RNA–Protein interactions for RNA: ENST00000590260.5

DDX39A-212, Transcript of DExD-box helicase 39A, humanhuman

TSL 2

Gene DDX39A, Length 988 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39A-212ENST00000590260 ARHGAP5Q13017 1502 aa29.19■■■□□ 2.26
DDX39A-212ENST00000590260 SCAPERQ9BY12 1400 aa29.18■■■□□ 2.26
DDX39A-212ENST00000590260 ZMYM4Q5VZL5 1548 aa29.16■■■□□ 2.26
DDX39A-212ENST00000590260 EFCAB2Q5VUJ9 269 aa29.16■■■□□ 2.26
DDX39A-212ENST00000590260 POGZQ7Z3K3 1410 aa29.14■■■□□ 2.26
DDX39A-212ENST00000590260 GPATCH8Q9UKJ3 1502 aaKnown RBP29.14■■■□□ 2.25
DDX39A-212ENST00000590260 TIAM1Q13009 1591 aa29.13■■■□□ 2.25
DDX39A-212ENST00000590260 EHBP1L1Q8N3D4 1523 aa29.13■■■□□ 2.25
DDX39A-212ENST00000590260 MTUS2Q5JR59 1369 aa29.12■■■□□ 2.25
DDX39A-212ENST00000590260 ARHGEF40Q8TER5 1519 aa29.11■■■□□ 2.25
DDX39A-212ENST00000590260 ARHGEF12Q9NZN5 1544 aa29.11■■■□□ 2.25
DDX39A-212ENST00000590260 AEBP2Q6ZN18 517 aaPredicted RBP29.09■■■□□ 2.25
DDX39A-212ENST00000590260 ABCC1P33527 1531 aa29.09■■■□□ 2.25
DDX39A-212ENST00000590260 YEATS2Q9ULM3 1422 aa29.08■■■□□ 2.25
DDX39A-212ENST00000590260 SAMD9LQ8IVG5 1584 aa29.07■■■□□ 2.24
DDX39A-212ENST00000590260 SIGLEC1Q9BZZ2 1709 aa29.07■■■□□ 2.24
DDX39A-212ENST00000590260 ITSN2Q9NZM3 1697 aa29.05■■■□□ 2.24
DDX39A-212ENST00000590260 KDM5CP41229 1560 aa29.05■■■□□ 2.24
DDX39A-212ENST00000590260 ZFYVE16Q7Z3T8 1539 aa29.03■■■□□ 2.24
DDX39A-212ENST00000590260 TRAPPC8Q9Y2L5 1435 aa29.02■■■□□ 2.24
DDX39A-212ENST00000590260 MAGI2Q86UL8 1455 aa29.01■■■□□ 2.23
DDX39A-212ENST00000590260 ZNF518AQ6AHZ1 1483 aa29■■■□□ 2.23
DDX39A-212ENST00000590260 AFAP1Q8N556 730 aa29■■■□□ 2.23
DDX39A-212ENST00000590260 MAP3K1Q13233 1512 aa28.99■■■□□ 2.23
DDX39A-212ENST00000590260 LRRC9Q6ZRR7 1453 aa28.99■■■□□ 2.23
DDX39A-212ENST00000590260 CCNB3Q8WWL7 1395 aa28.99■■■□□ 2.23
DDX39A-212ENST00000590260 NCOA2Q15596 1464 aa28.97■■■□□ 2.23
DDX39A-212ENST00000590260 SUPT6HQ7KZ85 1726 aaKnown RBP28.97■■■□□ 2.23
DDX39A-212ENST00000590260 KANK4Q5T7N3 995 aaPredicted RBP28.96■■■□□ 2.23
DDX39A-212ENST00000590260 SYCP2Q9BX26 1530 aa28.95■■■□□ 2.23
DDX39A-212ENST00000590260 ADAMTSL3P82987 1691 aa28.95■■■□□ 2.22
DDX39A-212ENST00000590260 BCORL1Q5H9F3 1711 aa28.94■■■□□ 2.22
DDX39A-212ENST00000590260 HECW2Q9P2P5 1572 aa28.93■■■□□ 2.22
DDX39A-212ENST00000590260 ZNF777Q9ULD5 760 aaPredicted RBP28.92■■■□□ 2.22
DDX39A-212ENST00000590260 CFDP1Q9UEE9 299 aaPredicted RBP28.91■■■□□ 2.22
DDX39A-212ENST00000590260 DIP2CQ9Y2E4 1556 aa28.9■■■□□ 2.22
DDX39A-212ENST00000590260 ABCA6Q8N139 1617 aa28.9■■■□□ 2.22
DDX39A-212ENST00000590260 MLH3Q9UHC1 1453 aa28.9■■■□□ 2.22
DDX39A-212ENST00000590260 ZNF644Q9H582 1327 aaPredicted RBP28.9■■■□□ 2.22
DDX39A-212ENST00000590260 KIDINS220Q9ULH0 1771 aa28.88■■■□□ 2.21
DDX39A-212ENST00000590260 ATP10AO60312 1499 aa28.88■■■□□ 2.21
DDX39A-212ENST00000590260 KIAA1107Q9UPP5 1409 aa28.87■■■□□ 2.21
DDX39A-212ENST00000590260 HNRNPMP52272 730 aaKnown RBP eCLIP28.87■■■□□ 2.214e-15■■■■■ 28.5
DDX39A-212ENST00000590260 MBD5Q9P267 1494 aa28.84■■■□□ 2.21
DDX39A-212ENST00000590260 MADDQ8WXG6 1647 aa28.83■■■□□ 2.21
DDX39A-212ENST00000590260 C9orf84Q5VXU9 1444 aa28.83■■■□□ 2.21
DDX39A-212ENST00000590260 PLEKHH2Q8IVE3 1493 aa28.83■■■□□ 2.21
DDX39A-212ENST00000590260 ARID4BQ4LE39 1312 aaPredicted RBP28.81■■■□□ 2.2
DDX39A-212ENST00000590260 REREQ9P2R6 1566 aa28.79■■■□□ 2.2
DDX39A-212ENST00000590260 INO80Q9ULG1 1556 aaPredicted RBP28.79■■■□□ 2.2
DDX39A-212ENST00000590260 CAMSAP2Q08AD1 1489 aa28.78■■■□□ 2.2
DDX39A-212ENST00000590260 PTPRMP28827 1452 aa28.74■■■□□ 2.19
DDX39A-212ENST00000590260 ATP7AQ04656 1500 aa28.74■■■□□ 2.19
DDX39A-212ENST00000590260 RIMS1Q86UR5 1692 aaKnown RBP28.73■■■□□ 2.19
DDX39A-212ENST00000590260 SPAG9O60271 1321 aaKnown RBP28.7■■■□□ 2.19
DDX39A-212ENST00000590260 MYOM3Q5VTT5 1437 aa28.7■■■□□ 2.19
DDX39A-212ENST00000590260 MYT1LQ9UL68 1186 aa28.69■■■□□ 2.18
DDX39A-212ENST00000590260 AGLP35573 1532 aa28.69■■■□□ 2.18
DDX39A-212ENST00000590260 MLECQ14165 292 aa28.68■■■□□ 2.18
DDX39A-212ENST00000590260 FER1L4A9Z1Z3 1794 aa28.67■■■□□ 2.18
DDX39A-212ENST00000590260 ARHGEF5Q12774 1597 aa28.66■■■□□ 2.18
DDX39A-212ENST00000590260 PLXNC1O60486 1568 aa28.65■■■□□ 2.18
DDX39A-212ENST00000590260 CCDC141Q6ZP82 1450 aa28.65■■■□□ 2.18
DDX39A-212ENST00000590260 MIA2Q96PC5 1412 aa28.63■■■□□ 2.17
DDX39A-212ENST00000590260 APLP2Q06481 763 aa28.63■■■□□ 2.17
DDX39A-212ENST00000590260 RTEL1-TNFRSF6BF6WH68 1400 aa28.6■■■□□ 2.17
DDX39A-212ENST00000590260 ADGBQ8N7X0 1667 aa28.6■■■□□ 2.17
DDX39A-212ENST00000590260 A2MP01023 1474 aa28.58■■■□□ 2.17
DDX39A-212ENST00000590260 PTPN23Q9H3S7 1636 aa28.55■■■□□ 2.16
DDX39A-212ENST00000590260 FGD6Q6ZV73 1430 aa28.53■■■□□ 2.16
DDX39A-212ENST00000590260 MAST1Q9Y2H9 1570 aa28.53■■■□□ 2.16
DDX39A-212ENST00000590260 RSPH4AQ5TD94 716 aa28.52■■■□□ 2.16
DDX39A-212ENST00000590260 TCOF1Q13428 1488 aaKnown RBP28.52■■■□□ 2.16
DDX39A-212ENST00000590260 CROCC2H7BZ55 1655 aa28.46■■■□□ 2.15
DDX39A-212ENST00000590260 DHX29Q7Z478 1369 aaKnown RBP28.46■■■□□ 2.15
DDX39A-212ENST00000590260 CEBPAP49715 358 aaPredicted RBP28.45■■■□□ 2.14
DDX39A-212ENST00000590260 C3P01024 1663 aa28.45■■■□□ 2.14
DDX39A-212ENST00000590260 ABCC5O15440 1437 aa28.44■■■□□ 2.14
DDX39A-212ENST00000590260 PLPPR3Q6T4P5 718 aa28.44■■■□□ 2.14
DDX39A-212ENST00000590260 DNMT1P26358 1616 aaKnown RBP28.43■■■□□ 2.14
DDX39A-212ENST00000590260 LMTK3Q96Q04 1460 aa28.43■■■□□ 2.14
DDX39A-212ENST00000590260 TSPY4P0CV99 314 aa28.4■■■□□ 2.14
DDX39A-212ENST00000590260 TSPY10P0CW01 314 aa28.4■■■□□ 2.14
DDX39A-212ENST00000590260 DAPK1P53355 1430 aa28.39■■■□□ 2.14
DDX39A-212ENST00000590260 SHANK2Q9UPX8 1470 aa28.38■■■□□ 2.13
DDX39A-212ENST00000590260 MROH2AA6NES4 1674 aa28.38■■■□□ 2.13
DDX39A-212ENST00000590260 CLTCQ00610 1675 aaKnown RBP28.38■■■□□ 2.13
DDX39A-212ENST00000590260 PPARGC1BQ86YN6 1023 aaKnown RBP28.35■■■□□ 2.13
DDX39A-212ENST00000590260 CNTLNQ9NXG0 1405 aa28.35■■■□□ 2.13
DDX39A-212ENST00000590260 GGT6Q6P531 493 aa28.34■■■□□ 2.13
DDX39A-212ENST00000590260 PREX1Q8TCU6 1659 aa28.31■■■□□ 2.12
DDX39A-212ENST00000590260 KIF3BO15066 747 aa28.3■■■□□ 2.12
DDX39A-212ENST00000590260 RNF17Q9BXT8 1623 aaKnown RBP28.29■■■□□ 2.12
DDX39A-212ENST00000590260 ZMYM3Q14202 1370 aa28.28■■■□□ 2.12
DDX39A-212ENST00000590260 MROH1Q8NDA8 1641 aa28.28■■■□□ 2.12
DDX39A-212ENST00000590260 EIF2AK4Q9P2K8 1649 aaKnown RBP28.28■■■□□ 2.12
DDX39A-212ENST00000590260 DUOX2Q9NRD8 1548 aa28.27■■■□□ 2.12
DDX39A-212ENST00000590260 ESF1Q9H501 851 aaKnown RBP28.25■■■□□ 2.11
DDX39A-212ENST00000590260 HSPA2P54652 639 aa28.24■■■□□ 2.11
DDX39A-212ENST00000590260 KIF15Q9NS87 1388 aa28.24■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms