RNA–Protein interactions for RNA: ENST00000589285.1

ZNF540-207, Transcript of zinc finger protein 540, humanhuman

Gene ZNF540, Length 3,106 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-207ENST00000589285 UPF1Q92900 1129 aaKnown RBP eCLIP7.2□□□□□ -1.26
ZNF540-207ENST00000589285 C3orf67Q6ZVT6 689 aa7.19□□□□□ -1.26
ZNF540-207ENST00000589285 TMEM121BQ9BXQ6 578 aaPredicted RBP7.18□□□□□ -1.26
ZNF540-207ENST00000589285 KCNV2Q8TDN2 545 aa7.17□□□□□ -1.26
ZNF540-207ENST00000589285 KHSRPQ92945 711 aaKnown RBP eCLIP7.17□□□□□ -1.26
ZNF540-207ENST00000589285 CRISPLD2Q9H0B8 497 aa7.17□□□□□ -1.26
ZNF540-207ENST00000589285 SLAIN1Q8ND83 568 aa7.17□□□□□ -1.26
ZNF540-207ENST00000589285 G3V3G9 751 aa7.16□□□□□ -1.26
ZNF540-207ENST00000589285 EMILIN3Q9NT22 766 aa7.15□□□□□ -1.26
ZNF540-207ENST00000589285 PLPP6Q8IY26 295 aa7.14□□□□□ -1.27
ZNF540-207ENST00000589285 KIF3CO14782 793 aa7.13□□□□□ -1.27
ZNF540-207ENST00000589285 DDX27Q96GQ7 796 aaKnown RBP7.13□□□□□ -1.27
ZNF540-207ENST00000589285 GPHNQ9NQX3 736 aaPredicted RBP7.13□□□□□ -1.27
ZNF540-207ENST00000589285 RYDENQ9NUL5 291 aaKnown RBP7.13□□□□□ -1.27
ZNF540-207ENST00000589285 PPP1R15BQ5SWA1 713 aa7.12□□□□□ -1.27
ZNF540-207ENST00000589285 TMC2Q8TDI7 906 aa7.12□□□□□ -1.27
ZNF540-207ENST00000589285 L3MBTL3Q96JM7 780 aaPredicted RBP7.12□□□□□ -1.27
ZNF540-207ENST00000589285 EIF2AK3Q9NZJ5 1116 aaKnown RBP7.11□□□□□ -1.27
ZNF540-207ENST00000589285 DPYSL4O14531 572 aa7.11□□□□□ -1.27
ZNF540-207ENST00000589285 MARVELD3Q96A59 401 aa7.1□□□□□ -1.27
ZNF540-207ENST00000589285 SCUBE2Q9NQ36 999 aa7.09□□□□□ -1.27
ZNF540-207ENST00000589285 VSIG10Q8N0Z9 540 aa7.08□□□□□ -1.28
ZNF540-207ENST00000589285 WDR70Q9NW82 654 aa7.08□□□□□ -1.28
ZNF540-207ENST00000589285 SEMA3EO15041 775 aa7.07□□□□□ -1.28
ZNF540-207ENST00000589285 PDE4AP27815 886 aa7.07□□□□□ -1.28
ZNF540-207ENST00000589285 FOXK1P85037 733 aa7.07□□□□□ -1.28
ZNF540-207ENST00000589285 FAM163AQ96GL9 167 aaPredicted RBP7.07□□□□□ -1.28
ZNF540-207ENST00000589285 HOXB3P14651 431 aaPredicted RBP7.06□□□□□ -1.28
ZNF540-207ENST00000589285 E2F4Q16254 413 aa7.06□□□□□ -1.28
ZNF540-207ENST00000589285 ARSIQ5FYB1 569 aa7.05□□□□□ -1.28
ZNF540-207ENST00000589285 LCE2DQ5TA82 110 aaPredicted RBP7.05□□□□□ -1.28
ZNF540-207ENST00000589285 NUDT7P0C024 238 aa7.05□□□□□ -1.28
ZNF540-207ENST00000589285 MLLT3P42568 568 aaPredicted RBP7.04□□□□□ -1.28
ZNF540-207ENST00000589285 MFSD10Q14728 455 aa7.03□□□□□ -1.28
ZNF540-207ENST00000589285 NISCHQ9Y2I1 1504 aa7.03□□□□□ -1.28
ZNF540-207ENST00000589285 DDX12PQ92771 950 aa7.03□□□□□ -1.28
ZNF540-207ENST00000589285 MAMSTRQ6ZN01 415 aa7.01□□□□□ -1.29
ZNF540-207ENST00000589285 POTEMA6NI47 508 aa7□□□□□ -1.29
ZNF540-207ENST00000589285 PRKCSHP14314 528 aaPredicted RBP7□□□□□ -1.29
ZNF540-207ENST00000589285 GRXCR2A6NFK2 248 aa6.99□□□□□ -1.29
ZNF540-207ENST00000589285 ST18O60284 1047 aa6.99□□□□□ -1.29
ZNF540-207ENST00000589285 PRIM1P49642 420 aaKnown RBP6.99□□□□□ -1.29
ZNF540-207ENST00000589285 POTEGQ6S5H5 508 aa6.99□□□□□ -1.29
ZNF540-207ENST00000589285 CAMK2BQ13554 666 aa6.98□□□□□ -1.29
ZNF540-207ENST00000589285 MAP3K9P80192 1104 aa6.97□□□□□ -1.29
ZNF540-207ENST00000589285 GPR153Q6NV75 609 aa6.97□□□□□ -1.29
ZNF540-207ENST00000589285 OXER1Q8TDS5 423 aa6.97□□□□□ -1.29
ZNF540-207ENST00000589285 PCDHGA4Q9Y5G9 962 aa6.97□□□□□ -1.29
ZNF540-207ENST00000589285 ZNF710Q8N1W2 664 aa6.96□□□□□ -1.3
ZNF540-207ENST00000589285 POTEB3A0JP26 581 aa6.96□□□□□ -1.3
ZNF540-207ENST00000589285 POTEBQ6S5H4 581 aa6.96□□□□□ -1.3
ZNF540-207ENST00000589285 AXIN2Q9Y2T1 843 aa6.95□□□□□ -1.3
ZNF540-207ENST00000589285 RBM26Q5T8P6 1007 aaKnown RBP6.95□□□□□ -1.3
ZNF540-207ENST00000589285 RBM33Q96EV2 1170 aaKnown RBP6.94□□□□□ -1.3
ZNF540-207ENST00000589285 EVI5O60447 810 aa6.94□□□□□ -1.3
ZNF540-207ENST00000589285 LHX6Q9UPM6 363 aa6.93□□□□□ -1.3
ZNF540-207ENST00000589285 FAM205CA6NFA0 338 aa6.93□□□□□ -1.3
ZNF540-207ENST00000589285 PTCD2Q8WV60 388 aaKnown RBP6.92□□□□□ -1.3
ZNF540-207ENST00000589285 NBR1Q14596 966 aa6.91□□□□□ -1.3
ZNF540-207ENST00000589285 TSR1Q2NL82 804 aaKnown RBP6.91□□□□□ -1.3
ZNF540-207ENST00000589285 PLSCR2Q9NRY7 297 aa6.91□□□□□ -1.3
ZNF540-207ENST00000589285 CDHR5Q9HBB8 845 aa6.9□□□□□ -1.3
ZNF540-207ENST00000589285 KDM4FA0A1W2PPD8 638 aa6.9□□□□□ -1.31
ZNF540-207ENST00000589285 PDIA6Q15084 440 aa6.9□□□□□ -1.31
ZNF540-207ENST00000589285 ARHGEF1Q92888 912 aaKnown RBP6.9□□□□□ -1.31
ZNF540-207ENST00000589285 VARS2Q5ST30 1063 aaKnown RBP6.89□□□□□ -1.31
ZNF540-207ENST00000589285 PCDHGA10Q9Y5H3 936 aa6.89□□□□□ -1.31
ZNF540-207ENST00000589285 ZNF454Q8N9F8 522 aa6.89□□□□□ -1.31
ZNF540-207ENST00000589285 FAM161AQ3B820 660 aa6.88□□□□□ -1.31
ZNF540-207ENST00000589285 POTEEQ6S8J3 1075 aa6.88□□□□□ -1.31
ZNF540-207ENST00000589285 P3H3Q8IVL6 736 aa6.88□□□□□ -1.31
ZNF540-207ENST00000589285 EMP3P54852 163 aa6.87□□□□□ -1.31
ZNF540-207ENST00000589285 DOK7Q18PE1 504 aa6.87□□□□□ -1.31
ZNF540-207ENST00000589285 PSEN2P49810 448 aa6.87□□□□□ -1.31
ZNF540-207ENST00000589285 SLC34A2O95436 690 aa6.86□□□□□ -1.31
ZNF540-207ENST00000589285 FECHP22830 423 aa6.86□□□□□ -1.31
ZNF540-207ENST00000589285 ADAM33Q9BZ11 813 aa6.86□□□□□ -1.31
ZNF540-207ENST00000589285 NLRP7Q8WX94 980 aa6.85□□□□□ -1.31
ZNF540-207ENST00000589285 BCANQ96GW7 911 aa6.85□□□□□ -1.31
ZNF540-207ENST00000589285 TESPA1A2RU30 521 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-207ENST00000589285 TBC1D12O60347 775 aa6.85□□□□□ -1.31
ZNF540-207ENST00000589285 HOXB1P14653 301 aaPredicted RBP6.85□□□□□ -1.31
ZNF540-207ENST00000589285 OSBPP22059 807 aa6.85□□□□□ -1.31
ZNF540-207ENST00000589285 TPRNQ4KMQ1 711 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 LMOD2Q6P5Q4 547 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 HS3ST6Q96QI5 342 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 ERBB3P21860 1342 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 C3orf80F5H4A9 247 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 MAP3K7O43318 606 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 NUTM2FA1L443 756 aa6.83□□□□□ -1.32
ZNF540-207ENST00000589285 DHX30Q7L2E3 1194 aaKnown RBP eCLIP6.82□□□□□ -1.32
ZNF540-207ENST00000589285 RIMBP2O15034 1052 aa6.82□□□□□ -1.32
ZNF540-207ENST00000589285 ZNF316A6NFI3 1004 aaPredicted RBP6.81□□□□□ -1.32
ZNF540-207ENST00000589285 COL9A1P20849 921 aa6.81□□□□□ -1.32
ZNF540-207ENST00000589285 FOSBP53539 338 aa6.81□□□□□ -1.32
ZNF540-207ENST00000589285 PROX2Q3B8N5 592 aa6.81□□□□□ -1.32
ZNF540-207ENST00000589285 CDAN1Q8IWY9 1227 aa6.81□□□□□ -1.32
ZNF540-207ENST00000589285 ANO8Q9HCE9 1232 aaPredicted RBP6.81□□□□□ -1.32
ZNF540-207ENST00000589285 KCNK17Q96T54 332 aa6.8□□□□□ -1.32
ZNF540-207ENST00000589285 SMAPO00193 183 aa6.79□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms