72■■□□□ 1.23
UPF1-206ENST00000598471 ATP10AO60312 1499 aa22.71■■□□□ 1.23
Retrieved 100 of 20,778 RNA–protein pairs in 13.2 ms