RNA–Protein interactions for RNA: ENST00000596708.1

CHMP2A-202, Transcript of charged multivesicular body protein 2A, humanhuman

TSL 3

Gene CHMP2A, Length 687 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP2A-202ENST00000596708 SCAPERQ9BY12 1400 aa17.39■□□□□ 0.38
CHMP2A-202ENST00000596708 YEATS2Q9ULM3 1422 aa17.38■□□□□ 0.37
CHMP2A-202ENST00000596708 SIGLEC1Q9BZZ2 1709 aa17.38■□□□□ 0.37
CHMP2A-202ENST00000596708 MLECQ14165 292 aa17.38■□□□□ 0.37
CHMP2A-202ENST00000596708 LRRIQ1Q96JM4 1722 aa17.38■□□□□ 0.37
CHMP2A-202ENST00000596708 MAGI2Q86UL8 1455 aa17.37■□□□□ 0.37
CHMP2A-202ENST00000596708 EFCAB2Q5VUJ9 269 aa17.37■□□□□ 0.37
CHMP2A-202ENST00000596708 FER1L4A9Z1Z3 1794 aa17.37■□□□□ 0.37
CHMP2A-202ENST00000596708 PCF11O94913 1555 aaKnown RBP17.36■□□□□ 0.37
CHMP2A-202ENST00000596708 KIF14Q15058 1648 aa17.36■□□□□ 0.37
CHMP2A-202ENST00000596708 LMTK3Q96Q04 1460 aa17.33■□□□□ 0.37
CHMP2A-202ENST00000596708 CLIP1P30622 1438 aa17.32■□□□□ 0.36
CHMP2A-202ENST00000596708 MYT1LQ9UL68 1186 aa17.32■□□□□ 0.36
CHMP2A-202ENST00000596708 TROQ12816 1431 aaPredicted RBP17.31■□□□□ 0.36
CHMP2A-202ENST00000596708 ARHGAP5Q13017 1502 aa17.31■□□□□ 0.36
CHMP2A-202ENST00000596708 ATP10AO60312 1499 aa17.31■□□□□ 0.36
CHMP2A-202ENST00000596708 CDC42BPBQ9Y5S2 1711 aa17.3■□□□□ 0.36
CHMP2A-202ENST00000596708 FBXO41Q8TF61 875 aa17.3■□□□□ 0.36
CHMP2A-202ENST00000596708 HSPA2P54652 639 aa17.29■□□□□ 0.36
CHMP2A-202ENST00000596708 C9orf84Q5VXU9 1444 aa17.28■□□□□ 0.36
CHMP2A-202ENST00000596708 AFAP1Q8N556 730 aa17.27■□□□□ 0.36
CHMP2A-202ENST00000596708 ZNF518AQ6AHZ1 1483 aa17.26■□□□□ 0.35
CHMP2A-202ENST00000596708 SETD1BQ9UPS6 1966 aaKnown RBP17.26■□□□□ 0.35
CHMP2A-202ENST00000596708 ARHGEF12Q9NZN5 1544 aa17.23■□□□□ 0.35
CHMP2A-202ENST00000596708 CCDC18Q5T9S5 1454 aa17.23■□□□□ 0.35
CHMP2A-202ENST00000596708 PREX2Q70Z35 1606 aa17.22■□□□□ 0.35
CHMP2A-202ENST00000596708 KDM5CP41229 1560 aa17.22■□□□□ 0.35
CHMP2A-202ENST00000596708 CASKIN1Q8WXD9 1431 aa17.21■□□□□ 0.35
CHMP2A-202ENST00000596708 CDC42BPAQ5VT25 1732 aa17.21■□□□□ 0.35
CHMP2A-202ENST00000596708 PREX1Q8TCU6 1659 aa17.21■□□□□ 0.35
CHMP2A-202ENST00000596708 CEBPAP49715 358 aaPredicted RBP17.21■□□□□ 0.35
CHMP2A-202ENST00000596708 ITSN2Q9NZM3 1697 aa17.2■□□□□ 0.34
CHMP2A-202ENST00000596708 DIP2CQ9Y2E4 1556 aa17.19■□□□□ 0.34
CHMP2A-202ENST00000596708 ABCA6Q8N139 1617 aa17.18■□□□□ 0.34
CHMP2A-202ENST00000596708 TRAPPC8Q9Y2L5 1435 aa17.16■□□□□ 0.34
CHMP2A-202ENST00000596708 MLH3Q9UHC1 1453 aa17.16■□□□□ 0.34
CHMP2A-202ENST00000596708 ABCC1P33527 1531 aa17.16■□□□□ 0.34
CHMP2A-202ENST00000596708 ESF1Q9H501 851 aaKnown RBP17.15■□□□□ 0.34
CHMP2A-202ENST00000596708 ZNF777Q9ULD5 760 aaPredicted RBP17.15■□□□□ 0.34
CHMP2A-202ENST00000596708 REREQ9P2R6 1566 aa17.15■□□□□ 0.34
CHMP2A-202ENST00000596708 FYCO1Q9BQS8 1478 aa17.14■□□□□ 0.33
CHMP2A-202ENST00000596708 KIDINS220Q9ULH0 1771 aa17.14■□□□□ 0.33
CHMP2A-202ENST00000596708 C3P01024 1663 aa17.13■□□□□ 0.33
CHMP2A-202ENST00000596708 STRCQ7RTU9 1775 aa17.1■□□□□ 0.33
CHMP2A-202ENST00000596708 CERKQ8TCT0 537 aa17.1■□□□□ 0.33
CHMP2A-202ENST00000596708 UHRF1BP1Q6BDS2 1440 aa17.1■□□□□ 0.33
CHMP2A-202ENST00000596708 AGLP35573 1532 aa17.09■□□□□ 0.33
CHMP2A-202ENST00000596708 SUPT6HQ7KZ85 1726 aaKnown RBP17.09■□□□□ 0.33
CHMP2A-202ENST00000596708 SAMD9LQ8IVG5 1584 aa17.08■□□□□ 0.32
CHMP2A-202ENST00000596708 HNRNPMP52272 730 aaKnown RBP eCLIP17.07■□□□□ 0.32
CHMP2A-202ENST00000596708 DMRT2Q9Y5R5 561 aa17.07■□□□□ 0.32
CHMP2A-202ENST00000596708 SYCP2Q9BX26 1530 aa17.06■□□□□ 0.32
CHMP2A-202ENST00000596708 GPATCH8Q9UKJ3 1502 aaKnown RBP17.06■□□□□ 0.32
CHMP2A-202ENST00000596708 SPAG9O60271 1321 aaKnown RBP17.05■□□□□ 0.32
CHMP2A-202ENST00000596708 CFDP1Q9UEE9 299 aaPredicted RBP17.05■□□□□ 0.32
CHMP2A-202ENST00000596708 MTUS2Q5JR59 1369 aa17.03■□□□□ 0.32
CHMP2A-202ENST00000596708 CCNB3Q8WWL7 1395 aa17.03■□□□□ 0.32
CHMP2A-202ENST00000596708 CNTLNQ9NXG0 1405 aa17.03■□□□□ 0.32
CHMP2A-202ENST00000596708 MROH2AA6NES4 1674 aa17.01■□□□□ 0.31
CHMP2A-202ENST00000596708 PLEKHH2Q8IVE3 1493 aa17■□□□□ 0.31
CHMP2A-202ENST00000596708 ATP7AQ04656 1500 aa17■□□□□ 0.31
CHMP2A-202ENST00000596708 CLTCQ00610 1675 aaKnown RBP16.99■□□□□ 0.31
CHMP2A-202ENST00000596708 KIAA1107Q9UPP5 1409 aa16.98■□□□□ 0.31
CHMP2A-202ENST00000596708 ZMYM3Q14202 1370 aa16.97■□□□□ 0.31
CHMP2A-202ENST00000596708 INO80Q9ULG1 1556 aaPredicted RBP16.97■□□□□ 0.31
CHMP2A-202ENST00000596708 GGT6Q6P531 493 aa16.96■□□□□ 0.31
CHMP2A-202ENST00000596708 A2MP01023 1474 aa16.96■□□□□ 0.31
CHMP2A-202ENST00000596708 ADGBQ8N7X0 1667 aa16.96■□□□□ 0.31
CHMP2A-202ENST00000596708 PTPRTO14522 1441 aa16.96■□□□□ 0.3
CHMP2A-202ENST00000596708 TIAM1Q13009 1591 aa16.94■□□□□ 0.3
CHMP2A-202ENST00000596708 EHBP1L1Q8N3D4 1523 aa16.94■□□□□ 0.3
CHMP2A-202ENST00000596708 ZNF644Q9H582 1327 aaPredicted RBP16.94■□□□□ 0.3
CHMP2A-202ENST00000596708 NPATQ14207 1427 aa16.93■□□□□ 0.3
CHMP2A-202ENST00000596708 PLXNC1O60486 1568 aa16.93■□□□□ 0.3
CHMP2A-202ENST00000596708 CAMSAP1Q5T5Y3 1602 aa16.92■□□□□ 0.3
CHMP2A-202ENST00000596708 NCOA1Q15788 1441 aa16.9■□□□□ 0.3
CHMP2A-202ENST00000596708 CEP162Q5TB80 1403 aa16.9■□□□□ 0.3
CHMP2A-202ENST00000596708 MYO3AQ8NEV4 1616 aa16.88■□□□□ 0.29
CHMP2A-202ENST00000596708 MBD5Q9P267 1494 aa16.87■□□□□ 0.29
CHMP2A-202ENST00000596708 PPP6R1Q9UPN7 881 aa16.87■□□□□ 0.29
CHMP2A-202ENST00000596708 NCKAP5LQ9HCH0 1330 aa16.87■□□□□ 0.29
CHMP2A-202ENST00000596708 ZNF142P52746 1687 aaPredicted RBP16.87■□□□□ 0.29
CHMP2A-202ENST00000596708 RTEL1-TNFRSF6BF6WH68 1400 aa16.86■□□□□ 0.29
CHMP2A-202ENST00000596708 LTBP4Q8N2S1 1624 aa16.85■□□□□ 0.29
CHMP2A-202ENST00000596708 PTPRKQ15262 1439 aa16.85■□□□□ 0.29
CHMP2A-202ENST00000596708 DHX29Q7Z478 1369 aaKnown RBP16.84■□□□□ 0.29
CHMP2A-202ENST00000596708 NCOA2Q15596 1464 aa16.84■□□□□ 0.29
CHMP2A-202ENST00000596708 CEP170BQ9Y4F5 1589 aaPredicted RBP16.84■□□□□ 0.29
CHMP2A-202ENST00000596708 KIF3BO15066 747 aa16.83■□□□□ 0.28
CHMP2A-202ENST00000596708 CAMSAP2Q08AD1 1489 aa16.82■□□□□ 0.28
CHMP2A-202ENST00000596708 PKD2Q13563 968 aa16.82■□□□□ 0.28
CHMP2A-202ENST00000596708 RSPH4AQ5TD94 716 aa16.82■□□□□ 0.28
CHMP2A-202ENST00000596708 CCDC141Q6ZP82 1450 aa16.81■□□□□ 0.28
CHMP2A-202ENST00000596708 PLA2R1Q13018 1463 aa16.8■□□□□ 0.28
CHMP2A-202ENST00000596708 IQSEC2Q5JU85 1478 aa16.8■□□□□ 0.28
CHMP2A-202ENST00000596708 CFAP65Q6ZU64 1925 aaKnown RBP16.79■□□□□ 0.28
CHMP2A-202ENST00000596708 TSPY4P0CV99 314 aa16.79■□□□□ 0.28
CHMP2A-202ENST00000596708 TSPY10P0CW01 314 aa16.79■□□□□ 0.28
CHMP2A-202ENST00000596708 DISP3Q9P2K9 1392 aa16.78■□□□□ 0.28
CHMP2A-202ENST00000596708 ZNF335Q9H4Z2 1342 aaPredicted RBP16.78■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms