RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 ADGRL1O94910 1474 aa25.09■■□□□ 1.61
LIG3-215ENST00000592690 EHBP1L1Q8N3D4 1523 aa25.07■■□□□ 1.6
LIG3-215ENST00000592690 MTUS2Q5JR59 1369 aa25.05■■□□□ 1.6
LIG3-215ENST00000592690 TIAM1Q13009 1591 aa25.05■■□□□ 1.6
LIG3-215ENST00000592690 EFCAB2Q5VUJ9 269 aa25.05■■□□□ 1.6
LIG3-215ENST00000592690 ZMYM4Q5VZL5 1548 aa25.05■■□□□ 1.6
LIG3-215ENST00000592690 SCAPERQ9BY12 1400 aa25.04■■□□□ 1.6
LIG3-215ENST00000592690 ARHGEF40Q8TER5 1519 aa25.02■■□□□ 1.6
LIG3-215ENST00000592690 KDM4FA0A1W2PPD8 638 aa25.02■■□□□ 1.6
LIG3-215ENST00000592690 POGZQ7Z3K3 1410 aa25.02■■□□□ 1.6
LIG3-215ENST00000592690 ITSN2Q9NZM3 1697 aa25.01■■□□□ 1.59
LIG3-215ENST00000592690 ABCC1P33527 1531 aa24.99■■□□□ 1.59
LIG3-215ENST00000592690 GPATCH8Q9UKJ3 1502 aaKnown RBP24.99■■□□□ 1.59
LIG3-215ENST00000592690 SUPT6HQ7KZ85 1726 aaKnown RBP24.97■■□□□ 1.59
LIG3-215ENST00000592690 SAMD9LQ8IVG5 1584 aa24.97■■□□□ 1.59
LIG3-215ENST00000592690 ZFYVE16Q7Z3T8 1539 aa24.96■■□□□ 1.59
LIG3-215ENST00000592690 KDM5CP41229 1560 aa24.94■■□□□ 1.58
LIG3-215ENST00000592690 ARHGEF12Q9NZN5 1544 aa24.94■■□□□ 1.58
LIG3-215ENST00000592690 ZNF518AQ6AHZ1 1483 aa24.93■■□□□ 1.58
LIG3-215ENST00000592690 YEATS2Q9ULM3 1422 aa24.93■■□□□ 1.58
LIG3-215ENST00000592690 CCNB3Q8WWL7 1395 aa24.93■■□□□ 1.58
LIG3-215ENST00000592690 SIGLEC1Q9BZZ2 1709 aa24.92■■□□□ 1.58
LIG3-215ENST00000592690 MAGI2Q86UL8 1455 aa24.91■■□□□ 1.58
LIG3-215ENST00000592690 MAP3K1Q13233 1512 aa24.91■■□□□ 1.58
LIG3-215ENST00000592690 LRRC9Q6ZRR7 1453 aa24.9■■□□□ 1.58
LIG3-215ENST00000592690 NCOA2Q15596 1464 aa24.89■■□□□ 1.58
LIG3-215ENST00000592690 HECW2Q9P2P5 1572 aa24.89■■□□□ 1.58
LIG3-215ENST00000592690 SYCP2Q9BX26 1530 aa24.89■■□□□ 1.57
LIG3-215ENST00000592690 TRAPPC8Q9Y2L5 1435 aa24.87■■□□□ 1.57
LIG3-215ENST00000592690 BCORL1Q5H9F3 1711 aa24.87■■□□□ 1.57
LIG3-215ENST00000592690 ZNF777Q9ULD5 760 aaPredicted RBP24.87■■□□□ 1.57
LIG3-215ENST00000592690 AFAP1Q8N556 730 aa24.86■■□□□ 1.57
LIG3-215ENST00000592690 ADAMTSL3P82987 1691 aa24.85■■□□□ 1.57
LIG3-215ENST00000592690 CFDP1Q9UEE9 299 aaPredicted RBP24.84■■□□□ 1.57
LIG3-215ENST00000592690 ABCA6Q8N139 1617 aa24.83■■□□□ 1.57
LIG3-215ENST00000592690 KIDINS220Q9ULH0 1771 aa24.82■■□□□ 1.56
LIG3-215ENST00000592690 KANK4Q5T7N3 995 aaPredicted RBP24.82■■□□□ 1.56
LIG3-215ENST00000592690 DIP2CQ9Y2E4 1556 aa24.82■■□□□ 1.56
LIG3-215ENST00000592690 PLEKHH2Q8IVE3 1493 aa24.8■■□□□ 1.56
LIG3-215ENST00000592690 ATP10AO60312 1499 aa24.79■■□□□ 1.56
LIG3-215ENST00000592690 MLH3Q9UHC1 1453 aa24.79■■□□□ 1.56
LIG3-215ENST00000592690 ARID4BQ4LE39 1312 aaPredicted RBP24.78■■□□□ 1.56
LIG3-215ENST00000592690 MADDQ8WXG6 1647 aa24.78■■□□□ 1.56
LIG3-215ENST00000592690 KIAA1107Q9UPP5 1409 aa24.78■■□□□ 1.56
LIG3-215ENST00000592690 C9orf84Q5VXU9 1444 aa24.77■■□□□ 1.56
LIG3-215ENST00000592690 HNRNPMP52272 730 aaKnown RBP eCLIP24.76■■□□□ 1.55
LIG3-215ENST00000592690 ZNF644Q9H582 1327 aaPredicted RBP24.76■■□□□ 1.55
LIG3-215ENST00000592690 INO80Q9ULG1 1556 aaPredicted RBP24.74■■□□□ 1.55
LIG3-215ENST00000592690 CAMSAP2Q08AD1 1489 aa24.73■■□□□ 1.55
LIG3-215ENST00000592690 MYT1LQ9UL68 1186 aa24.73■■□□□ 1.55
LIG3-215ENST00000592690 RIMS1Q86UR5 1692 aaKnown RBP24.72■■□□□ 1.55
LIG3-215ENST00000592690 REREQ9P2R6 1566 aa24.72■■□□□ 1.55
LIG3-215ENST00000592690 APLP2Q06481 763 aa24.71■■□□□ 1.55
LIG3-215ENST00000592690 ATP7AQ04656 1500 aa24.71■■□□□ 1.55
LIG3-215ENST00000592690 MBD5Q9P267 1494 aa24.7■■□□□ 1.55
LIG3-215ENST00000592690 FER1L4A9Z1Z3 1794 aa24.7■■□□□ 1.55
LIG3-215ENST00000592690 SPAG9O60271 1321 aaKnown RBP24.66■■□□□ 1.54
LIG3-215ENST00000592690 MYOM3Q5VTT5 1437 aa24.66■■□□□ 1.54
LIG3-215ENST00000592690 PTPRMP28827 1452 aa24.65■■□□□ 1.54
LIG3-215ENST00000592690 ARHGEF5Q12774 1597 aa24.63■■□□□ 1.53
LIG3-215ENST00000592690 MLECQ14165 292 aa24.63■■□□□ 1.53
LIG3-215ENST00000592690 CCDC141Q6ZP82 1450 aa24.63■■□□□ 1.53
LIG3-215ENST00000592690 ADGBQ8N7X0 1667 aa24.62■■□□□ 1.53
LIG3-215ENST00000592690 AGLP35573 1532 aa24.62■■□□□ 1.53
LIG3-215ENST00000592690 MIA2Q96PC5 1412 aa24.6■■□□□ 1.53
LIG3-215ENST00000592690 PLXNC1O60486 1568 aa24.59■■□□□ 1.53
LIG3-215ENST00000592690 PTPN23Q9H3S7 1636 aa24.57■■□□□ 1.52
LIG3-215ENST00000592690 RTEL1-TNFRSF6BF6WH68 1400 aa24.55■■□□□ 1.52
LIG3-215ENST00000592690 A2MP01023 1474 aa24.55■■□□□ 1.52
LIG3-215ENST00000592690 CROCC2H7BZ55 1655 aa24.52■■□□□ 1.52
LIG3-215ENST00000592690 FGD6Q6ZV73 1430 aa24.52■■□□□ 1.52
LIG3-215ENST00000592690 MAST1Q9Y2H9 1570 aa24.51■■□□□ 1.51
LIG3-215ENST00000592690 RSPH4AQ5TD94 716 aa24.5■■□□□ 1.51
LIG3-215ENST00000592690 TCOF1Q13428 1488 aaKnown RBP24.47■■□□□ 1.51
LIG3-215ENST00000592690 C3P01024 1663 aa24.46■■□□□ 1.51
LIG3-215ENST00000592690 DNMT1P26358 1616 aaKnown RBP24.46■■□□□ 1.51
LIG3-215ENST00000592690 PLPPR3Q6T4P5 718 aa24.46■■□□□ 1.51
LIG3-215ENST00000592690 TSPY4P0CV99 314 aa24.43■■□□□ 1.5
LIG3-215ENST00000592690 TSPY10P0CW01 314 aa24.43■■□□□ 1.5
LIG3-215ENST00000592690 CLTCQ00610 1675 aaKnown RBP24.43■■□□□ 1.5
LIG3-215ENST00000592690 MROH2AA6NES4 1674 aa24.42■■□□□ 1.5
LIG3-215ENST00000592690 DHX29Q7Z478 1369 aaKnown RBP24.42■■□□□ 1.5
LIG3-215ENST00000592690 ABCC5O15440 1437 aa24.4■■□□□ 1.5
LIG3-215ENST00000592690 SHANK2Q9UPX8 1470 aa24.39■■□□□ 1.5
LIG3-215ENST00000592690 DAPK1P53355 1430 aa24.38■■□□□ 1.49
LIG3-215ENST00000592690 CEBPAP49715 358 aaPredicted RBP24.38■■□□□ 1.49
LIG3-215ENST00000592690 PREX1Q8TCU6 1659 aa24.37■■□□□ 1.49
LIG3-215ENST00000592690 LMTK3Q96Q04 1460 aa24.37■■□□□ 1.49
LIG3-215ENST00000592690 CNTLNQ9NXG0 1405 aa24.36■■□□□ 1.49
LIG3-215ENST00000592690 PPARGC1BQ86YN6 1023 aaKnown RBP24.36■■□□□ 1.49
LIG3-215ENST00000592690 ESF1Q9H501 851 aaKnown RBP24.35■■□□□ 1.49
LIG3-215ENST00000592690 GGT6Q6P531 493 aa24.34■■□□□ 1.49
LIG3-215ENST00000592690 EIF2AK4Q9P2K8 1649 aaKnown RBP24.34■■□□□ 1.49
LIG3-215ENST00000592690 SETD1BQ9UPS6 1966 aaKnown RBP24.33■■□□□ 1.49
LIG3-215ENST00000592690 RNF17Q9BXT8 1623 aaKnown RBP24.32■■□□□ 1.48
LIG3-215ENST00000592690 KIF3BO15066 747 aa24.31■■□□□ 1.48
LIG3-215ENST00000592690 DUOX2Q9NRD8 1548 aa24.3■■□□□ 1.48
LIG3-215ENST00000592690 FAM50AQ14320 339 aaKnown RBP24.29■■□□□ 1.48
LIG3-215ENST00000592690 KIF15Q9NS87 1388 aa24.27■■□□□ 1.48
LIG3-215ENST00000592690 MROH1Q8NDA8 1641 aa24.26■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 14.1 ms