RNA–Protein interactions for RNA: ENST00000583344.1

SMCHD1-208, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 2

Gene SMCHD1, Length 738 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-208ENST00000583344 ZNF710Q8N1W2 664 aa12.8□□□□□ -0.36
SMCHD1-208ENST00000583344 FAM205CA6NFA0 338 aa12.75□□□□□ -0.37
SMCHD1-208ENST00000583344 NKX1-1Q15270 411 aaPredicted RBP12.75□□□□□ -0.37
SMCHD1-208ENST00000583344 POTEB3A0JP26 581 aa12.74□□□□□ -0.37
SMCHD1-208ENST00000583344 HOXB1P14653 301 aaPredicted RBP12.74□□□□□ -0.37
SMCHD1-208ENST00000583344 POTEBQ6S5H4 581 aa12.74□□□□□ -0.37
SMCHD1-208ENST00000583344 C2orf72A6NCS6 295 aa12.73□□□□□ -0.37
SMCHD1-208ENST00000583344 KIF3CO14782 793 aa12.72□□□□□ -0.37
SMCHD1-208ENST00000583344 RIMBP2O15034 1052 aa12.72□□□□□ -0.37
SMCHD1-208ENST00000583344 HS3ST6Q96QI5 342 aa12.72□□□□□ -0.37
SMCHD1-208ENST00000583344 DCAF8L2P0C7V8 631 aa12.7□□□□□ -0.38
SMCHD1-208ENST00000583344 DNAJC5Q9H3Z4 198 aa12.69□□□□□ -0.38
SMCHD1-208ENST00000583344 GPR153Q6NV75 609 aa12.66□□□□□ -0.38
SMCHD1-208ENST00000583344 TMC2Q8TDI7 906 aa12.66□□□□□ -0.38
SMCHD1-208ENST00000583344 ZSWIM6Q9HCJ5 1215 aa12.65□□□□□ -0.38
SMCHD1-208ENST00000583344 ERBB3P21860 1342 aa12.63□□□□□ -0.39
SMCHD1-208ENST00000583344 ARSIQ5FYB1 569 aa12.63□□□□□ -0.39
SMCHD1-208ENST00000583344 KHSRPQ92945 711 aaKnown RBP eCLIP12.62□□□□□ -0.397e-14■■■■■ 42.2
SMCHD1-208ENST00000583344 VARS2Q5ST30 1063 aaKnown RBP12.6□□□□□ -0.39
SMCHD1-208ENST00000583344 KRTAP3-3Q9BYR6 98 aa12.6□□□□□ -0.39
SMCHD1-208ENST00000583344 KRTAP3-2Q9BYR7 98 aa12.6□□□□□ -0.39
SMCHD1-208ENST00000583344 RYDENQ9NUL5 291 aaKnown RBP12.56□□□□□ -0.4
SMCHD1-208ENST00000583344 GTPBP6O43824 516 aaPredicted RBP12.54□□□□□ -0.4
SMCHD1-208ENST00000583344 SPNS2Q8IVW8 549 aa12.53□□□□□ -0.4
SMCHD1-208ENST00000583344 GPHNQ9NQX3 736 aaPredicted RBP12.53□□□□□ -0.4
SMCHD1-208ENST00000583344 PCDHGA4Q9Y5G9 962 aa12.53□□□□□ -0.4
SMCHD1-208ENST00000583344 NUDT7P0C024 238 aa12.52□□□□□ -0.41
SMCHD1-208ENST00000583344 SLC34A2O95436 690 aa12.51□□□□□ -0.41
SMCHD1-208ENST00000583344 FOXK1P85037 733 aa12.51□□□□□ -0.41
SMCHD1-208ENST00000583344 DSG2Q14126 1118 aa12.51□□□□□ -0.41
SMCHD1-208ENST00000583344 PLPP6Q8IY26 295 aa12.5□□□□□ -0.41
SMCHD1-208ENST00000583344 ZNF316A6NFI3 1004 aaPredicted RBP12.49□□□□□ -0.41
SMCHD1-208ENST00000583344 MMRN1Q13201 1228 aa12.47□□□□□ -0.41
SMCHD1-208ENST00000583344 RTN4Q9NQC3 1192 aaKnown RBP12.46□□□□□ -0.41
SMCHD1-208ENST00000583344 AMER1Q5JTC6 1135 aaPredicted RBP12.45□□□□□ -0.42
SMCHD1-208ENST00000583344 ZNF687Q8N1G0 1237 aa12.45□□□□□ -0.42
SMCHD1-208ENST00000583344 CRISPLD2Q9H0B8 497 aa12.45□□□□□ -0.42
SMCHD1-208ENST00000583344 LHX6Q9UPM6 363 aa12.44□□□□□ -0.42
SMCHD1-208ENST00000583344 NCKAP5LQ9HCH0 1330 aa12.43□□□□□ -0.42
SMCHD1-208ENST00000583344 PTCD2Q8WV60 388 aaKnown RBP12.42□□□□□ -0.42
SMCHD1-208ENST00000583344 PPP1R15BQ5SWA1 713 aa12.39□□□□□ -0.43
SMCHD1-208ENST00000583344 KDM4FA0A1W2PPD8 638 aa12.37□□□□□ -0.43
SMCHD1-208ENST00000583344 PDE4AP27815 886 aa12.36□□□□□ -0.43
SMCHD1-208ENST00000583344 UPF1Q92900 1129 aaKnown RBP eCLIP12.36□□□□□ -0.43
SMCHD1-208ENST00000583344 CADPS2Q86UW7 1296 aa12.35□□□□□ -0.43
SMCHD1-208ENST00000583344 LARP6Q9BRS8 491 aaKnown RBP12.34□□□□□ -0.43
SMCHD1-208ENST00000583344 BBXQ8WY36 941 aaPredicted RBP12.33□□□□□ -0.44
SMCHD1-208ENST00000583344 POTEEQ6S8J3 1075 aa12.32□□□□□ -0.44
SMCHD1-208ENST00000583344 OXER1Q8TDS5 423 aa12.32□□□□□ -0.44
SMCHD1-208ENST00000583344 TBC1D12O60347 775 aa12.31□□□□□ -0.44
SMCHD1-208ENST00000583344 AXIN2Q9Y2T1 843 aa12.31□□□□□ -0.44
SMCHD1-208ENST00000583344 ANKRD13DQ6ZTN6 518 aa12.3□□□□□ -0.44
SMCHD1-208ENST00000583344 DDX27Q96GQ7 796 aaKnown RBP12.3□□□□□ -0.44
SMCHD1-208ENST00000583344 LSM11P83369 360 aaKnown RBP eCLIP12.28□□□□□ -0.44
SMCHD1-208ENST00000583344 MFSD10Q14728 455 aa12.27□□□□□ -0.45
SMCHD1-208ENST00000583344 PBX2P40425 430 aa12.26□□□□□ -0.45
SMCHD1-208ENST00000583344 PSDA5PKW4 1024 aaPredicted RBP12.25□□□□□ -0.45
SMCHD1-208ENST00000583344 MYT1LQ9UL68 1186 aa12.22□□□□□ -0.45
SMCHD1-208ENST00000583344 PPP4R3BQ5MIZ7 849 aa12.21□□□□□ -0.45
SMCHD1-208ENST00000583344 RNF166Q96A37 237 aaPredicted RBP12.21□□□□□ -0.45
SMCHD1-208ENST00000583344 EMILIN3Q9NT22 766 aa12.21□□□□□ -0.45
SMCHD1-208ENST00000583344 SPRYD3Q8NCJ5 442 aa12.2□□□□□ -0.46
SMCHD1-208ENST00000583344 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.2□□□□□ -0.46
SMCHD1-208ENST00000583344 ARHGAP33O14559 1287 aa12.19□□□□□ -0.46
SMCHD1-208ENST00000583344 PSEN2P49810 448 aa12.19□□□□□ -0.46
SMCHD1-208ENST00000583344 EVI5O60447 810 aa12.17□□□□□ -0.46
SMCHD1-208ENST00000583344 ZNF454Q8N9F8 522 aa12.17□□□□□ -0.46
SMCHD1-208ENST00000583344 DMRTA1Q5VZB9 504 aa12.16□□□□□ -0.46
SMCHD1-208ENST00000583344 PTGER2P43116 358 aa12.15□□□□□ -0.46
SMCHD1-208ENST00000583344 MAP3K9P80192 1104 aa12.15□□□□□ -0.46
SMCHD1-208ENST00000583344 PAXIP1Q6ZW49 1069 aaPredicted RBP12.15□□□□□ -0.46
SMCHD1-208ENST00000583344 CFAP44Q96MT7 982 aa12.15□□□□□ -0.46
SMCHD1-208ENST00000583344 KCNK17Q96T54 332 aa12.14□□□□□ -0.47
SMCHD1-208ENST00000583344 ADGRD1Q6QNK2 874 aa12.13□□□□□ -0.47
SMCHD1-208ENST00000583344 FOSBP53539 338 aa12.12□□□□□ -0.47
SMCHD1-208ENST00000583344 ANO8Q9HCE9 1232 aaPredicted RBP12.12□□□□□ -0.47
SMCHD1-208ENST00000583344 CAMK2BQ13554 666 aa12.09□□□□□ -0.47
SMCHD1-208ENST00000583344 JPH4Q96JJ6 628 aa12.09□□□□□ -0.47
SMCHD1-208ENST00000583344 BCL2L12Q9HB09 334 aa12.07□□□□□ -0.48
SMCHD1-208ENST00000583344 TK2O00142 265 aa12.06□□□□□ -0.48
SMCHD1-208ENST00000583344 DPYSL4O14531 572 aa12.06□□□□□ -0.48
SMCHD1-208ENST00000583344 KCNH8Q96L42 1107 aa12.06□□□□□ -0.48
SMCHD1-208ENST00000583344 ADAM33Q9BZ11 813 aa12.05□□□□□ -0.48
SMCHD1-208ENST00000583344 ZDHHC16Q969W1 377 aa12.04□□□□□ -0.48
SMCHD1-208ENST00000583344 HRO43593 1189 aa12.03□□□□□ -0.48
SMCHD1-208ENST00000583344 PCDHGA10Q9Y5H3 936 aa12.02□□□□□ -0.49
SMCHD1-208ENST00000583344 PTPREP23469 700 aa12.01□□□□□ -0.49
SMCHD1-208ENST00000583344 VPS9D1Q9Y2B5 631 aa12□□□□□ -0.49
SMCHD1-208ENST00000583344 ZBED2Q9BTP6 218 aa11.96□□□□□ -0.49
SMCHD1-208ENST00000583344 PHF14O94880 888 aa11.95□□□□□ -0.5
SMCHD1-208ENST00000583344 TYW1BQ6NUM6 668 aa11.95□□□□□ -0.5
SMCHD1-208ENST00000583344 E2F4Q16254 413 aa11.93□□□□□ -0.5
SMCHD1-208ENST00000583344 DDX12PQ92771 950 aa11.93□□□□□ -0.5
SMCHD1-208ENST00000583344 STAC3Q96MF2 364 aa11.93□□□□□ -0.5
SMCHD1-208ENST00000583344 SLC4A5Q9BY07 1137 aa11.93□□□□□ -0.5
SMCHD1-208ENST00000583344 FBXW7Q969H0 707 aa11.92□□□□□ -0.5
SMCHD1-208ENST00000583344 KCTD12Q96CX2 325 aaKnown RBP11.92□□□□□ -0.5
SMCHD1-208ENST00000583344 WDR70Q9NW82 654 aa11.92□□□□□ -0.5
SMCHD1-208ENST00000583344 COL9A1P20849 921 aa11.91□□□□□ -0.5
SMCHD1-208ENST00000583344 PDIA6Q15084 440 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms