RNA–Protein interactions for RNA: ENST00000593829.5

LSM4-203, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LSM4, Length 1,908 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-203ENST00000593829 KANK4Q5T7N3 995 aaPredicted RBP30.69■■■□□ 2.5
LSM4-203ENST00000593829 CCNB3Q8WWL7 1395 aa30.68■■■□□ 2.5
LSM4-203ENST00000593829 CDC42BPAQ5VT25 1732 aa30.67■■■□□ 2.5
LSM4-203ENST00000593829 CDC42BPBQ9Y5S2 1711 aa30.67■■■□□ 2.5
LSM4-203ENST00000593829 GPATCH8Q9UKJ3 1502 aaKnown RBP30.67■■■□□ 2.5
LSM4-203ENST00000593829 SUPT6HQ7KZ85 1726 aaKnown RBP30.66■■■□□ 2.5
LSM4-203ENST00000593829 NCOA2Q15596 1464 aa30.64■■■□□ 2.5
LSM4-203ENST00000593829 ADGRL1O94910 1474 aa30.64■■■□□ 2.49
LSM4-203ENST00000593829 RAPGEF3O95398 923 aa30.63■■■□□ 2.49
LSM4-203ENST00000593829 DENND4BO75064 1496 aaPredicted RBP30.62■■■□□ 2.49
LSM4-203ENST00000593829 SCAPERQ9BY12 1400 aa30.6■■■□□ 2.49
LSM4-203ENST00000593829 CFDP1Q9UEE9 299 aaPredicted RBP30.6■■■□□ 2.49
LSM4-203ENST00000593829 ZNF777Q9ULD5 760 aaPredicted RBP30.56■■■□□ 2.48
LSM4-203ENST00000593829 ITSN2Q9NZM3 1697 aa30.55■■■□□ 2.48
LSM4-203ENST00000593829 FRMPD1Q5SYB0 1578 aa30.55■■■□□ 2.48
LSM4-203ENST00000593829 RICTORQ6R327 1708 aa30.52■■■□□ 2.48
LSM4-203ENST00000593829 POGZQ7Z3K3 1410 aa30.52■■■□□ 2.48
LSM4-203ENST00000593829 ABCC1P33527 1531 aa30.51■■■□□ 2.47
LSM4-203ENST00000593829 SAMD9LQ8IVG5 1584 aa30.49■■■□□ 2.47
LSM4-203ENST00000593829 ZNF518AQ6AHZ1 1483 aa30.46■■■□□ 2.47
LSM4-203ENST00000593829 PLEKHH2Q8IVE3 1493 aa30.46■■■□□ 2.47
LSM4-203ENST00000593829 ARHGEF12Q9NZN5 1544 aa30.46■■■□□ 2.47
LSM4-203ENST00000593829 ZMYM4Q5VZL5 1548 aa30.44■■■□□ 2.46
LSM4-203ENST00000593829 KIAA1107Q9UPP5 1409 aa30.44■■■□□ 2.46
LSM4-203ENST00000593829 AFAP1Q8N556 730 aa30.43■■■□□ 2.46
LSM4-203ENST00000593829 ZNF644Q9H582 1327 aaPredicted RBP30.42■■■□□ 2.46
LSM4-203ENST00000593829 MYOM3Q5VTT5 1437 aa30.42■■■□□ 2.46
LSM4-203ENST00000593829 TRAPPC8Q9Y2L5 1435 aa30.41■■■□□ 2.46
LSM4-203ENST00000593829 HNRNPMP52272 730 aaKnown RBP eCLIP30.41■■■□□ 2.466e-16■□□□□ 10.9
LSM4-203ENST00000593829 SYCP2Q9BX26 1530 aa30.41■■■□□ 2.46
LSM4-203ENST00000593829 MAGI2Q86UL8 1455 aa30.4■■■□□ 2.46
LSM4-203ENST00000593829 KDM5CP41229 1560 aa30.38■■■□□ 2.45
LSM4-203ENST00000593829 MIA2Q96PC5 1412 aa30.37■■■□□ 2.45
LSM4-203ENST00000593829 CAMSAP2Q08AD1 1489 aa30.35■■■□□ 2.45
LSM4-203ENST00000593829 ZFYVE16Q7Z3T8 1539 aa30.35■■■□□ 2.45
LSM4-203ENST00000593829 ARHGEF40Q8TER5 1519 aa30.34■■■□□ 2.45
LSM4-203ENST00000593829 YEATS2Q9ULM3 1422 aa30.32■■■□□ 2.44
LSM4-203ENST00000593829 MYT1LQ9UL68 1186 aa30.32■■■□□ 2.44
LSM4-203ENST00000593829 MBD5Q9P267 1494 aa30.31■■■□□ 2.44
LSM4-203ENST00000593829 MLH3Q9UHC1 1453 aa30.3■■■□□ 2.44
LSM4-203ENST00000593829 HECW2Q9P2P5 1572 aa30.3■■■□□ 2.44
LSM4-203ENST00000593829 PPARGC1BQ86YN6 1023 aaKnown RBP30.28■■■□□ 2.44
LSM4-203ENST00000593829 RSPH4AQ5TD94 716 aa30.27■■■□□ 2.44
LSM4-203ENST00000593829 SPAG9O60271 1321 aaKnown RBP30.26■■■□□ 2.43
LSM4-203ENST00000593829 FGD6Q6ZV73 1430 aa30.26■■■□□ 2.43
LSM4-203ENST00000593829 ATP10AO60312 1499 aa30.23■■■□□ 2.43
LSM4-203ENST00000593829 CCDC141Q6ZP82 1450 aa30.22■■■□□ 2.43
LSM4-203ENST00000593829 PTPN23Q9H3S7 1636 aa30.21■■■□□ 2.43
LSM4-203ENST00000593829 ARHGEF5Q12774 1597 aa30.21■■■□□ 2.43
LSM4-203ENST00000593829 KIDINS220Q9ULH0 1771 aa30.2■■■□□ 2.43
LSM4-203ENST00000593829 ARID4BQ4LE39 1312 aaPredicted RBP30.18■■■□□ 2.42
LSM4-203ENST00000593829 C9orf84Q5VXU9 1444 aa30.18■■■□□ 2.42
LSM4-203ENST00000593829 DIP2CQ9Y2E4 1556 aa30.18■■■□□ 2.42
LSM4-203ENST00000593829 ATP7AQ04656 1500 aa30.17■■■□□ 2.42
LSM4-203ENST00000593829 ABCA6Q8N139 1617 aa30.17■■■□□ 2.42
LSM4-203ENST00000593829 TCOF1Q13428 1488 aaKnown RBP30.17■■■□□ 2.42
LSM4-203ENST00000593829 INO80Q9ULG1 1556 aaPredicted RBP30.17■■■□□ 2.42
LSM4-203ENST00000593829 TSPY4P0CV99 314 aa30.15■■■□□ 2.42
LSM4-203ENST00000593829 TSPY10P0CW01 314 aa30.15■■■□□ 2.42
LSM4-203ENST00000593829 RTEL1-TNFRSF6BF6WH68 1400 aa30.15■■■□□ 2.42
LSM4-203ENST00000593829 KDM4FA0A1W2PPD8 638 aa30.14■■■□□ 2.42
LSM4-203ENST00000593829 REREQ9P2R6 1566 aa30.1■■■□□ 2.41
LSM4-203ENST00000593829 SIGLEC1Q9BZZ2 1709 aa30.09■■■□□ 2.41
LSM4-203ENST00000593829 FAM50AQ14320 339 aaKnown RBP30.08■■■□□ 2.41
LSM4-203ENST00000593829 ABCC5O15440 1437 aa30.05■■■□□ 2.4
LSM4-203ENST00000593829 BCORL1Q5H9F3 1711 aa30.04■■■□□ 2.4
LSM4-203ENST00000593829 MAST1Q9Y2H9 1570 aa30.04■■■□□ 2.4
LSM4-203ENST00000593829 DAPK1P53355 1430 aa30.03■■■□□ 2.4
LSM4-203ENST00000593829 DNMT1P26358 1616 aaKnown RBP30.03■■■□□ 2.4
LSM4-203ENST00000593829 HRCP23327 699 aa30.02■■■□□ 2.4
LSM4-203ENST00000593829 A2MP01023 1474 aa30.02■■■□□ 2.4
LSM4-203ENST00000593829 AGLP35573 1532 aa30.01■■■□□ 2.4
LSM4-203ENST00000593829 ADGBQ8N7X0 1667 aa30.01■■■□□ 2.39
LSM4-203ENST00000593829 SHANK2Q9UPX8 1470 aa30■■■□□ 2.39
LSM4-203ENST00000593829 MLECQ14165 292 aa30■■■□□ 2.39
LSM4-203ENST00000593829 ADAMTSL3P82987 1691 aa29.99■■■□□ 2.39
LSM4-203ENST00000593829 CROCC2H7BZ55 1655 aa29.98■■■□□ 2.39
LSM4-203ENST00000593829 AEBP2Q6ZN18 517 aaPredicted RBP29.98■■■□□ 2.39
LSM4-203ENST00000593829 PLXNC1O60486 1568 aa29.97■■■□□ 2.39
LSM4-203ENST00000593829 DHX29Q7Z478 1369 aaKnown RBP29.96■■■□□ 2.39
LSM4-203ENST00000593829 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP29.94■■■□□ 2.381e-6■■■■■ 37.1
LSM4-203ENST00000593829 RRBP1Q9P2E9 1410 aaKnown RBP29.92■■■□□ 2.38
LSM4-203ENST00000593829 MADDQ8WXG6 1647 aa29.91■■■□□ 2.38
LSM4-203ENST00000593829 CHIC2Q9UKJ5 165 aa29.9■■■□□ 2.38
LSM4-203ENST00000593829 ANKRD30AQ9BXX3 1397 aa29.87■■■□□ 2.37
LSM4-203ENST00000593829 KIF15Q9NS87 1388 aa29.86■■■□□ 2.37
LSM4-203ENST00000593829 RRP7BPQ9NSQ0 103 aa29.86■■■□□ 2.37
LSM4-203ENST00000593829 DUOX2Q9NRD8 1548 aa29.84■■■□□ 2.37
LSM4-203ENST00000593829 KIF3BO15066 747 aa29.83■■■□□ 2.37
LSM4-203ENST00000593829 FER1L4A9Z1Z3 1794 aa29.83■■■□□ 2.37
LSM4-203ENST00000593829 PTPRMP28827 1452 aa29.83■■■□□ 2.37
LSM4-203ENST00000593829 NCOA1Q15788 1441 aa29.83■■■□□ 2.37
LSM4-203ENST00000593829 ADGRL2O95490 1459 aa29.82■■■□□ 2.36
LSM4-203ENST00000593829 RIMS1Q86UR5 1692 aaKnown RBP29.82■■■□□ 2.36
LSM4-203ENST00000593829 PTPRKQ15262 1439 aa29.82■■■□□ 2.36
LSM4-203ENST00000593829 ITGAEP38570 1179 aa29.81■■■□□ 2.36
LSM4-203ENST00000593829 GGT6Q6P531 493 aa29.81■■■□□ 2.36
LSM4-203ENST00000593829 ESF1Q9H501 851 aaKnown RBP29.81■■■□□ 2.36
LSM4-203ENST00000593829 PPP6R1Q9UPN7 881 aa29.77■■■□□ 2.36
LSM4-203ENST00000593829 EIF2AK4Q9P2K8 1649 aaKnown RBP29.75■■■□□ 2.35
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms