RNA–Protein interactions for RNA: ENST00000586457.1

CLIP3-203, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

TSL 1 (best)

Gene CLIP3, Length 433 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-203ENST00000586457 SCAPERQ9BY12 1400 aa17.16■□□□□ 0.34
CLIP3-203ENST00000586457 ADGRL1O94910 1474 aa17.16■□□□□ 0.34
CLIP3-203ENST00000586457 KDM4FA0A1W2PPD8 638 aa17.14■□□□□ 0.33
CLIP3-203ENST00000586457 CCNB3Q8WWL7 1395 aa17.13■□□□□ 0.33
CLIP3-203ENST00000586457 CFDP1Q9UEE9 299 aaPredicted RBP17.12■□□□□ 0.33
CLIP3-203ENST00000586457 VPS8Q8N3P4 1428 aa17.11■□□□□ 0.33
CLIP3-203ENST00000586457 AFAP1Q8N556 730 aa17.07■□□□□ 0.32
CLIP3-203ENST00000586457 MAGI2Q86UL8 1455 aa17.05■□□□□ 0.32
CLIP3-203ENST00000586457 POGZQ7Z3K3 1410 aa17.05■□□□□ 0.32
CLIP3-203ENST00000586457 EHBP1L1Q8N3D4 1523 aa17.05■□□□□ 0.32
CLIP3-203ENST00000586457 ZNF518AQ6AHZ1 1483 aa17.05■□□□□ 0.32
CLIP3-203ENST00000586457 RICTORQ6R327 1708 aa17.04■□□□□ 0.32
CLIP3-203ENST00000586457 CDC42BPBQ9Y5S2 1711 aa17.04■□□□□ 0.32
CLIP3-203ENST00000586457 PREX2Q70Z35 1606 aa17.03■□□□□ 0.32
CLIP3-203ENST00000586457 GPATCH8Q9UKJ3 1502 aaKnown RBP17.03■□□□□ 0.32
CLIP3-203ENST00000586457 FRMPD1Q5SYB0 1578 aa17.02■□□□□ 0.32
CLIP3-203ENST00000586457 ZFYVE16Q7Z3T8 1539 aa17.02■□□□□ 0.32
CLIP3-203ENST00000586457 HNRNPMP52272 730 aaKnown RBP eCLIP17.02■□□□□ 0.32
CLIP3-203ENST00000586457 CDC42BPAQ5VT25 1732 aa17.01■□□□□ 0.31
CLIP3-203ENST00000586457 MLECQ14165 292 aa17■□□□□ 0.31
CLIP3-203ENST00000586457 ZMYM4Q5VZL5 1548 aa17■□□□□ 0.31
CLIP3-203ENST00000586457 PLEKHH2Q8IVE3 1493 aa16.99■□□□□ 0.31
CLIP3-203ENST00000586457 TIAM1Q13009 1591 aa16.99■□□□□ 0.31
CLIP3-203ENST00000586457 SUPT6HQ7KZ85 1726 aaKnown RBP16.98■□□□□ 0.31
CLIP3-203ENST00000586457 SPAG9O60271 1321 aaKnown RBP16.97■□□□□ 0.31
CLIP3-203ENST00000586457 YEATS2Q9ULM3 1422 aa16.97■□□□□ 0.31
CLIP3-203ENST00000586457 ARHGEF40Q8TER5 1519 aa16.97■□□□□ 0.31
CLIP3-203ENST00000586457 ATP10AO60312 1499 aa16.97■□□□□ 0.31
CLIP3-203ENST00000586457 ESF1Q9H501 851 aaKnown RBP16.96■□□□□ 0.31
CLIP3-203ENST00000586457 LRRC9Q6ZRR7 1453 aa16.96■□□□□ 0.31
CLIP3-203ENST00000586457 ABCC1P33527 1531 aa16.96■□□□□ 0.3
CLIP3-203ENST00000586457 ITSN2Q9NZM3 1697 aa16.95■□□□□ 0.3
CLIP3-203ENST00000586457 NCOA2Q15596 1464 aa16.95■□□□□ 0.3
CLIP3-203ENST00000586457 KANK4Q5T7N3 995 aaPredicted RBP16.95■□□□□ 0.3
CLIP3-203ENST00000586457 TRAPPC8Q9Y2L5 1435 aa16.95■□□□□ 0.3
CLIP3-203ENST00000586457 PLPPR3Q6T4P5 718 aa16.94■□□□□ 0.3
CLIP3-203ENST00000586457 MAP3K1Q13233 1512 aa16.94■□□□□ 0.3
CLIP3-203ENST00000586457 C9orf84Q5VXU9 1444 aa16.94■□□□□ 0.3
CLIP3-203ENST00000586457 KIAA1107Q9UPP5 1409 aa16.94■□□□□ 0.3
CLIP3-203ENST00000586457 RSPH4AQ5TD94 716 aa16.93■□□□□ 0.3
CLIP3-203ENST00000586457 ZNF644Q9H582 1327 aaPredicted RBP16.93■□□□□ 0.3
CLIP3-203ENST00000586457 SAMD9LQ8IVG5 1584 aa16.92■□□□□ 0.3
CLIP3-203ENST00000586457 HECW2Q9P2P5 1572 aa16.92■□□□□ 0.3
CLIP3-203ENST00000586457 MLH3Q9UHC1 1453 aa16.92■□□□□ 0.3
CLIP3-203ENST00000586457 SYCP2Q9BX26 1530 aa16.91■□□□□ 0.3
CLIP3-203ENST00000586457 ARHGEF12Q9NZN5 1544 aa16.91■□□□□ 0.3
CLIP3-203ENST00000586457 TSPY4P0CV99 314 aa16.91■□□□□ 0.3
CLIP3-203ENST00000586457 TSPY10P0CW01 314 aa16.91■□□□□ 0.3
CLIP3-203ENST00000586457 KDM5CP41229 1560 aa16.9■□□□□ 0.3
CLIP3-203ENST00000586457 BCORL1Q5H9F3 1711 aa16.88■□□□□ 0.29
CLIP3-203ENST00000586457 PTPRMP28827 1452 aa16.86■□□□□ 0.29
CLIP3-203ENST00000586457 ADAMTSL3P82987 1691 aa16.85■□□□□ 0.29
CLIP3-203ENST00000586457 CAMSAP2Q08AD1 1489 aa16.84■□□□□ 0.29
CLIP3-203ENST00000586457 MADDQ8WXG6 1647 aa16.83■□□□□ 0.28
CLIP3-203ENST00000586457 DIP2CQ9Y2E4 1556 aa16.83■□□□□ 0.28
CLIP3-203ENST00000586457 ATP7AQ04656 1500 aa16.82■□□□□ 0.28
CLIP3-203ENST00000586457 MYOM3Q5VTT5 1437 aa16.82■□□□□ 0.28
CLIP3-203ENST00000586457 ABCA6Q8N139 1617 aa16.81■□□□□ 0.28
CLIP3-203ENST00000586457 MIA2Q96PC5 1412 aa16.81■□□□□ 0.28
CLIP3-203ENST00000586457 KIDINS220Q9ULH0 1771 aa16.81■□□□□ 0.28
CLIP3-203ENST00000586457 RIMS1Q86UR5 1692 aaKnown RBP16.81■□□□□ 0.28
CLIP3-203ENST00000586457 CCDC141Q6ZP82 1450 aa16.8■□□□□ 0.28
CLIP3-203ENST00000586457 GGT6Q6P531 493 aa16.8■□□□□ 0.28
CLIP3-203ENST00000586457 MBD5Q9P267 1494 aa16.8■□□□□ 0.28
CLIP3-203ENST00000586457 RTEL1-TNFRSF6BF6WH68 1400 aa16.79■□□□□ 0.28
CLIP3-203ENST00000586457 REREQ9P2R6 1566 aa16.78■□□□□ 0.28
CLIP3-203ENST00000586457 A2MP01023 1474 aa16.78■□□□□ 0.28
CLIP3-203ENST00000586457 FER1L4A9Z1Z3 1794 aa16.77■□□□□ 0.28
CLIP3-203ENST00000586457 AGLP35573 1532 aa16.76■□□□□ 0.27
CLIP3-203ENST00000586457 SIGLEC1Q9BZZ2 1709 aa16.76■□□□□ 0.27
CLIP3-203ENST00000586457 CEBPAP49715 358 aaPredicted RBP16.75■□□□□ 0.27
CLIP3-203ENST00000586457 FAM50AQ14320 339 aaKnown RBP16.75■□□□□ 0.27
CLIP3-203ENST00000586457 INO80Q9ULG1 1556 aaPredicted RBP16.75■□□□□ 0.27
CLIP3-203ENST00000586457 KIF3BO15066 747 aa16.74■□□□□ 0.27
CLIP3-203ENST00000586457 ARHGEF5Q12774 1597 aa16.73■□□□□ 0.27
CLIP3-203ENST00000586457 ADGBQ8N7X0 1667 aa16.73■□□□□ 0.27
CLIP3-203ENST00000586457 DHX29Q7Z478 1369 aaKnown RBP16.73■□□□□ 0.27
CLIP3-203ENST00000586457 CNTLNQ9NXG0 1405 aa16.72■□□□□ 0.27
CLIP3-203ENST00000586457 PPARGC1BQ86YN6 1023 aaKnown RBP16.72■□□□□ 0.27
CLIP3-203ENST00000586457 PPP6R1Q9UPN7 881 aa16.72■□□□□ 0.27
CLIP3-203ENST00000586457 FGD6Q6ZV73 1430 aa16.7■□□□□ 0.26
CLIP3-203ENST00000586457 PTPN23Q9H3S7 1636 aa16.7■□□□□ 0.26
CLIP3-203ENST00000586457 CHIC2Q9UKJ5 165 aa16.68■□□□□ 0.26
CLIP3-203ENST00000586457 WASHC2CQ9Y4E1 1318 aa16.68■□□□□ 0.26
CLIP3-203ENST00000586457 RRP7BPQ9NSQ0 103 aa16.67■□□□□ 0.26
CLIP3-203ENST00000586457 ZMYM3Q14202 1370 aa16.65■□□□□ 0.26
CLIP3-203ENST00000586457 PLXNC1O60486 1568 aa16.64■□□□□ 0.25
CLIP3-203ENST00000586457 HSPA2P54652 639 aa16.64■□□□□ 0.25
CLIP3-203ENST00000586457 ANKRD30AQ9BXX3 1397 aa16.63■□□□□ 0.25
CLIP3-203ENST00000586457 ABCC5O15440 1437 aa16.62■□□□□ 0.25
CLIP3-203ENST00000586457 DAPK1P53355 1430 aa16.62■□□□□ 0.25
CLIP3-203ENST00000586457 MAST1Q9Y2H9 1570 aa16.62■□□□□ 0.25
CLIP3-203ENST00000586457 UHRF1BP1Q6BDS2 1440 aa16.62■□□□□ 0.25
CLIP3-203ENST00000586457 TCOF1Q13428 1488 aaKnown RBP16.61■□□□□ 0.25
CLIP3-203ENST00000586457 ITGAEP38570 1179 aa16.61■□□□□ 0.25
CLIP3-203ENST00000586457 KIF15Q9NS87 1388 aa16.61■□□□□ 0.25
CLIP3-203ENST00000586457 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.6■□□□□ 0.25
CLIP3-203ENST00000586457 C3P01024 1663 aa16.59■□□□□ 0.25
CLIP3-203ENST00000586457 CLTCQ00610 1675 aaKnown RBP16.59■□□□□ 0.25
CLIP3-203ENST00000586457 LMTK3Q96Q04 1460 aa16.59■□□□□ 0.25
Retrieved 100 of 20,778 RNA–protein pairs in 13.4 ms