RNA–Protein interactions for RNA: ENST00000594504.5

UPF1-203, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 559 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-203ENST00000594504 KIF14Q15058 1648 aa20.45■□□□□ 0.86
UPF1-203ENST00000594504 EFCAB2Q5VUJ9 269 aa20.44■□□□□ 0.86
UPF1-203ENST00000594504 RIMS1Q86UR5 1692 aaKnown RBP20.44■□□□□ 0.86
UPF1-203ENST00000594504 ZMYM4Q5VZL5 1548 aa20.43■□□□□ 0.86
UPF1-203ENST00000594504 ZFYVE16Q7Z3T8 1539 aa20.43■□□□□ 0.86
UPF1-203ENST00000594504 MYO5CQ9NQX4 1742 aa20.42■□□□□ 0.86
UPF1-203ENST00000594504 TROQ12816 1431 aaPredicted RBP20.41■□□□□ 0.86
UPF1-203ENST00000594504 POGZQ7Z3K3 1410 aa20.4■□□□□ 0.86
UPF1-203ENST00000594504 MAGI2Q86UL8 1455 aa20.38■□□□□ 0.85
UPF1-203ENST00000594504 AFAP1Q8N556 730 aa20.38■□□□□ 0.85
UPF1-203ENST00000594504 ARHGAP5Q13017 1502 aa20.36■□□□□ 0.85
UPF1-203ENST00000594504 CLIP1P30622 1438 aa20.36■□□□□ 0.85
UPF1-203ENST00000594504 HSPA2P54652 639 aa20.34■□□□□ 0.85
UPF1-203ENST00000594504 MYT1LQ9UL68 1186 aa20.34■□□□□ 0.85
UPF1-203ENST00000594504 ATP10AO60312 1499 aa20.34■□□□□ 0.85
UPF1-203ENST00000594504 LMTK3Q96Q04 1460 aa20.34■□□□□ 0.85
UPF1-203ENST00000594504 PCF11O94913 1555 aaKnown RBP20.34■□□□□ 0.85
UPF1-203ENST00000594504 CASKIN1Q8WXD9 1431 aa20.33■□□□□ 0.84
UPF1-203ENST00000594504 CDC42BPBQ9Y5S2 1711 aa20.33■□□□□ 0.84
UPF1-203ENST00000594504 C9orf84Q5VXU9 1444 aa20.29■□□□□ 0.84
UPF1-203ENST00000594504 FER1L4A9Z1Z3 1794 aa20.29■□□□□ 0.84
UPF1-203ENST00000594504 CEBPAP49715 358 aaPredicted RBP20.29■□□□□ 0.84
UPF1-203ENST00000594504 ZNF518AQ6AHZ1 1483 aa20.28■□□□□ 0.84
UPF1-203ENST00000594504 CCDC18Q5T9S5 1454 aa20.27■□□□□ 0.84
UPF1-203ENST00000594504 ARHGEF12Q9NZN5 1544 aa20.27■□□□□ 0.83
UPF1-203ENST00000594504 TRAPPC8Q9Y2L5 1435 aa20.26■□□□□ 0.83
UPF1-203ENST00000594504 KDM5CP41229 1560 aa20.25■□□□□ 0.83
UPF1-203ENST00000594504 PREX2Q70Z35 1606 aa20.24■□□□□ 0.83
UPF1-203ENST00000594504 ZNF777Q9ULD5 760 aaPredicted RBP20.23■□□□□ 0.83
UPF1-203ENST00000594504 CDC42BPAQ5VT25 1732 aa20.22■□□□□ 0.83
UPF1-203ENST00000594504 DIP2CQ9Y2E4 1556 aa20.21■□□□□ 0.83
UPF1-203ENST00000594504 FBXO41Q8TF61 875 aa20.21■□□□□ 0.83
UPF1-203ENST00000594504 FYCO1Q9BQS8 1478 aa20.21■□□□□ 0.83
UPF1-203ENST00000594504 ITSN2Q9NZM3 1697 aa20.19■□□□□ 0.82
UPF1-203ENST00000594504 ABCC1P33527 1531 aa20.19■□□□□ 0.82
UPF1-203ENST00000594504 ABCA6Q8N139 1617 aa20.19■□□□□ 0.82
UPF1-203ENST00000594504 MLH3Q9UHC1 1453 aa20.18■□□□□ 0.82
UPF1-203ENST00000594504 HNRNPMP52272 730 aaKnown RBP eCLIP20.17■□□□□ 0.82
UPF1-203ENST00000594504 GPATCH8Q9UKJ3 1502 aaKnown RBP20.15■□□□□ 0.82
UPF1-203ENST00000594504 KIDINS220Q9ULH0 1771 aa20.14■□□□□ 0.81
UPF1-203ENST00000594504 SAMD9LQ8IVG5 1584 aa20.13■□□□□ 0.81
UPF1-203ENST00000594504 REREQ9P2R6 1566 aa20.12■□□□□ 0.81
UPF1-203ENST00000594504 PREX1Q8TCU6 1659 aa20.1■□□□□ 0.81
UPF1-203ENST00000594504 CFDP1Q9UEE9 299 aaPredicted RBP20.1■□□□□ 0.81
UPF1-203ENST00000594504 SYCP2Q9BX26 1530 aa20.09■□□□□ 0.81
UPF1-203ENST00000594504 ESF1Q9H501 851 aaKnown RBP20.09■□□□□ 0.81
UPF1-203ENST00000594504 CCNB3Q8WWL7 1395 aa20.08■□□□□ 0.81
UPF1-203ENST00000594504 AGLP35573 1532 aa20.08■□□□□ 0.81
UPF1-203ENST00000594504 MTUS2Q5JR59 1369 aa20.08■□□□□ 0.8
UPF1-203ENST00000594504 SPAG9O60271 1321 aaKnown RBP20.07■□□□□ 0.8
UPF1-203ENST00000594504 C3P01024 1663 aa20.07■□□□□ 0.8
UPF1-203ENST00000594504 ZNF644Q9H582 1327 aaPredicted RBP20.05■□□□□ 0.8
UPF1-203ENST00000594504 SETD1BQ9UPS6 1966 aaKnown RBP20.04■□□□□ 0.8
UPF1-203ENST00000594504 UHRF1BP1Q6BDS2 1440 aa20.04■□□□□ 0.8
UPF1-203ENST00000594504 CERKQ8TCT0 537 aa20.04■□□□□ 0.8
UPF1-203ENST00000594504 SUPT6HQ7KZ85 1726 aaKnown RBP20.04■□□□□ 0.8
UPF1-203ENST00000594504 STRCQ7RTU9 1775 aa20.03■□□□□ 0.8
UPF1-203ENST00000594504 CEP162Q5TB80 1403 aa20.02■□□□□ 0.79
UPF1-203ENST00000594504 KIAA1107Q9UPP5 1409 aa20.02■□□□□ 0.79
UPF1-203ENST00000594504 ATP7AQ04656 1500 aa20■□□□□ 0.79
UPF1-203ENST00000594504 LOC105371045A0A1W2PR82 267 aa19.98■□□□□ 0.79
UPF1-203ENST00000594504 TIAM1Q13009 1591 aa19.98■□□□□ 0.79
UPF1-203ENST00000594504 PLEKHH2Q8IVE3 1493 aa19.98■□□□□ 0.79
UPF1-203ENST00000594504 ZMYM3Q14202 1370 aa19.97■□□□□ 0.79
UPF1-203ENST00000594504 GGT6Q6P531 493 aa19.97■□□□□ 0.79
UPF1-203ENST00000594504 CNTLNQ9NXG0 1405 aa19.96■□□□□ 0.79
UPF1-203ENST00000594504 DMRT2Q9Y5R5 561 aa19.96■□□□□ 0.79
UPF1-203ENST00000594504 A2MP01023 1474 aa19.96■□□□□ 0.79
UPF1-203ENST00000594504 EHBP1L1Q8N3D4 1523 aa19.96■□□□□ 0.79
UPF1-203ENST00000594504 INO80Q9ULG1 1556 aaPredicted RBP19.95■□□□□ 0.78
UPF1-203ENST00000594504 MBD5Q9P267 1494 aa19.93■□□□□ 0.78
UPF1-203ENST00000594504 CLTCQ00610 1675 aaKnown RBP19.93■□□□□ 0.78
UPF1-203ENST00000594504 PLXNC1O60486 1568 aa19.91■□□□□ 0.78
UPF1-203ENST00000594504 MROH2AA6NES4 1674 aa19.91■□□□□ 0.78
UPF1-203ENST00000594504 NCOA2Q15596 1464 aa19.88■□□□□ 0.77
UPF1-203ENST00000594504 ADGBQ8N7X0 1667 aa19.87■□□□□ 0.77
UPF1-203ENST00000594504 PTPRTO14522 1441 aa19.87■□□□□ 0.77
UPF1-203ENST00000594504 NPATQ14207 1427 aa19.86■□□□□ 0.77
UPF1-203ENST00000594504 NCKAP5LQ9HCH0 1330 aa19.86■□□□□ 0.77
UPF1-203ENST00000594504 CAMSAP1Q5T5Y3 1602 aa19.85■□□□□ 0.77
UPF1-203ENST00000594504 RTEL1-TNFRSF6BF6WH68 1400 aa19.85■□□□□ 0.77
UPF1-203ENST00000594504 PTPRKQ15262 1439 aa19.85■□□□□ 0.77
UPF1-203ENST00000594504 NCOA1Q15788 1441 aa19.85■□□□□ 0.77
UPF1-203ENST00000594504 DHX29Q7Z478 1369 aaKnown RBP19.84■□□□□ 0.77
UPF1-203ENST00000594504 KIF3BO15066 747 aa19.83■□□□□ 0.77
UPF1-203ENST00000594504 CAMSAP2Q08AD1 1489 aa19.83■□□□□ 0.76
UPF1-203ENST00000594504 KANK4Q5T7N3 995 aaPredicted RBP19.81■□□□□ 0.76
UPF1-203ENST00000594504 PPP6R1Q9UPN7 881 aa19.81■□□□□ 0.76
UPF1-203ENST00000594504 CCDC141Q6ZP82 1450 aa19.79■□□□□ 0.76
UPF1-203ENST00000594504 VPS8Q8N3P4 1428 aa19.79■□□□□ 0.76
UPF1-203ENST00000594504 RSPH4AQ5TD94 716 aa19.79■□□□□ 0.76
UPF1-203ENST00000594504 FBXO31Q5XUX0 539 aaPredicted RBP19.79■□□□□ 0.76
UPF1-203ENST00000594504 LTBP4Q8N2S1 1624 aa19.79■□□□□ 0.76
UPF1-203ENST00000594504 MYO3AQ8NEV4 1616 aa19.79■□□□□ 0.76
UPF1-203ENST00000594504 LRRC9Q6ZRR7 1453 aa19.78■□□□□ 0.76
UPF1-203ENST00000594504 TSPY4P0CV99 314 aa19.76■□□□□ 0.75
UPF1-203ENST00000594504 TSPY10P0CW01 314 aa19.76■□□□□ 0.75
UPF1-203ENST00000594504 CEP170BQ9Y4F5 1589 aaPredicted RBP19.75■□□□□ 0.75
UPF1-203ENST00000594504 ZNF142P52746 1687 aaPredicted RBP19.75■□□□□ 0.75
UPF1-203ENST00000594504 ZNF335Q9H4Z2 1342 aaPredicted RBP19.74■□□□□ 0.75
Retrieved 100 of 20,778 RNA–protein pairs in 61.2 ms