RNA–Protein interactions for RNA: ENST00000580419.5

SMARCE1-216, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily e, member 1, humanhuman

TSL 1 (best) BASIC

Gene SMARCE1, Length 1,228 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMARCE1-216ENST00000580419 SCAPERQ9BY12 1400 aa23.6■■□□□ 1.37
SMARCE1-216ENST00000580419 ATP1B4Q9UN42 357 aaPredicted RBP23.6■■□□□ 1.37
SMARCE1-216ENST00000580419 PCF11O94913 1555 aaKnown RBP23.6■■□□□ 1.37
SMARCE1-216ENST00000580419 ZFYVE16Q7Z3T8 1539 aa23.59■■□□□ 1.37
SMARCE1-216ENST00000580419 HECW2Q9P2P5 1572 aa23.58■■□□□ 1.37
SMARCE1-216ENST00000580419 PTPRMP28827 1452 aa23.58■■□□□ 1.37
SMARCE1-216ENST00000580419 ZNF518AQ6AHZ1 1483 aa23.56■■□□□ 1.36
SMARCE1-216ENST00000580419 KDM5CP41229 1560 aa23.54■■□□□ 1.36
SMARCE1-216ENST00000580419 CDC42BPBQ9Y5S2 1711 aa23.53■■□□□ 1.36
SMARCE1-216ENST00000580419 PREX2Q70Z35 1606 aa23.52■■□□□ 1.36
SMARCE1-216ENST00000580419 ARHGAP5Q13017 1502 aa23.52■■□□□ 1.36
SMARCE1-216ENST00000580419 YEATS2Q9ULM3 1422 aa23.51■■□□□ 1.35
SMARCE1-216ENST00000580419 MADDQ8WXG6 1647 aa23.51■■□□□ 1.35
SMARCE1-216ENST00000580419 ATP10AO60312 1499 aa23.5■■□□□ 1.35
SMARCE1-216ENST00000580419 ARID4BQ4LE39 1312 aaPredicted RBP23.5■■□□□ 1.35
SMARCE1-216ENST00000580419 MLH3Q9UHC1 1453 aa23.47■■□□□ 1.35
SMARCE1-216ENST00000580419 REREQ9P2R6 1566 aa23.47■■□□□ 1.35
SMARCE1-216ENST00000580419 C9orf84Q5VXU9 1444 aa23.46■■□□□ 1.35
SMARCE1-216ENST00000580419 CDC42BPAQ5VT25 1732 aa23.45■■□□□ 1.34
SMARCE1-216ENST00000580419 SIGLEC1Q9BZZ2 1709 aa23.44■■□□□ 1.34
SMARCE1-216ENST00000580419 ABCC1P33527 1531 aa23.43■■□□□ 1.34
SMARCE1-216ENST00000580419 ARHGEF12Q9NZN5 1544 aa23.41■■□□□ 1.34
SMARCE1-216ENST00000580419 RIMS1Q86UR5 1692 aaKnown RBP23.4■■□□□ 1.34
SMARCE1-216ENST00000580419 ITSN2Q9NZM3 1697 aa23.39■■□□□ 1.34
SMARCE1-216ENST00000580419 AFAP1Q8N556 730 aa23.38■■□□□ 1.33
SMARCE1-216ENST00000580419 GPATCH8Q9UKJ3 1502 aaKnown RBP23.38■■□□□ 1.33
SMARCE1-216ENST00000580419 AGLP35573 1532 aa23.37■■□□□ 1.33
SMARCE1-216ENST00000580419 FER1L4A9Z1Z3 1794 aa23.37■■□□□ 1.33
SMARCE1-216ENST00000580419 KIAA1107Q9UPP5 1409 aa23.36■■□□□ 1.33
SMARCE1-216ENST00000580419 PLEKHH2Q8IVE3 1493 aa23.36■■□□□ 1.33
SMARCE1-216ENST00000580419 DIP2CQ9Y2E4 1556 aa23.35■■□□□ 1.33
SMARCE1-216ENST00000580419 CEP162Q5TB80 1403 aa23.34■■□□□ 1.33
SMARCE1-216ENST00000580419 LMTK3Q96Q04 1460 aa23.34■■□□□ 1.33
SMARCE1-216ENST00000580419 TRAPPC8Q9Y2L5 1435 aa23.33■■□□□ 1.33
SMARCE1-216ENST00000580419 SETD1BQ9UPS6 1966 aaKnown RBP23.33■■□□□ 1.33
SMARCE1-216ENST00000580419 MTUS2Q5JR59 1369 aa23.31■■□□□ 1.32
SMARCE1-216ENST00000580419 ABCA6Q8N139 1617 aa23.3■■□□□ 1.32
SMARCE1-216ENST00000580419 KIDINS220Q9ULH0 1771 aa23.3■■□□□ 1.32
SMARCE1-216ENST00000580419 SAMD9LQ8IVG5 1584 aa23.3■■□□□ 1.32
SMARCE1-216ENST00000580419 EHBP1L1Q8N3D4 1523 aa23.29■■□□□ 1.32
SMARCE1-216ENST00000580419 CCNB3Q8WWL7 1395 aa23.27■■□□□ 1.31
SMARCE1-216ENST00000580419 CFDP1Q9UEE9 299 aaPredicted RBP23.25■■□□□ 1.31
SMARCE1-216ENST00000580419 SYCP2Q9BX26 1530 aa23.23■■□□□ 1.31
SMARCE1-216ENST00000580419 MLECQ14165 292 aa23.21■■□□□ 1.31
SMARCE1-216ENST00000580419 TIAM1Q13009 1591 aa23.21■■□□□ 1.31
SMARCE1-216ENST00000580419 CNTLNQ9NXG0 1405 aa23.2■■□□□ 1.3
SMARCE1-216ENST00000580419 PREX1Q8TCU6 1659 aa23.19■■□□□ 1.3
SMARCE1-216ENST00000580419 INO80Q9ULG1 1556 aaPredicted RBP23.19■■□□□ 1.3
SMARCE1-216ENST00000580419 SPAG9O60271 1321 aaKnown RBP23.19■■□□□ 1.3
SMARCE1-216ENST00000580419 MYT1LQ9UL68 1186 aa23.19■■□□□ 1.3
SMARCE1-216ENST00000580419 ATP7AQ04656 1500 aa23.18■■□□□ 1.3
SMARCE1-216ENST00000580419 MAP3K1Q13233 1512 aa23.17■■□□□ 1.3
SMARCE1-216ENST00000580419 PLXNC1O60486 1568 aa23.16■■□□□ 1.3
SMARCE1-216ENST00000580419 ZNF777Q9ULD5 760 aaPredicted RBP23.16■■□□□ 1.3
SMARCE1-216ENST00000580419 SUPT6HQ7KZ85 1726 aaKnown RBP23.16■■□□□ 1.3
SMARCE1-216ENST00000580419 RTEL1-TNFRSF6BF6WH68 1400 aa23.16■■□□□ 1.3
SMARCE1-216ENST00000580419 VPS8Q8N3P4 1428 aa23.16■■□□□ 1.3
SMARCE1-216ENST00000580419 MBD5Q9P267 1494 aa23.15■■□□□ 1.3
SMARCE1-216ENST00000580419 MROH2AA6NES4 1674 aa23.14■■□□□ 1.29
SMARCE1-216ENST00000580419 HNRNPMP52272 730 aaKnown RBP eCLIP23.14■■□□□ 1.29
SMARCE1-216ENST00000580419 RSPH4AQ5TD94 716 aa23.14■■□□□ 1.29
SMARCE1-216ENST00000580419 ILDR1Q86SU0 546 aaPredicted RBP23.14■■□□□ 1.29
SMARCE1-216ENST00000580419 PPP6R1Q9UPN7 881 aa23.13■■□□□ 1.29
SMARCE1-216ENST00000580419 C3P01024 1663 aa23.12■■□□□ 1.29
SMARCE1-216ENST00000580419 ADGBQ8N7X0 1667 aa23.12■■□□□ 1.29
SMARCE1-216ENST00000580419 NCOA2Q15596 1464 aa23.11■■□□□ 1.29
SMARCE1-216ENST00000580419 A2MP01023 1474 aa23.1■■□□□ 1.29
SMARCE1-216ENST00000580419 ESF1Q9H501 851 aaKnown RBP23.09■■□□□ 1.29
SMARCE1-216ENST00000580419 UHRF1BP1Q6BDS2 1440 aa23.08■■□□□ 1.29
SMARCE1-216ENST00000580419 NPATQ14207 1427 aa23.08■■□□□ 1.28
SMARCE1-216ENST00000580419 LRRC9Q6ZRR7 1453 aa23.05■■□□□ 1.28
SMARCE1-216ENST00000580419 CEBPAP49715 358 aaPredicted RBP23.04■■□□□ 1.28
SMARCE1-216ENST00000580419 HSPA2P54652 639 aa23.04■■□□□ 1.28
SMARCE1-216ENST00000580419 ARHGEF5Q12774 1597 aa23.04■■□□□ 1.28
SMARCE1-216ENST00000580419 FAM135AQ9P2D6 1515 aa23.03■■□□□ 1.28
SMARCE1-216ENST00000580419 CCDC141Q6ZP82 1450 aa23.03■■□□□ 1.28
SMARCE1-216ENST00000580419 ZNF644Q9H582 1327 aaPredicted RBP23.03■■□□□ 1.28
SMARCE1-216ENST00000580419 LOC105371045A0A1W2PR82 267 aa23.02■■□□□ 1.28
SMARCE1-216ENST00000580419 DMRT2Q9Y5R5 561 aa23.02■■□□□ 1.28
SMARCE1-216ENST00000580419 CAMSAP2Q08AD1 1489 aa23.01■■□□□ 1.27
SMARCE1-216ENST00000580419 FBXO41Q8TF61 875 aa23.01■■□□□ 1.27
SMARCE1-216ENST00000580419 ZMYM3Q14202 1370 aa23■■□□□ 1.27
SMARCE1-216ENST00000580419 DHX29Q7Z478 1369 aaKnown RBP23■■□□□ 1.27
SMARCE1-216ENST00000580419 PLPPR3Q6T4P5 718 aa22.98■■□□□ 1.27
SMARCE1-216ENST00000580419 STRCQ7RTU9 1775 aa22.98■■□□□ 1.27
SMARCE1-216ENST00000580419 MIA2Q96PC5 1412 aa22.98■■□□□ 1.27
SMARCE1-216ENST00000580419 PTPRTO14522 1441 aa22.93■■□□□ 1.26
SMARCE1-216ENST00000580419 CLTCQ00610 1675 aaKnown RBP22.93■■□□□ 1.26
SMARCE1-216ENST00000580419 MAST1Q9Y2H9 1570 aa22.93■■□□□ 1.26
SMARCE1-216ENST00000580419 PTPRKQ15262 1439 aa22.91■■□□□ 1.26
SMARCE1-216ENST00000580419 MYOM3Q5VTT5 1437 aa22.91■■□□□ 1.26
SMARCE1-216ENST00000580419 TSPY4P0CV99 314 aa22.9■■□□□ 1.26
SMARCE1-216ENST00000580419 TSPY10P0CW01 314 aa22.9■■□□□ 1.26
SMARCE1-216ENST00000580419 ZNF142P52746 1687 aaPredicted RBP22.9■■□□□ 1.26
SMARCE1-216ENST00000580419 GGT6Q6P531 493 aa22.88■■□□□ 1.25
SMARCE1-216ENST00000580419 NCOA1Q15788 1441 aa22.88■■□□□ 1.25
SMARCE1-216ENST00000580419 KANK4Q5T7N3 995 aaPredicted RBP22.86■■□□□ 1.25
SMARCE1-216ENST00000580419 PLA2R1Q13018 1463 aa22.85■■□□□ 1.25
SMARCE1-216ENST00000580419 KDM5DQ9BY66 1539 aa22.84■■□□□ 1.25
SMARCE1-216ENST00000580419 CERKQ8TCT0 537 aa22.83■■□□□ 1.25
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms