RNA–Protein interactions for RNA: ENST00000594828.7

LSM4-204, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 807 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-204ENST00000594828 POGZQ7Z3K3 1410 aa37.85■■■■□ 3.65
LSM4-204ENST00000594828 ARHGAP5Q13017 1502 aa37.84■■■■□ 3.65
LSM4-204ENST00000594828 MAGI2Q86UL8 1455 aa37.83■■■■□ 3.65
LSM4-204ENST00000594828 ZFYVE16Q7Z3T8 1539 aa37.8■■■■□ 3.64
LSM4-204ENST00000594828 YEATS2Q9ULM3 1422 aa37.79■■■■□ 3.64
LSM4-204ENST00000594828 ADAMTSL3P82987 1691 aa37.79■■■■□ 3.64
LSM4-204ENST00000594828 BCORL1Q5H9F3 1711 aa37.75■■■■□ 3.63
LSM4-204ENST00000594828 CDC42BPBQ9Y5S2 1711 aa37.73■■■■□ 3.63
LSM4-204ENST00000594828 CEP162Q5TB80 1403 aa37.72■■■■□ 3.63
LSM4-204ENST00000594828 PTPRMP28827 1452 aa37.71■■■■□ 3.63
LSM4-204ENST00000594828 AFAP1Q8N556 730 aa37.7■■■■□ 3.63
LSM4-204ENST00000594828 ZNF518AQ6AHZ1 1483 aa37.7■■■■□ 3.63
LSM4-204ENST00000594828 PREX2Q70Z35 1606 aa37.68■■■■□ 3.62
LSM4-204ENST00000594828 HECW2Q9P2P5 1572 aa37.67■■■■□ 3.62
LSM4-204ENST00000594828 MADDQ8WXG6 1647 aa37.65■■■■□ 3.62
LSM4-204ENST00000594828 ATP10AO60312 1499 aa37.64■■■■□ 3.62
LSM4-204ENST00000594828 LOC105371045A0A1W2PR82 267 aa37.62■■■■□ 3.61
LSM4-204ENST00000594828 MYT1LQ9UL68 1186 aa37.62■■■■□ 3.61
LSM4-204ENST00000594828 CDC42BPAQ5VT25 1732 aa37.6■■■■□ 3.61
LSM4-204ENST00000594828 KDM5CP41229 1560 aa37.59■■■■□ 3.61
LSM4-204ENST00000594828 SIGLEC1Q9BZZ2 1709 aa37.59■■■■□ 3.61
LSM4-204ENST00000594828 MTUS2Q5JR59 1369 aa37.59■■■■□ 3.61
LSM4-204ENST00000594828 MLECQ14165 292 aa37.58■■■■□ 3.61
LSM4-204ENST00000594828 C9orf84Q5VXU9 1444 aa37.57■■■■□ 3.6
LSM4-204ENST00000594828 ZNF777Q9ULD5 760 aaPredicted RBP37.56■■■■□ 3.6
LSM4-204ENST00000594828 ABCC1P33527 1531 aa37.56■■■■□ 3.6
LSM4-204ENST00000594828 ARHGEF12Q9NZN5 1544 aa37.56■■■■□ 3.6
LSM4-204ENST00000594828 GPATCH8Q9UKJ3 1502 aaKnown RBP37.56■■■■□ 3.6
LSM4-204ENST00000594828 TRAPPC8Q9Y2L5 1435 aa37.54■■■■□ 3.6
LSM4-204ENST00000594828 RIMS1Q86UR5 1692 aaKnown RBP37.52■■■■□ 3.6
LSM4-204ENST00000594828 CCNB3Q8WWL7 1395 aa37.5■■■■□ 3.59
LSM4-204ENST00000594828 MLH3Q9UHC1 1453 aa37.5■■■■□ 3.59
LSM4-204ENST00000594828 ITSN2Q9NZM3 1697 aa37.49■■■■□ 3.59
LSM4-204ENST00000594828 CFDP1Q9UEE9 299 aaPredicted RBP37.48■■■■□ 3.59
LSM4-204ENST00000594828 PLPPR3Q6T4P5 718 aa37.44■■■■□ 3.58
LSM4-204ENST00000594828 SAMD9LQ8IVG5 1584 aa37.43■■■■□ 3.58
LSM4-204ENST00000594828 DIP2CQ9Y2E4 1556 aa37.42■■■■□ 3.58
LSM4-204ENST00000594828 HNRNPMP52272 730 aaKnown RBP eCLIP37.42■■■■□ 3.58
LSM4-204ENST00000594828 EHBP1L1Q8N3D4 1523 aa37.41■■■■□ 3.58
LSM4-204ENST00000594828 ABCA6Q8N139 1617 aa37.37■■■■□ 3.57
LSM4-204ENST00000594828 FER1L4A9Z1Z3 1794 aa37.37■■■■□ 3.57
LSM4-204ENST00000594828 SYCP2Q9BX26 1530 aa37.36■■■■□ 3.57
LSM4-204ENST00000594828 REREQ9P2R6 1566 aa37.36■■■■□ 3.57
LSM4-204ENST00000594828 KIAA1107Q9UPP5 1409 aa37.36■■■■□ 3.57
LSM4-204ENST00000594828 PLEKHH2Q8IVE3 1493 aa37.35■■■■□ 3.57
LSM4-204ENST00000594828 SPAG9O60271 1321 aaKnown RBP37.33■■■■□ 3.57
LSM4-204ENST00000594828 KIDINS220Q9ULH0 1771 aa37.32■■■■□ 3.57
LSM4-204ENST00000594828 VPS8Q8N3P4 1428 aa37.31■■■■□ 3.56
LSM4-204ENST00000594828 TIAM1Q13009 1591 aa37.3■■■■□ 3.56
LSM4-204ENST00000594828 LMTK3Q96Q04 1460 aa37.27■■■■□ 3.56
LSM4-204ENST00000594828 AGLP35573 1532 aa37.26■■■■□ 3.56
LSM4-204ENST00000594828 ZNF644Q9H582 1327 aaPredicted RBP37.26■■■■□ 3.56
LSM4-204ENST00000594828 CEBPAP49715 358 aaPredicted RBP37.22■■■■□ 3.55
LSM4-204ENST00000594828 NCOA2Q15596 1464 aa37.21■■■■□ 3.55
LSM4-204ENST00000594828 SUPT6HQ7KZ85 1726 aaKnown RBP37.2■■■■□ 3.55
LSM4-204ENST00000594828 ESF1Q9H501 851 aaKnown RBP37.19■■■■□ 3.54
LSM4-204ENST00000594828 ATP7AQ04656 1500 aa37.18■■■■□ 3.54
LSM4-204ENST00000594828 HSPA2P54652 639 aa37.15■■■■□ 3.54
LSM4-204ENST00000594828 MBD5Q9P267 1494 aa37.14■■■■□ 3.54
LSM4-204ENST00000594828 LRRC9Q6ZRR7 1453 aa37.13■■■■□ 3.53
LSM4-204ENST00000594828 INO80Q9ULG1 1556 aaPredicted RBP37.12■■■■□ 3.53
LSM4-204ENST00000594828 A2MP01023 1474 aa37.07■■■■□ 3.53
LSM4-204ENST00000594828 MAP3K1Q13233 1512 aa37.07■■■■□ 3.53
LSM4-204ENST00000594828 KANK4Q5T7N3 995 aaPredicted RBP37.06■■■■□ 3.52
LSM4-204ENST00000594828 RSPH4AQ5TD94 716 aa37.04■■■■□ 3.52
LSM4-204ENST00000594828 CNTLNQ9NXG0 1405 aa37.03■■■■□ 3.52
LSM4-204ENST00000594828 CAMSAP2Q08AD1 1489 aa37.03■■■■□ 3.52
LSM4-204ENST00000594828 RTEL1-TNFRSF6BF6WH68 1400 aa37.02■■■■□ 3.52
LSM4-204ENST00000594828 ILDR1Q86SU0 546 aaPredicted RBP37.02■■■■□ 3.52
LSM4-204ENST00000594828 PLXNC1O60486 1568 aa37■■■■□ 3.51
LSM4-204ENST00000594828 PREX1Q8TCU6 1659 aa36.99■■■■□ 3.51
LSM4-204ENST00000594828 C3P01024 1663 aa36.99■■■■□ 3.51
LSM4-204ENST00000594828 CCDC141Q6ZP82 1450 aa36.97■■■■□ 3.51
LSM4-204ENST00000594828 ADGBQ8N7X0 1667 aa36.96■■■■□ 3.51
LSM4-204ENST00000594828 APLP2Q06481 763 aa36.96■■■■□ 3.51
LSM4-204ENST00000594828 SETD1BQ9UPS6 1966 aaKnown RBP36.95■■■■□ 3.51
LSM4-204ENST00000594828 GGT6Q6P531 493 aa36.95■■■■□ 3.51
LSM4-204ENST00000594828 UHRF1BP1Q6BDS2 1440 aa36.94■■■■□ 3.5
LSM4-204ENST00000594828 ZMYM3Q14202 1370 aa36.91■■■■□ 3.5
LSM4-204ENST00000594828 DHX29Q7Z478 1369 aaKnown RBP36.91■■■■□ 3.5
LSM4-204ENST00000594828 TSPY4P0CV99 314 aa36.9■■■■□ 3.5
LSM4-204ENST00000594828 TSPY10P0CW01 314 aa36.9■■■■□ 3.5
LSM4-204ENST00000594828 PPP6R1Q9UPN7 881 aa36.88■■■■□ 3.49
LSM4-204ENST00000594828 ARHGEF5Q12774 1597 aa36.87■■■■□ 3.49
LSM4-204ENST00000594828 MROH2AA6NES4 1674 aa36.86■■■■□ 3.49
LSM4-204ENST00000594828 MYOM3Q5VTT5 1437 aa36.85■■■■□ 3.49
LSM4-204ENST00000594828 MIA2Q96PC5 1412 aa36.84■■■■□ 3.49
LSM4-204ENST00000594828 CLTCQ00610 1675 aaKnown RBP36.82■■■■□ 3.48
LSM4-204ENST00000594828 NPATQ14207 1427 aa36.8■■■■□ 3.48
LSM4-204ENST00000594828 KIF3BO15066 747 aa36.8■■■■□ 3.48
LSM4-204ENST00000594828 DMRT2Q9Y5R5 561 aa36.74■■■■□ 3.47
LSM4-204ENST00000594828 PTPRKQ15262 1439 aa36.68■■■■□ 3.46
LSM4-204ENST00000594828 STRCQ7RTU9 1775 aa36.68■■■■□ 3.46
LSM4-204ENST00000594828 FBXO41Q8TF61 875 aa36.68■■■■□ 3.46
LSM4-204ENST00000594828 MAST1Q9Y2H9 1570 aa36.68■■■■□ 3.46
LSM4-204ENST00000594828 WASHC2CQ9Y4E1 1318 aa36.63■■■■□ 3.45
LSM4-204ENST00000594828 PTPN23Q9H3S7 1636 aa36.59■■■■□ 3.45
LSM4-204ENST00000594828 KDM5DQ9BY66 1539 aa36.58■■■■□ 3.45
LSM4-204ENST00000594828 FAM135AQ9P2D6 1515 aa36.58■■■■□ 3.45
LSM4-204ENST00000594828 FGD6Q6ZV73 1430 aa36.56■■■■□ 3.44
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms