RNA–Protein interactions for RNA: ENST00000590924.5

VAT1-208, Transcript of vesicle amine transport 1, humanhuman

TSL 3

Gene VAT1, Length 613 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAT1-208ENST00000590924 SIGLEC1Q9BZZ2 1709 aa29.26■■■□□ 2.27
VAT1-208ENST00000590924 POGZQ7Z3K3 1410 aa29.26■■■□□ 2.27
VAT1-208ENST00000590924 CLIP1P30622 1438 aa29.25■■■□□ 2.27
VAT1-208ENST00000590924 SCAPERQ9BY12 1400 aa29.24■■■□□ 2.27
VAT1-208ENST00000590924 RIMS1Q86UR5 1692 aaKnown RBP29.24■■■□□ 2.27
VAT1-208ENST00000590924 ARID4BQ4LE39 1312 aaPredicted RBP29.23■■■□□ 2.27
VAT1-208ENST00000590924 CCDC18Q5T9S5 1454 aa29.23■■■□□ 2.27
VAT1-208ENST00000590924 CDC42BPBQ9Y5S2 1711 aa29.23■■■□□ 2.27
VAT1-208ENST00000590924 CASKIN1Q8WXD9 1431 aa29.22■■■□□ 2.27
VAT1-208ENST00000590924 YEATS2Q9ULM3 1422 aa29.22■■■□□ 2.27
VAT1-208ENST00000590924 EFCAB2Q5VUJ9 269 aa29.19■■■□□ 2.26
VAT1-208ENST00000590924 ARHGAP5Q13017 1502 aa29.18■■■□□ 2.26
VAT1-208ENST00000590924 PREX2Q70Z35 1606 aa29.17■■■□□ 2.26
VAT1-208ENST00000590924 FYCO1Q9BQS8 1478 aa29.16■■■□□ 2.26
VAT1-208ENST00000590924 FER1L4A9Z1Z3 1794 aa29.14■■■□□ 2.26
VAT1-208ENST00000590924 KDM5CP41229 1560 aa29.13■■■□□ 2.25
VAT1-208ENST00000590924 ZNF518AQ6AHZ1 1483 aa29.13■■■□□ 2.25
VAT1-208ENST00000590924 CDC42BPAQ5VT25 1732 aa29.12■■■□□ 2.25
VAT1-208ENST00000590924 ATP10AO60312 1499 aa29.08■■■□□ 2.25
VAT1-208ENST00000590924 C9orf84Q5VXU9 1444 aa29.07■■■□□ 2.24
VAT1-208ENST00000590924 ITSN2Q9NZM3 1697 aa29.06■■■□□ 2.24
VAT1-208ENST00000590924 ABCC1P33527 1531 aa29.04■■■□□ 2.24
VAT1-208ENST00000590924 LMTK3Q96Q04 1460 aa29.04■■■□□ 2.24
VAT1-208ENST00000590924 ARHGEF12Q9NZN5 1544 aa29.01■■■□□ 2.23
VAT1-208ENST00000590924 DIP2CQ9Y2E4 1556 aa29.01■■■□□ 2.23
VAT1-208ENST00000590924 REREQ9P2R6 1566 aa29■■■□□ 2.23
VAT1-208ENST00000590924 ABCA6Q8N139 1617 aa28.98■■■□□ 2.23
VAT1-208ENST00000590924 ILDR1Q86SU0 546 aaPredicted RBP28.98■■■□□ 2.23
VAT1-208ENST00000590924 AFAP1Q8N556 730 aa28.97■■■□□ 2.23
VAT1-208ENST00000590924 MLH3Q9UHC1 1453 aa28.97■■■□□ 2.23
VAT1-208ENST00000590924 MLECQ14165 292 aa28.94■■■□□ 2.22
VAT1-208ENST00000590924 KIDINS220Q9ULH0 1771 aa28.93■■■□□ 2.22
VAT1-208ENST00000590924 TRAPPC8Q9Y2L5 1435 aa28.92■■■□□ 2.22
VAT1-208ENST00000590924 SAMD9LQ8IVG5 1584 aa28.92■■■□□ 2.22
VAT1-208ENST00000590924 GPATCH8Q9UKJ3 1502 aaKnown RBP28.88■■■□□ 2.21
VAT1-208ENST00000590924 PREX1Q8TCU6 1659 aa28.87■■■□□ 2.21
VAT1-208ENST00000590924 AGLP35573 1532 aa28.85■■■□□ 2.21
VAT1-208ENST00000590924 SETD1BQ9UPS6 1966 aaKnown RBP28.85■■■□□ 2.21
VAT1-208ENST00000590924 MYT1LQ9UL68 1186 aa28.85■■■□□ 2.21
VAT1-208ENST00000590924 SYCP2Q9BX26 1530 aa28.84■■■□□ 2.21
VAT1-208ENST00000590924 PLPPR3Q6T4P5 718 aa28.83■■■□□ 2.21
VAT1-208ENST00000590924 CEP162Q5TB80 1403 aa28.8■■■□□ 2.2
VAT1-208ENST00000590924 MTUS2Q5JR59 1369 aa28.79■■■□□ 2.2
VAT1-208ENST00000590924 C3P01024 1663 aa28.79■■■□□ 2.2
VAT1-208ENST00000590924 EHBP1L1Q8N3D4 1523 aa28.79■■■□□ 2.2
VAT1-208ENST00000590924 PLEKHH2Q8IVE3 1493 aa28.77■■■□□ 2.2
VAT1-208ENST00000590924 HSPA2P54652 639 aa28.76■■■□□ 2.19
VAT1-208ENST00000590924 KIAA1107Q9UPP5 1409 aa28.76■■■□□ 2.19
VAT1-208ENST00000590924 CCNB3Q8WWL7 1395 aa28.75■■■□□ 2.19
VAT1-208ENST00000590924 TIAM1Q13009 1591 aa28.75■■■□□ 2.19
VAT1-208ENST00000590924 ZNF777Q9ULD5 760 aaPredicted RBP28.75■■■□□ 2.19
VAT1-208ENST00000590924 INO80Q9ULG1 1556 aaPredicted RBP28.75■■■□□ 2.19
VAT1-208ENST00000590924 ATP7AQ04656 1500 aa28.73■■■□□ 2.19
VAT1-208ENST00000590924 SUPT6HQ7KZ85 1726 aaKnown RBP28.72■■■□□ 2.19
VAT1-208ENST00000590924 CFDP1Q9UEE9 299 aaPredicted RBP28.71■■■□□ 2.19
VAT1-208ENST00000590924 CEBPAP49715 358 aaPredicted RBP28.7■■■□□ 2.18
VAT1-208ENST00000590924 MROH2AA6NES4 1674 aa28.69■■■□□ 2.18
VAT1-208ENST00000590924 SPAG9O60271 1321 aaKnown RBP28.68■■■□□ 2.18
VAT1-208ENST00000590924 PLXNC1O60486 1568 aa28.67■■■□□ 2.18
VAT1-208ENST00000590924 LOC105371045A0A1W2PR82 267 aa28.67■■■□□ 2.18
VAT1-208ENST00000590924 HNRNPMP52272 730 aaKnown RBP eCLIP28.67■■■□□ 2.18
VAT1-208ENST00000590924 ADGBQ8N7X0 1667 aa28.65■■■□□ 2.18
VAT1-208ENST00000590924 CNTLNQ9NXG0 1405 aa28.65■■■□□ 2.18
VAT1-208ENST00000590924 UHRF1BP1Q6BDS2 1440 aa28.64■■■□□ 2.18
VAT1-208ENST00000590924 STRCQ7RTU9 1775 aa28.64■■■□□ 2.18
VAT1-208ENST00000590924 FBXO41Q8TF61 875 aa28.63■■■□□ 2.17
VAT1-208ENST00000590924 ESF1Q9H501 851 aaKnown RBP28.61■■■□□ 2.17
VAT1-208ENST00000590924 A2MP01023 1474 aa28.59■■■□□ 2.17
VAT1-208ENST00000590924 MBD5Q9P267 1494 aa28.58■■■□□ 2.17
VAT1-208ENST00000590924 CLTCQ00610 1675 aaKnown RBP28.57■■■□□ 2.16
VAT1-208ENST00000590924 NCOA2Q15596 1464 aa28.55■■■□□ 2.16
VAT1-208ENST00000590924 ZNF644Q9H582 1327 aaPredicted RBP28.54■■■□□ 2.16
VAT1-208ENST00000590924 VPS8Q8N3P4 1428 aa28.52■■■□□ 2.16
VAT1-208ENST00000590924 RTEL1-TNFRSF6BF6WH68 1400 aa28.51■■■□□ 2.15
VAT1-208ENST00000590924 NPATQ14207 1427 aa28.51■■■□□ 2.15
VAT1-208ENST00000590924 CAMSAP2Q08AD1 1489 aa28.49■■■□□ 2.15
VAT1-208ENST00000590924 CCDC141Q6ZP82 1450 aa28.46■■■□□ 2.15
VAT1-208ENST00000590924 ZMYM3Q14202 1370 aa28.46■■■□□ 2.15
VAT1-208ENST00000590924 ZNF142P52746 1687 aaPredicted RBP28.45■■■□□ 2.14
VAT1-208ENST00000590924 DMRT2Q9Y5R5 561 aa28.44■■■□□ 2.14
VAT1-208ENST00000590924 LRRC9Q6ZRR7 1453 aa28.44■■■□□ 2.14
VAT1-208ENST00000590924 ARHGEF5Q12774 1597 aa28.44■■■□□ 2.14
VAT1-208ENST00000590924 MYO3AQ8NEV4 1616 aa28.42■■■□□ 2.14
VAT1-208ENST00000590924 MAP3K1Q13233 1512 aa28.42■■■□□ 2.14
VAT1-208ENST00000590924 CERKQ8TCT0 537 aa28.4■■■□□ 2.14
VAT1-208ENST00000590924 PTPRTO14522 1441 aa28.39■■■□□ 2.14
VAT1-208ENST00000590924 PPP6R1Q9UPN7 881 aa28.39■■■□□ 2.14
VAT1-208ENST00000590924 DHX29Q7Z478 1369 aaKnown RBP28.38■■■□□ 2.13
VAT1-208ENST00000590924 RSPH4AQ5TD94 716 aa28.38■■■□□ 2.13
VAT1-208ENST00000590924 GGT6Q6P531 493 aa28.38■■■□□ 2.13
VAT1-208ENST00000590924 NCOA1Q15788 1441 aa28.37■■■□□ 2.13
VAT1-208ENST00000590924 PTPRKQ15262 1439 aa28.36■■■□□ 2.13
VAT1-208ENST00000590924 CAMSAP1Q5T5Y3 1602 aa28.36■■■□□ 2.13
VAT1-208ENST00000590924 FAM135AQ9P2D6 1515 aa28.35■■■□□ 2.13
VAT1-208ENST00000590924 CEP170BQ9Y4F5 1589 aaPredicted RBP28.33■■■□□ 2.13
VAT1-208ENST00000590924 MAST1Q9Y2H9 1570 aa28.31■■■□□ 2.12
VAT1-208ENST00000590924 KDM5DQ9BY66 1539 aa28.29■■■□□ 2.12
VAT1-208ENST00000590924 PLA2R1Q13018 1463 aa28.27■■■□□ 2.12
VAT1-208ENST00000590924 KIF3BO15066 747 aa28.25■■■□□ 2.11
VAT1-208ENST00000590924 KANK4Q5T7N3 995 aaPredicted RBP28.25■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 60 ms