RNA–Protein interactions for RNA: ENST00000592106.5

VMP1-214, Transcript of vacuole membrane protein 1, humanhuman

TSL 5

Gene VMP1, Length 341 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-214ENST00000592106 ATP1B4Q9UN42 357 aaPredicted RBP16.64■□□□□ 0.25
VMP1-214ENST00000592106 RICTORQ6R327 1708 aa16.62■□□□□ 0.25
VMP1-214ENST00000592106 KCNA4P22459 653 aa16.62■□□□□ 0.25
VMP1-214ENST00000592106 ARID4BQ4LE39 1312 aaPredicted RBP16.61■□□□□ 0.25
VMP1-214ENST00000592106 CLIP1P30622 1438 aa16.61■□□□□ 0.25
VMP1-214ENST00000592106 ZMYM4Q5VZL5 1548 aa16.6■□□□□ 0.25
VMP1-214ENST00000592106 ADAMTSL3P82987 1691 aa16.6■□□□□ 0.25
VMP1-214ENST00000592106 KIF14Q15058 1648 aa16.59■□□□□ 0.25
VMP1-214ENST00000592106 BCORL1Q5H9F3 1711 aa16.59■□□□□ 0.25
VMP1-214ENST00000592106 PLCH2O75038 1416 aa16.59■□□□□ 0.25
VMP1-214ENST00000592106 MYO5CQ9NQX4 1742 aa16.59■□□□□ 0.25
VMP1-214ENST00000592106 MAGI2Q86UL8 1455 aa16.58■□□□□ 0.24
VMP1-214ENST00000592106 ZFYVE16Q7Z3T8 1539 aa16.58■□□□□ 0.24
VMP1-214ENST00000592106 PTPRMP28827 1452 aa16.57■□□□□ 0.24
VMP1-214ENST00000592106 POGZQ7Z3K3 1410 aa16.57■□□□□ 0.24
VMP1-214ENST00000592106 TROQ12816 1431 aaPredicted RBP16.56■□□□□ 0.24
VMP1-214ENST00000592106 MADDQ8WXG6 1647 aa16.55■□□□□ 0.24
VMP1-214ENST00000592106 CCDC18Q5T9S5 1454 aa16.54■□□□□ 0.24
VMP1-214ENST00000592106 SCAPERQ9BY12 1400 aa16.54■□□□□ 0.24
VMP1-214ENST00000592106 EFCAB2Q5VUJ9 269 aa16.53■□□□□ 0.24
VMP1-214ENST00000592106 PCF11O94913 1555 aaKnown RBP16.52■□□□□ 0.24
VMP1-214ENST00000592106 ARHGAP5Q13017 1502 aa16.51■□□□□ 0.23
VMP1-214ENST00000592106 CASKIN1Q8WXD9 1431 aa16.51■□□□□ 0.23
VMP1-214ENST00000592106 YEATS2Q9ULM3 1422 aa16.5■□□□□ 0.23
VMP1-214ENST00000592106 RIMS1Q86UR5 1692 aaKnown RBP16.5■□□□□ 0.23
VMP1-214ENST00000592106 ZNF518AQ6AHZ1 1483 aa16.49■□□□□ 0.23
VMP1-214ENST00000592106 LRRIQ1Q96JM4 1722 aa16.48■□□□□ 0.23
VMP1-214ENST00000592106 FYCO1Q9BQS8 1478 aa16.48■□□□□ 0.23
VMP1-214ENST00000592106 C9orf84Q5VXU9 1444 aa16.46■□□□□ 0.23
VMP1-214ENST00000592106 ATP10AO60312 1499 aa16.45■□□□□ 0.22
VMP1-214ENST00000592106 PREX2Q70Z35 1606 aa16.45■□□□□ 0.22
VMP1-214ENST00000592106 KDM5CP41229 1560 aa16.43■□□□□ 0.22
VMP1-214ENST00000592106 MYT1LQ9UL68 1186 aa16.43■□□□□ 0.22
VMP1-214ENST00000592106 FER1L4A9Z1Z3 1794 aa16.43■□□□□ 0.22
VMP1-214ENST00000592106 CDC42BPBQ9Y5S2 1711 aa16.41■□□□□ 0.22
VMP1-214ENST00000592106 SIGLEC1Q9BZZ2 1709 aa16.4■□□□□ 0.22
VMP1-214ENST00000592106 NPM3O75607 178 aaKnown RBP16.4■□□□□ 0.22
VMP1-214ENST00000592106 MLECQ14165 292 aa16.4■□□□□ 0.22
VMP1-214ENST00000592106 RNF216Q9NWF9 866 aaPredicted RBP16.4■□□□□ 0.22
VMP1-214ENST00000592106 ABCC1P33527 1531 aa16.4■□□□□ 0.22
VMP1-214ENST00000592106 LMTK3Q96Q04 1460 aa16.39■□□□□ 0.21
VMP1-214ENST00000592106 ARHGEF12Q9NZN5 1544 aa16.39■□□□□ 0.21
VMP1-214ENST00000592106 ITSN2Q9NZM3 1697 aa16.38■□□□□ 0.21
VMP1-214ENST00000592106 REREQ9P2R6 1566 aa16.37■□□□□ 0.21
VMP1-214ENST00000592106 DIP2CQ9Y2E4 1556 aa16.37■□□□□ 0.21
VMP1-214ENST00000592106 MLH3Q9UHC1 1453 aa16.36■□□□□ 0.21
VMP1-214ENST00000592106 AFAP1Q8N556 730 aa16.36■□□□□ 0.21
VMP1-214ENST00000592106 CDC42BPAQ5VT25 1732 aa16.36■□□□□ 0.21
VMP1-214ENST00000592106 POTEDQ86YR6 584 aa16.35■□□□□ 0.21
VMP1-214ENST00000592106 ABCA6Q8N139 1617 aa16.34■□□□□ 0.21
VMP1-214ENST00000592106 HOXD11P31277 338 aaPredicted RBP16.33■□□□□ 0.2
VMP1-214ENST00000592106 MTUS2Q5JR59 1369 aa16.32■□□□□ 0.2
VMP1-214ENST00000592106 TRAPPC8Q9Y2L5 1435 aa16.32■□□□□ 0.2
VMP1-214ENST00000592106 AGLP35573 1532 aa16.3■□□□□ 0.2
VMP1-214ENST00000592106 PLEKHH2Q8IVE3 1493 aa16.3■□□□□ 0.2
VMP1-214ENST00000592106 PREX1Q8TCU6 1659 aa16.3■□□□□ 0.2
VMP1-214ENST00000592106 CCNB3Q8WWL7 1395 aa16.29■□□□□ 0.2
VMP1-214ENST00000592106 FBXO41Q8TF61 875 aa16.29■□□□□ 0.2
VMP1-214ENST00000592106 ESF1Q9H501 851 aaKnown RBP16.29■□□□□ 0.2
VMP1-214ENST00000592106 ZNF777Q9ULD5 760 aaPredicted RBP16.29■□□□□ 0.2
VMP1-214ENST00000592106 SAMD9LQ8IVG5 1584 aa16.29■□□□□ 0.2
VMP1-214ENST00000592106 EHBP1L1Q8N3D4 1523 aa16.29■□□□□ 0.2
VMP1-214ENST00000592106 SYCP2Q9BX26 1530 aa16.29■□□□□ 0.2
VMP1-214ENST00000592106 GPATCH8Q9UKJ3 1502 aaKnown RBP16.29■□□□□ 0.2
VMP1-214ENST00000592106 KIDINS220Q9ULH0 1771 aa16.28■□□□□ 0.2
VMP1-214ENST00000592106 CEP162Q5TB80 1403 aa16.27■□□□□ 0.19
VMP1-214ENST00000592106 HSPA2P54652 639 aa16.26■□□□□ 0.19
VMP1-214ENST00000592106 CFDP1Q9UEE9 299 aaPredicted RBP16.26■□□□□ 0.19
VMP1-214ENST00000592106 KIAA1107Q9UPP5 1409 aa16.26■□□□□ 0.19
VMP1-214ENST00000592106 SPAG9O60271 1321 aaKnown RBP16.25■□□□□ 0.19
VMP1-214ENST00000592106 UHRF1BP1Q6BDS2 1440 aa16.25■□□□□ 0.19
VMP1-214ENST00000592106 CNTLNQ9NXG0 1405 aa16.25■□□□□ 0.19
VMP1-214ENST00000592106 ATP7AQ04656 1500 aa16.23■□□□□ 0.19
VMP1-214ENST00000592106 CEBPAP49715 358 aaPredicted RBP16.21■□□□□ 0.19
VMP1-214ENST00000592106 TIAM1Q13009 1591 aa16.21■□□□□ 0.18
VMP1-214ENST00000592106 INO80Q9ULG1 1556 aaPredicted RBP16.21■□□□□ 0.18
VMP1-214ENST00000592106 C3P01024 1663 aa16.21■□□□□ 0.18
VMP1-214ENST00000592106 HNRNPMP52272 730 aaKnown RBP eCLIP16.2■□□□□ 0.182e-7■■■■□ 25.4
VMP1-214ENST00000592106 SETD1BQ9UPS6 1966 aaKnown RBP16.19■□□□□ 0.18
VMP1-214ENST00000592106 MROH2AA6NES4 1674 aa16.18■□□□□ 0.18
VMP1-214ENST00000592106 A2MP01023 1474 aa16.17■□□□□ 0.18
VMP1-214ENST00000592106 SUPT6HQ7KZ85 1726 aaKnown RBP16.17■□□□□ 0.18
VMP1-214ENST00000592106 PLXNC1O60486 1568 aa16.17■□□□□ 0.18
VMP1-214ENST00000592106 ADGBQ8N7X0 1667 aa16.15■□□□□ 0.18
VMP1-214ENST00000592106 NPATQ14207 1427 aa16.13■□□□□ 0.17
VMP1-214ENST00000592106 RTEL1-TNFRSF6BF6WH68 1400 aa16.12■□□□□ 0.17
VMP1-214ENST00000592106 NCOA2Q15596 1464 aa16.12■□□□□ 0.17
VMP1-214ENST00000592106 VPS8Q8N3P4 1428 aa16.11■□□□□ 0.17
VMP1-214ENST00000592106 CAMSAP2Q08AD1 1489 aa16.1■□□□□ 0.17
VMP1-214ENST00000592106 CCDC141Q6ZP82 1450 aa16.1■□□□□ 0.17
VMP1-214ENST00000592106 MBD5Q9P267 1494 aa16.1■□□□□ 0.17
VMP1-214ENST00000592106 CLTCQ00610 1675 aaKnown RBP16.1■□□□□ 0.17
VMP1-214ENST00000592106 STRCQ7RTU9 1775 aa16.09■□□□□ 0.17
VMP1-214ENST00000592106 RSPH4AQ5TD94 716 aa16.09■□□□□ 0.17
VMP1-214ENST00000592106 CERKQ8TCT0 537 aa16.09■□□□□ 0.17
VMP1-214ENST00000592106 ZNF644Q9H582 1327 aaPredicted RBP16.09■□□□□ 0.17
VMP1-214ENST00000592106 ZMYM3Q14202 1370 aa16.09■□□□□ 0.17
VMP1-214ENST00000592106 GGT6Q6P531 493 aa16.08■□□□□ 0.16
VMP1-214ENST00000592106 PTPRTO14522 1441 aa16.08■□□□□ 0.16
VMP1-214ENST00000592106 SOCS7O14512 581 aa16.06■□□□□ 0.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms