RNA–Protein interactions for RNA: ENST00000586792.5

ZNF540-204, Transcript of zinc finger protein 540, humanhuman

TSL 3 BASIC

Gene ZNF540, Length 564 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-204ENST00000586792 VGFO15240 615 aaPredicted RBP12.93□□□□□ -0.34
ZNF540-204ENST00000586792 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.9□□□□□ -0.34
ZNF540-204ENST00000586792 ZFP91Q96JP5 570 aaPredicted RBP12.9□□□□□ -0.34
ZNF540-204ENST00000586792 MS4A4AQ96JQ5 239 aa12.89□□□□□ -0.35
ZNF540-204ENST00000586792 PHF8Q9UPP1 1060 aa12.89□□□□□ -0.35
ZNF540-204ENST00000586792 ARSIQ5FYB1 569 aa12.86□□□□□ -0.35
ZNF540-204ENST00000586792 TAOK2Q9UL54 1235 aa12.86□□□□□ -0.35
ZNF540-204ENST00000586792 NLRP6P59044 892 aa12.84□□□□□ -0.35
ZNF540-204ENST00000586792 RNF25Q96BH1 459 aaPredicted RBP12.84□□□□□ -0.35
ZNF540-204ENST00000586792 ZNF316A6NFI3 1004 aaPredicted RBP12.82□□□□□ -0.36
ZNF540-204ENST00000586792 ANKRD13DQ6ZTN6 518 aa12.82□□□□□ -0.36
ZNF540-204ENST00000586792 LSM11P83369 360 aaKnown RBP eCLIP12.75□□□□□ -0.37
ZNF540-204ENST00000586792 FBXO22Q8NEZ5 403 aa12.73□□□□□ -0.37
ZNF540-204ENST00000586792 KHSRPQ92945 711 aaKnown RBP eCLIP12.73□□□□□ -0.37
ZNF540-204ENST00000586792 BCL11BQ9C0K0 894 aaPredicted RBP12.73□□□□□ -0.37
ZNF540-204ENST00000586792 PBX2P40425 430 aa12.72□□□□□ -0.37
ZNF540-204ENST00000586792 STK24Q9Y6E0 443 aa12.7□□□□□ -0.38
ZNF540-204ENST00000586792 KIF3CO14782 793 aa12.67□□□□□ -0.38
ZNF540-204ENST00000586792 C2orf72A6NCS6 295 aa12.66□□□□□ -0.38
ZNF540-204ENST00000586792 SLC34A2O95436 690 aa12.65□□□□□ -0.38
ZNF540-204ENST00000586792 NUDT7P0C024 238 aa12.65□□□□□ -0.38
ZNF540-204ENST00000586792 MFRPQ9BY79 579 aa12.65□□□□□ -0.38
ZNF540-204ENST00000586792 STK25O00506 426 aa12.62□□□□□ -0.39
ZNF540-204ENST00000586792 LHX6Q9UPM6 363 aa12.61□□□□□ -0.39
ZNF540-204ENST00000586792 PCDHGA4Q9Y5G9 962 aa12.61□□□□□ -0.39
ZNF540-204ENST00000586792 TMC2Q8TDI7 906 aa12.6□□□□□ -0.39
ZNF540-204ENST00000586792 HCSTQ9UBK5 93 aa12.59□□□□□ -0.39
ZNF540-204ENST00000586792 PSDA5PKW4 1024 aaPredicted RBP12.58□□□□□ -0.4
ZNF540-204ENST00000586792 AXIN2Q9Y2T1 843 aa12.56□□□□□ -0.4
ZNF540-204ENST00000586792 PLA2G2EQ9NZK7 142 aa12.55□□□□□ -0.4
ZNF540-204ENST00000586792 POTEEQ6S8J3 1075 aa12.54□□□□□ -0.4
ZNF540-204ENST00000586792 ARHGAP33O14559 1287 aa12.53□□□□□ -0.4
ZNF540-204ENST00000586792 ECM2O94769 699 aaPredicted RBP12.51□□□□□ -0.41
ZNF540-204ENST00000586792 ADGRD1Q6QNK2 874 aa12.51□□□□□ -0.41
ZNF540-204ENST00000586792 TK2O00142 265 aa12.47□□□□□ -0.41
ZNF540-204ENST00000586792 PTCD2Q8WV60 388 aaKnown RBP12.43□□□□□ -0.42
ZNF540-204ENST00000586792 STAC3Q96MF2 364 aa12.42□□□□□ -0.42
ZNF540-204ENST00000586792 KDM4FA0A1W2PPD8 638 aa12.39□□□□□ -0.43
ZNF540-204ENST00000586792 HRO43593 1189 aa12.39□□□□□ -0.43
ZNF540-204ENST00000586792 TBC1D12O60347 775 aa12.39□□□□□ -0.43
ZNF540-204ENST00000586792 PPP4R3BQ5MIZ7 849 aa12.39□□□□□ -0.43
ZNF540-204ENST00000586792 FOXK1P85037 733 aa12.37□□□□□ -0.43
ZNF540-204ENST00000586792 KCNH8Q96L42 1107 aa12.37□□□□□ -0.43
ZNF540-204ENST00000586792 RGL2O15211 777 aa12.36□□□□□ -0.43
ZNF540-204ENST00000586792 PPP1R37O75864 691 aa12.36□□□□□ -0.43
ZNF540-204ENST00000586792 PSEN2P49810 448 aa12.35□□□□□ -0.43
ZNF540-204ENST00000586792 DMRTA1Q5VZB9 504 aa12.35□□□□□ -0.43
ZNF540-204ENST00000586792 PLPP6Q8IY26 295 aa12.34□□□□□ -0.43
ZNF540-204ENST00000586792 KCTD12Q96CX2 325 aaKnown RBP12.32□□□□□ -0.44
ZNF540-204ENST00000586792 GPHNQ9NQX3 736 aaPredicted RBP12.32□□□□□ -0.44
ZNF540-204ENST00000586792 PKD2Q13563 968 aa12.31□□□□□ -0.44
ZNF540-204ENST00000586792 KCNK17Q96T54 332 aa12.25□□□□□ -0.45
ZNF540-204ENST00000586792 DSG2Q14126 1118 aa12.24□□□□□ -0.45
ZNF540-204ENST00000586792 RGS20O76081 388 aa12.23□□□□□ -0.45
ZNF540-204ENST00000586792 VPS9D1Q9Y2B5 631 aa12.21□□□□□ -0.45
ZNF540-204ENST00000586792 SLC4A5Q9BY07 1137 aa12.2□□□□□ -0.46
ZNF540-204ENST00000586792 PTPN5P54829 565 aa12.19□□□□□ -0.46
ZNF540-204ENST00000586792 IFFO2Q5TF58 517 aa12.19□□□□□ -0.46
ZNF540-204ENST00000586792 HS6ST3Q8IZP7 471 aa12.17□□□□□ -0.46
ZNF540-204ENST00000586792 ZNF454Q8N9F8 522 aa12.16□□□□□ -0.46
ZNF540-204ENST00000586792 OXER1Q8TDS5 423 aa12.16□□□□□ -0.46
ZNF540-204ENST00000586792 BCL2L12Q9HB09 334 aa12.16□□□□□ -0.46
ZNF540-204ENST00000586792 GOLGA8CPA6NN73 597 aa12.14□□□□□ -0.47
ZNF540-204ENST00000586792 PTPREP23469 700 aa12.12□□□□□ -0.47
ZNF540-204ENST00000586792 RYDENQ9NUL5 291 aaKnown RBP12.12□□□□□ -0.47
ZNF540-204ENST00000586792 THSD4Q6ZMP0 1018 aa12.11□□□□□ -0.47
ZNF540-204ENST00000586792 UPF1Q92900 1129 aaKnown RBP eCLIP12.11□□□□□ -0.47
ZNF540-204ENST00000586792 BHMG1C9JSJ3 638 aaPredicted RBP12.1□□□□□ -0.47
ZNF540-204ENST00000586792 MRPL50Q8N5N7 158 aaKnown RBP12.09□□□□□ -0.47
ZNF540-204ENST00000586792 FOSBP53539 338 aa12.08□□□□□ -0.48
ZNF540-204ENST00000586792 WNT2BQ93097 391 aa12.08□□□□□ -0.48
ZNF540-204ENST00000586792 IRX2Q9BZI1 471 aaPredicted RBP12.08□□□□□ -0.48
ZNF540-204ENST00000586792 ZBED2Q9BTP6 218 aa12.06□□□□□ -0.48
ZNF540-204ENST00000586792 A0A0G2JS52 829 aa12.05□□□□□ -0.48
ZNF540-204ENST00000586792 PPP1R15BQ5SWA1 713 aa12.05□□□□□ -0.48
ZNF540-204ENST00000586792 NBPF3Q9H094 633 aa12.05□□□□□ -0.48
ZNF540-204ENST00000586792 CRISPLD2Q9H0B8 497 aa12.05□□□□□ -0.48
ZNF540-204ENST00000586792 CHGAP10645 457 aaKnown RBP12.04□□□□□ -0.48
ZNF540-204ENST00000586792 ANO8Q9HCE9 1232 aaPredicted RBP12.04□□□□□ -0.48
ZNF540-204ENST00000586792 JPH4Q96JJ6 628 aa12.03□□□□□ -0.48
ZNF540-204ENST00000586792 PDE4AP27815 886 aa12.02□□□□□ -0.49
ZNF540-204ENST00000586792 DNAJC5Q9H3Z4 198 aa12.02□□□□□ -0.49
ZNF540-204ENST00000586792 ZDHHC16Q969W1 377 aa12.01□□□□□ -0.49
ZNF540-204ENST00000586792 EVI5O60447 810 aa11.99□□□□□ -0.49
ZNF540-204ENST00000586792 ADAM33Q9BZ11 813 aa11.95□□□□□ -0.5
ZNF540-204ENST00000586792 MAP3K9P80192 1104 aa11.93□□□□□ -0.5
ZNF540-204ENST00000586792 NKX1-1Q15270 411 aaPredicted RBP11.93□□□□□ -0.5
ZNF540-204ENST00000586792 ANKK1Q8NFD2 765 aa11.92□□□□□ -0.5
ZNF540-204ENST00000586792 RABGEF1Q9UJ41 708 aa11.92□□□□□ -0.5
ZNF540-204ENST00000586792 NCKAP5LQ9HCH0 1330 aa11.91□□□□□ -0.5
ZNF540-204ENST00000586792 PPP1R3GB7ZBB8 358 aa11.91□□□□□ -0.5
ZNF540-204ENST00000586792 ITGBL1O95965 494 aaPredicted RBP11.89□□□□□ -0.51
ZNF540-204ENST00000586792 DDX27Q96GQ7 796 aaKnown RBP11.89□□□□□ -0.51
ZNF540-204ENST00000586792 NYAP1Q6ZVC0 841 aa11.88□□□□□ -0.51
ZNF540-204ENST00000586792 LAPTM4BQ86VI4 370 aa11.87□□□□□ -0.51
ZNF540-204ENST00000586792 LARP6Q9BRS8 491 aaKnown RBP11.87□□□□□ -0.51
ZNF540-204ENST00000586792 FBXW7Q969H0 707 aa11.85□□□□□ -0.51
ZNF540-204ENST00000586792 PCDHGA10Q9Y5H3 936 aa11.83□□□□□ -0.52
ZNF540-204ENST00000586792 SOWAHBA6NEL2 793 aa11.82□□□□□ -0.52
ZNF540-204ENST00000586792 ONECUT3O60422 494 aaPredicted RBP11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 67.3 ms