RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 APLP2Q06481 763 aa17.46■□□□□ 0.39
LIG1-211ENST00000596457 PLCH2O75038 1416 aa17.46■□□□□ 0.39
LIG1-211ENST00000596457 TIAM1Q13009 1591 aa17.45■□□□□ 0.38
LIG1-211ENST00000596457 AKNAQ7Z591 1439 aa17.45■□□□□ 0.38
LIG1-211ENST00000596457 ARHGAP5Q13017 1502 aa17.44■□□□□ 0.38
LIG1-211ENST00000596457 CDC42BPBQ9Y5S2 1711 aa17.44■□□□□ 0.38
LIG1-211ENST00000596457 EHBP1L1Q8N3D4 1523 aa17.43■□□□□ 0.38
LIG1-211ENST00000596457 RAPGEF3O95398 923 aa17.43■□□□□ 0.38
LIG1-211ENST00000596457 EFCAB2Q5VUJ9 269 aa17.43■□□□□ 0.38
LIG1-211ENST00000596457 CDC42BPAQ5VT25 1732 aa17.43■□□□□ 0.38
LIG1-211ENST00000596457 ZNF777Q9ULD5 760 aaPredicted RBP17.41■□□□□ 0.38
LIG1-211ENST00000596457 PREX2Q70Z35 1606 aa17.4■□□□□ 0.38
LIG1-211ENST00000596457 CCNB3Q8WWL7 1395 aa17.4■□□□□ 0.38
LIG1-211ENST00000596457 KANK4Q5T7N3 995 aaPredicted RBP17.39■□□□□ 0.37
LIG1-211ENST00000596457 SUPT6HQ7KZ85 1726 aaKnown RBP17.38■□□□□ 0.37
LIG1-211ENST00000596457 SCAPERQ9BY12 1400 aa17.38■□□□□ 0.37
LIG1-211ENST00000596457 DENND4BO75064 1496 aaPredicted RBP17.37■□□□□ 0.37
LIG1-211ENST00000596457 LRRC9Q6ZRR7 1453 aa17.37■□□□□ 0.37
LIG1-211ENST00000596457 GPATCH8Q9UKJ3 1502 aaKnown RBP17.36■□□□□ 0.37
LIG1-211ENST00000596457 CFDP1Q9UEE9 299 aaPredicted RBP17.35■□□□□ 0.37
LIG1-211ENST00000596457 RICTORQ6R327 1708 aa17.35■□□□□ 0.37
LIG1-211ENST00000596457 MAP3K1Q13233 1512 aa17.34■□□□□ 0.37
LIG1-211ENST00000596457 FRMPD1Q5SYB0 1578 aa17.34■□□□□ 0.37
LIG1-211ENST00000596457 MYT1LQ9UL68 1186 aa17.34■□□□□ 0.37
LIG1-211ENST00000596457 ITSN2Q9NZM3 1697 aa17.33■□□□□ 0.37
LIG1-211ENST00000596457 NCOA2Q15596 1464 aa17.33■□□□□ 0.37
LIG1-211ENST00000596457 SAMD9LQ8IVG5 1584 aa17.3■□□□□ 0.36
LIG1-211ENST00000596457 HNRNPMP52272 730 aaKnown RBP eCLIP17.29■□□□□ 0.36
LIG1-211ENST00000596457 AFAP1Q8N556 730 aa17.29■□□□□ 0.36
LIG1-211ENST00000596457 MAGI2Q86UL8 1455 aa17.29■□□□□ 0.36
LIG1-211ENST00000596457 POGZQ7Z3K3 1410 aa17.29■□□□□ 0.36
LIG1-211ENST00000596457 ABCC1P33527 1531 aa17.27■□□□□ 0.36
LIG1-211ENST00000596457 ZMYM4Q5VZL5 1548 aa17.26■□□□□ 0.35
LIG1-211ENST00000596457 ARHGEF12Q9NZN5 1544 aa17.26■□□□□ 0.35
LIG1-211ENST00000596457 ZNF644Q9H582 1327 aaPredicted RBP17.26■□□□□ 0.35
LIG1-211ENST00000596457 PPARGC1BQ86YN6 1023 aaKnown RBP17.26■□□□□ 0.35
LIG1-211ENST00000596457 SPATA31D1Q6ZQQ2 1576 aa17.26■□□□□ 0.35
LIG1-211ENST00000596457 SYCP2Q9BX26 1530 aa17.26■□□□□ 0.35
LIG1-211ENST00000596457 TRAPPC8Q9Y2L5 1435 aa17.25■□□□□ 0.35
LIG1-211ENST00000596457 ZNF518AQ6AHZ1 1483 aa17.24■□□□□ 0.35
LIG1-211ENST00000596457 ARHGEF40Q8TER5 1519 aa17.24■□□□□ 0.35
LIG1-211ENST00000596457 ARID4BQ4LE39 1312 aaPredicted RBP17.23■□□□□ 0.35
LIG1-211ENST00000596457 ZFYVE16Q7Z3T8 1539 aa17.23■□□□□ 0.35
LIG1-211ENST00000596457 ADAMTSL3P82987 1691 aa17.23■□□□□ 0.35
LIG1-211ENST00000596457 YEATS2Q9ULM3 1422 aa17.22■□□□□ 0.35
LIG1-211ENST00000596457 BCORL1Q5H9F3 1711 aa17.21■□□□□ 0.35
LIG1-211ENST00000596457 PLEKHH2Q8IVE3 1493 aa17.21■□□□□ 0.35
LIG1-211ENST00000596457 MYOM3Q5VTT5 1437 aa17.2■□□□□ 0.34
LIG1-211ENST00000596457 CAMSAP2Q08AD1 1489 aa17.19■□□□□ 0.34
LIG1-211ENST00000596457 KDM5CP41229 1560 aa17.19■□□□□ 0.34
LIG1-211ENST00000596457 KIAA1107Q9UPP5 1409 aa17.18■□□□□ 0.34
LIG1-211ENST00000596457 SPAG9O60271 1321 aaKnown RBP17.18■□□□□ 0.34
LIG1-211ENST00000596457 CERKQ8TCT0 537 aa17.17■□□□□ 0.34
LIG1-211ENST00000596457 KIDINS220Q9ULH0 1771 aa17.15■□□□□ 0.34
LIG1-211ENST00000596457 MLECQ14165 292 aa17.15■□□□□ 0.34
LIG1-211ENST00000596457 ATP10AO60312 1499 aa17.15■□□□□ 0.34
LIG1-211ENST00000596457 PTPRMP28827 1452 aa17.15■□□□□ 0.34
LIG1-211ENST00000596457 ABCA6Q8N139 1617 aa17.14■□□□□ 0.33
LIG1-211ENST00000596457 MLH3Q9UHC1 1453 aa17.14■□□□□ 0.33
LIG1-211ENST00000596457 SIGLEC1Q9BZZ2 1709 aa17.13■□□□□ 0.33
LIG1-211ENST00000596457 MBD5Q9P267 1494 aa17.13■□□□□ 0.33
LIG1-211ENST00000596457 DIP2CQ9Y2E4 1556 aa17.13■□□□□ 0.33
LIG1-211ENST00000596457 PTPN23Q9H3S7 1636 aa17.13■□□□□ 0.33
LIG1-211ENST00000596457 MIA2Q96PC5 1412 aa17.13■□□□□ 0.33
LIG1-211ENST00000596457 C9orf84Q5VXU9 1444 aa17.12■□□□□ 0.33
LIG1-211ENST00000596457 ATP7AQ04656 1500 aa17.11■□□□□ 0.33
LIG1-211ENST00000596457 MADDQ8WXG6 1647 aa17.11■□□□□ 0.33
LIG1-211ENST00000596457 TSPY4P0CV99 314 aa17.1■□□□□ 0.33
LIG1-211ENST00000596457 TSPY10P0CW01 314 aa17.1■□□□□ 0.33
LIG1-211ENST00000596457 FGD6Q6ZV73 1430 aa17.1■□□□□ 0.33
LIG1-211ENST00000596457 CCDC141Q6ZP82 1450 aa17.1■□□□□ 0.33
LIG1-211ENST00000596457 FAM50AQ14320 339 aaKnown RBP17.09■□□□□ 0.33
LIG1-211ENST00000596457 RSPH4AQ5TD94 716 aa17.09■□□□□ 0.33
LIG1-211ENST00000596457 INO80Q9ULG1 1556 aaPredicted RBP17.09■□□□□ 0.33
LIG1-211ENST00000596457 ARHGEF5Q12774 1597 aa17.08■□□□□ 0.32
LIG1-211ENST00000596457 PLPPR3Q6T4P5 718 aa17.07■□□□□ 0.32
LIG1-211ENST00000596457 RIMS1Q86UR5 1692 aaKnown RBP17.07■□□□□ 0.32
LIG1-211ENST00000596457 REREQ9P2R6 1566 aa17.06■□□□□ 0.32
LIG1-211ENST00000596457 ADGBQ8N7X0 1667 aa17.04■□□□□ 0.32
LIG1-211ENST00000596457 RTEL1-TNFRSF6BF6WH68 1400 aa17.04■□□□□ 0.32
LIG1-211ENST00000596457 FER1L4A9Z1Z3 1794 aa17.03■□□□□ 0.32
LIG1-211ENST00000596457 TCOF1Q13428 1488 aaKnown RBP17.03■□□□□ 0.32
LIG1-211ENST00000596457 A2MP01023 1474 aa17.02■□□□□ 0.32
LIG1-211ENST00000596457 CHIC2Q9UKJ5 165 aa17.02■□□□□ 0.32
LIG1-211ENST00000596457 CROCC2H7BZ55 1655 aa17.01■□□□□ 0.31
LIG1-211ENST00000596457 HSPA2P54652 639 aa17.01■□□□□ 0.31
LIG1-211ENST00000596457 AGLP35573 1532 aa17.01■□□□□ 0.31
LIG1-211ENST00000596457 DNMT1P26358 1616 aaKnown RBP17■□□□□ 0.31
LIG1-211ENST00000596457 DAPK1P53355 1430 aa17■□□□□ 0.31
LIG1-211ENST00000596457 ABCC5O15440 1437 aa16.99■□□□□ 0.31
LIG1-211ENST00000596457 ESF1Q9H501 851 aaKnown RBP16.99■□□□□ 0.31
LIG1-211ENST00000596457 MAST1Q9Y2H9 1570 aa16.98■□□□□ 0.31
LIG1-211ENST00000596457 ITGAEP38570 1179 aa16.98■□□□□ 0.31
LIG1-211ENST00000596457 GGT6Q6P531 493 aa16.98■□□□□ 0.31
LIG1-211ENST00000596457 SETD1BQ9UPS6 1966 aaKnown RBP16.97■□□□□ 0.31
LIG1-211ENST00000596457 RRP7BPQ9NSQ0 103 aa16.96■□□□□ 0.31
LIG1-211ENST00000596457 DHX29Q7Z478 1369 aaKnown RBP16.96■□□□□ 0.31
LIG1-211ENST00000596457 PLXNC1O60486 1568 aa16.95■□□□□ 0.3
LIG1-211ENST00000596457 KIF3BO15066 747 aa16.95■□□□□ 0.3
LIG1-211ENST00000596457 SHANK2Q9UPX8 1470 aa16.93■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms