RNA–Protein interactions for RNA: ENST00000595974.5

TRIM28-206, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 665 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-206ENST00000595974 ZMYM4Q5VZL5 1548 aa25.91■■□□□ 1.74
TRIM28-206ENST00000595974 EFCAB2Q5VUJ9 269 aa25.9■■□□□ 1.74
TRIM28-206ENST00000595974 VPS8Q8N3P4 1428 aa25.88■■□□□ 1.73
TRIM28-206ENST00000595974 ARHGEF40Q8TER5 1519 aa25.88■■□□□ 1.73
TRIM28-206ENST00000595974 KDM4FA0A1W2PPD8 638 aa25.88■■□□□ 1.73
TRIM28-206ENST00000595974 EHBP1L1Q8N3D4 1523 aa25.88■■□□□ 1.73
TRIM28-206ENST00000595974 MTUS2Q5JR59 1369 aa25.87■■□□□ 1.73
TRIM28-206ENST00000595974 POGZQ7Z3K3 1410 aa25.87■■□□□ 1.73
TRIM28-206ENST00000595974 SCAPERQ9BY12 1400 aa25.87■■□□□ 1.73
TRIM28-206ENST00000595974 MAGI2Q86UL8 1455 aa25.82■■□□□ 1.72
TRIM28-206ENST00000595974 TIAM1Q13009 1591 aa25.81■■□□□ 1.72
TRIM28-206ENST00000595974 ZNF518AQ6AHZ1 1483 aa25.8■■□□□ 1.72
TRIM28-206ENST00000595974 ABCC1P33527 1531 aa25.8■■□□□ 1.72
TRIM28-206ENST00000595974 ZFYVE16Q7Z3T8 1539 aa25.8■■□□□ 1.72
TRIM28-206ENST00000595974 ITSN2Q9NZM3 1697 aa25.79■■□□□ 1.72
TRIM28-206ENST00000595974 KDM5CP41229 1560 aa25.78■■□□□ 1.72
TRIM28-206ENST00000595974 GPATCH8Q9UKJ3 1502 aaKnown RBP25.78■■□□□ 1.72
TRIM28-206ENST00000595974 SUPT6HQ7KZ85 1726 aaKnown RBP25.75■■□□□ 1.71
TRIM28-206ENST00000595974 CCNB3Q8WWL7 1395 aa25.74■■□□□ 1.71
TRIM28-206ENST00000595974 SAMD9LQ8IVG5 1584 aa25.73■■□□□ 1.71
TRIM28-206ENST00000595974 HECW2Q9P2P5 1572 aa25.73■■□□□ 1.71
TRIM28-206ENST00000595974 MAP3K1Q13233 1512 aa25.73■■□□□ 1.71
TRIM28-206ENST00000595974 YEATS2Q9ULM3 1422 aa25.72■■□□□ 1.71
TRIM28-206ENST00000595974 BCORL1Q5H9F3 1711 aa25.71■■□□□ 1.71
TRIM28-206ENST00000595974 ARHGEF12Q9NZN5 1544 aa25.69■■□□□ 1.7
TRIM28-206ENST00000595974 ADAMTSL3P82987 1691 aa25.69■■□□□ 1.7
TRIM28-206ENST00000595974 SYCP2Q9BX26 1530 aa25.68■■□□□ 1.7
TRIM28-206ENST00000595974 PLEKHH2Q8IVE3 1493 aa25.67■■□□□ 1.7
TRIM28-206ENST00000595974 LRRC9Q6ZRR7 1453 aa25.66■■□□□ 1.7
TRIM28-206ENST00000595974 TRAPPC8Q9Y2L5 1435 aa25.66■■□□□ 1.7
TRIM28-206ENST00000595974 NCOA2Q15596 1464 aa25.66■■□□□ 1.7
TRIM28-206ENST00000595974 SIGLEC1Q9BZZ2 1709 aa25.66■■□□□ 1.7
TRIM28-206ENST00000595974 CFDP1Q9UEE9 299 aaPredicted RBP25.65■■□□□ 1.7
TRIM28-206ENST00000595974 MLH3Q9UHC1 1453 aa25.65■■□□□ 1.7
TRIM28-206ENST00000595974 AFAP1Q8N556 730 aa25.64■■□□□ 1.7
TRIM28-206ENST00000595974 ATP10AO60312 1499 aa25.64■■□□□ 1.69
TRIM28-206ENST00000595974 C9orf84Q5VXU9 1444 aa25.63■■□□□ 1.69
TRIM28-206ENST00000595974 ZNF777Q9ULD5 760 aaPredicted RBP25.63■■□□□ 1.69
TRIM28-206ENST00000595974 DIP2CQ9Y2E4 1556 aa25.63■■□□□ 1.69
TRIM28-206ENST00000595974 KIAA1107Q9UPP5 1409 aa25.63■■□□□ 1.69
TRIM28-206ENST00000595974 ARID4BQ4LE39 1312 aaPredicted RBP25.63■■□□□ 1.69
TRIM28-206ENST00000595974 ABCA6Q8N139 1617 aa25.62■■□□□ 1.69
TRIM28-206ENST00000595974 KIDINS220Q9ULH0 1771 aa25.6■■□□□ 1.69
TRIM28-206ENST00000595974 REREQ9P2R6 1566 aa25.6■■□□□ 1.69
TRIM28-206ENST00000595974 MADDQ8WXG6 1647 aa25.59■■□□□ 1.69
TRIM28-206ENST00000595974 INO80Q9ULG1 1556 aaPredicted RBP25.54■■□□□ 1.68
TRIM28-206ENST00000595974 MYT1LQ9UL68 1186 aa25.54■■□□□ 1.68
TRIM28-206ENST00000595974 RIMS1Q86UR5 1692 aaKnown RBP25.53■■□□□ 1.68
TRIM28-206ENST00000595974 FER1L4A9Z1Z3 1794 aa25.52■■□□□ 1.68
TRIM28-206ENST00000595974 HNRNPMP52272 730 aaKnown RBP eCLIP25.52■■□□□ 1.68
TRIM28-206ENST00000595974 PTPRMP28827 1452 aa25.52■■□□□ 1.68
TRIM28-206ENST00000595974 ATP7AQ04656 1500 aa25.52■■□□□ 1.68
TRIM28-206ENST00000595974 APLP2Q06481 763 aa25.51■■□□□ 1.67
TRIM28-206ENST00000595974 KANK4Q5T7N3 995 aaPredicted RBP25.51■■□□□ 1.67
TRIM28-206ENST00000595974 CAMSAP2Q08AD1 1489 aa25.51■■□□□ 1.67
TRIM28-206ENST00000595974 MBD5Q9P267 1494 aa25.49■■□□□ 1.67
TRIM28-206ENST00000595974 SPAG9O60271 1321 aaKnown RBP25.49■■□□□ 1.67
TRIM28-206ENST00000595974 AGLP35573 1532 aa25.48■■□□□ 1.67
TRIM28-206ENST00000595974 ZNF644Q9H582 1327 aaPredicted RBP25.48■■□□□ 1.67
TRIM28-206ENST00000595974 MYOM3Q5VTT5 1437 aa25.45■■□□□ 1.66
TRIM28-206ENST00000595974 CCDC141Q6ZP82 1450 aa25.44■■□□□ 1.66
TRIM28-206ENST00000595974 ARHGEF5Q12774 1597 aa25.44■■□□□ 1.66
TRIM28-206ENST00000595974 ADGBQ8N7X0 1667 aa25.43■■□□□ 1.66
TRIM28-206ENST00000595974 MIA2Q96PC5 1412 aa25.42■■□□□ 1.66
TRIM28-206ENST00000595974 PLXNC1O60486 1568 aa25.41■■□□□ 1.66
TRIM28-206ENST00000595974 MLECQ14165 292 aa25.41■■□□□ 1.66
TRIM28-206ENST00000595974 RTEL1-TNFRSF6BF6WH68 1400 aa25.4■■□□□ 1.66
TRIM28-206ENST00000595974 RSPH4AQ5TD94 716 aa25.38■■□□□ 1.65
TRIM28-206ENST00000595974 A2MP01023 1474 aa25.37■■□□□ 1.65
TRIM28-206ENST00000595974 MAST1Q9Y2H9 1570 aa25.31■■□□□ 1.64
TRIM28-206ENST00000595974 PTPN23Q9H3S7 1636 aa25.31■■□□□ 1.64
TRIM28-206ENST00000595974 FGD6Q6ZV73 1430 aa25.28■■□□□ 1.64
TRIM28-206ENST00000595974 CROCC2H7BZ55 1655 aa25.27■■□□□ 1.64
TRIM28-206ENST00000595974 MROH2AA6NES4 1674 aa25.26■■□□□ 1.63
TRIM28-206ENST00000595974 CNTLNQ9NXG0 1405 aa25.26■■□□□ 1.63
TRIM28-206ENST00000595974 TSPY4P0CV99 314 aa25.25■■□□□ 1.63
TRIM28-206ENST00000595974 TSPY10P0CW01 314 aa25.25■■□□□ 1.63
TRIM28-206ENST00000595974 TCOF1Q13428 1488 aaKnown RBP25.25■■□□□ 1.63
TRIM28-206ENST00000595974 C3P01024 1663 aa25.25■■□□□ 1.63
TRIM28-206ENST00000595974 DHX29Q7Z478 1369 aaKnown RBP25.23■■□□□ 1.63
TRIM28-206ENST00000595974 LMTK3Q96Q04 1460 aa25.22■■□□□ 1.63
TRIM28-206ENST00000595974 ESF1Q9H501 851 aaKnown RBP25.22■■□□□ 1.63
TRIM28-206ENST00000595974 SETD1BQ9UPS6 1966 aaKnown RBP25.22■■□□□ 1.63
TRIM28-206ENST00000595974 SHANK2Q9UPX8 1470 aa25.21■■□□□ 1.63
TRIM28-206ENST00000595974 PREX1Q8TCU6 1659 aa25.21■■□□□ 1.63
TRIM28-206ENST00000595974 DNMT1P26358 1616 aaKnown RBP25.21■■□□□ 1.63
TRIM28-206ENST00000595974 PLPPR3Q6T4P5 718 aa25.2■■□□□ 1.62
TRIM28-206ENST00000595974 CLTCQ00610 1675 aaKnown RBP25.19■■□□□ 1.62
TRIM28-206ENST00000595974 FAM135AQ9P2D6 1515 aa25.16■■□□□ 1.62
TRIM28-206ENST00000595974 EIF2AK4Q9P2K8 1649 aaKnown RBP25.15■■□□□ 1.62
TRIM28-206ENST00000595974 ABCC5O15440 1437 aa25.15■■□□□ 1.62
TRIM28-206ENST00000595974 DAPK1P53355 1430 aa25.15■■□□□ 1.62
TRIM28-206ENST00000595974 CEBPAP49715 358 aaPredicted RBP25.14■■□□□ 1.62
TRIM28-206ENST00000595974 PPP6R1Q9UPN7 881 aa25.13■■□□□ 1.61
TRIM28-206ENST00000595974 GGT6Q6P531 493 aa25.12■■□□□ 1.61
TRIM28-206ENST00000595974 RNF17Q9BXT8 1623 aaKnown RBP25.12■■□□□ 1.61
TRIM28-206ENST00000595974 DUOX2Q9NRD8 1548 aa25.11■■□□□ 1.61
TRIM28-206ENST00000595974 KDM5DQ9BY66 1539 aa25.09■■□□□ 1.61
TRIM28-206ENST00000595974 KIF3BO15066 747 aa25.09■■□□□ 1.61
TRIM28-206ENST00000595974 NPATQ14207 1427 aa25.08■■□□□ 1.61
Retrieved 100 of 20,778 RNA–protein pairs in 6.6 ms