RNA–Protein interactions for RNA: ENST00000580073.1

TRAF4-214, Transcript of TNF receptor associated factor 4, humanhuman

TSL 3

Gene TRAF4, Length 449 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF4-214ENST00000580073 PLCH2O75038 1416 aa22.06■■□□□ 1.12
TRAF4-214ENST00000580073 CLIP1P30622 1438 aa22.06■■□□□ 1.12
TRAF4-214ENST00000580073 LRRIQ1Q96JM4 1722 aa22.04■■□□□ 1.12
TRAF4-214ENST00000580073 SIGLEC1Q9BZZ2 1709 aa22■■□□□ 1.11
TRAF4-214ENST00000580073 TROQ12816 1431 aaPredicted RBP21.99■■□□□ 1.11
TRAF4-214ENST00000580073 SCAPERQ9BY12 1400 aa21.99■■□□□ 1.11
TRAF4-214ENST00000580073 ZNF518AQ6AHZ1 1483 aa21.99■■□□□ 1.11
TRAF4-214ENST00000580073 LMTK3Q96Q04 1460 aa21.99■■□□□ 1.11
TRAF4-214ENST00000580073 ARHGAP5Q13017 1502 aa21.99■■□□□ 1.11
TRAF4-214ENST00000580073 CCDC18Q5T9S5 1454 aa21.98■■□□□ 1.11
TRAF4-214ENST00000580073 C9orf84Q5VXU9 1444 aa21.97■■□□□ 1.11
TRAF4-214ENST00000580073 ATP1B4Q9UN42 357 aaPredicted RBP21.97■■□□□ 1.11
TRAF4-214ENST00000580073 PREX2Q70Z35 1606 aa21.97■■□□□ 1.11
TRAF4-214ENST00000580073 YEATS2Q9ULM3 1422 aa21.97■■□□□ 1.11
TRAF4-214ENST00000580073 KDM5CP41229 1560 aa21.96■■□□□ 1.11
TRAF4-214ENST00000580073 CDC42BPBQ9Y5S2 1711 aa21.95■■□□□ 1.1
TRAF4-214ENST00000580073 EFCAB2Q5VUJ9 269 aa21.95■■□□□ 1.1
TRAF4-214ENST00000580073 PREX1Q8TCU6 1659 aa21.94■■□□□ 1.1
TRAF4-214ENST00000580073 ATP10AO60312 1499 aa21.93■■□□□ 1.1
TRAF4-214ENST00000580073 ARHGEF12Q9NZN5 1544 aa21.91■■□□□ 1.1
TRAF4-214ENST00000580073 ITSN2Q9NZM3 1697 aa21.91■■□□□ 1.1
TRAF4-214ENST00000580073 REREQ9P2R6 1566 aa21.91■■□□□ 1.1
TRAF4-214ENST00000580073 EHMT2Q96KQ7 1210 aa21.9■■□□□ 1.1
TRAF4-214ENST00000580073 CDC42BPAQ5VT25 1732 aa21.88■■□□□ 1.09
TRAF4-214ENST00000580073 CASKIN1Q8WXD9 1431 aa21.88■■□□□ 1.09
TRAF4-214ENST00000580073 FYCO1Q9BQS8 1478 aa21.87■■□□□ 1.09
TRAF4-214ENST00000580073 DIP2CQ9Y2E4 1556 aa21.87■■□□□ 1.09
TRAF4-214ENST00000580073 ABCC1P33527 1531 aa21.86■■□□□ 1.09
TRAF4-214ENST00000580073 ABCA6Q8N139 1617 aa21.84■■□□□ 1.09
TRAF4-214ENST00000580073 FBXO41Q8TF61 875 aa21.84■■□□□ 1.09
TRAF4-214ENST00000580073 SETD1BQ9UPS6 1966 aaKnown RBP21.83■■□□□ 1.08
TRAF4-214ENST00000580073 MLH3Q9UHC1 1453 aa21.8■■□□□ 1.08
TRAF4-214ENST00000580073 MLECQ14165 292 aa21.8■■□□□ 1.08
TRAF4-214ENST00000580073 MYT1LQ9UL68 1186 aa21.78■■□□□ 1.08
TRAF4-214ENST00000580073 AGLP35573 1532 aa21.77■■□□□ 1.08
TRAF4-214ENST00000580073 PLPPR3Q6T4P5 718 aa21.77■■□□□ 1.08
TRAF4-214ENST00000580073 C3P01024 1663 aa21.76■■□□□ 1.07
TRAF4-214ENST00000580073 KIDINS220Q9ULH0 1771 aa21.76■■□□□ 1.07
TRAF4-214ENST00000580073 MROH2AA6NES4 1674 aa21.72■■□□□ 1.07
TRAF4-214ENST00000580073 UHRF1BP1Q6BDS2 1440 aa21.72■■□□□ 1.07
TRAF4-214ENST00000580073 SAMD9LQ8IVG5 1584 aa21.7■■□□□ 1.06
TRAF4-214ENST00000580073 HSPA2P54652 639 aa21.7■■□□□ 1.06
TRAF4-214ENST00000580073 AFAP1Q8N556 730 aa21.7■■□□□ 1.06
TRAF4-214ENST00000580073 SYCP2Q9BX26 1530 aa21.69■■□□□ 1.06
TRAF4-214ENST00000580073 ESF1Q9H501 851 aaKnown RBP21.68■■□□□ 1.06
TRAF4-214ENST00000580073 CNTLNQ9NXG0 1405 aa21.68■■□□□ 1.06
TRAF4-214ENST00000580073 TRAPPC8Q9Y2L5 1435 aa21.68■■□□□ 1.06
TRAF4-214ENST00000580073 PLEKHH2Q8IVE3 1493 aa21.68■■□□□ 1.06
TRAF4-214ENST00000580073 STRCQ7RTU9 1775 aa21.66■■□□□ 1.06
TRAF4-214ENST00000580073 INO80Q9ULG1 1556 aaPredicted RBP21.65■■□□□ 1.06
TRAF4-214ENST00000580073 SUPT6HQ7KZ85 1726 aaKnown RBP21.64■■□□□ 1.06
TRAF4-214ENST00000580073 ADGBQ8N7X0 1667 aa21.64■■□□□ 1.05
TRAF4-214ENST00000580073 ATP7AQ04656 1500 aa21.64■■□□□ 1.05
TRAF4-214ENST00000580073 EHBP1L1Q8N3D4 1523 aa21.62■■□□□ 1.05
TRAF4-214ENST00000580073 DMRT2Q9Y5R5 561 aa21.62■■□□□ 1.05
TRAF4-214ENST00000580073 GPATCH8Q9UKJ3 1502 aaKnown RBP21.61■■□□□ 1.05
TRAF4-214ENST00000580073 KIAA1107Q9UPP5 1409 aa21.6■■□□□ 1.05
TRAF4-214ENST00000580073 PLXNC1O60486 1568 aa21.59■■□□□ 1.05
TRAF4-214ENST00000580073 MTUS2Q5JR59 1369 aa21.59■■□□□ 1.05
TRAF4-214ENST00000580073 CCNB3Q8WWL7 1395 aa21.58■■□□□ 1.04
TRAF4-214ENST00000580073 CEBPAP49715 358 aaPredicted RBP21.57■■□□□ 1.04
TRAF4-214ENST00000580073 ZNF142P52746 1687 aaPredicted RBP21.56■■□□□ 1.04
TRAF4-214ENST00000580073 CLTCQ00610 1675 aaKnown RBP21.56■■□□□ 1.04
TRAF4-214ENST00000580073 ZNF777Q9ULD5 760 aaPredicted RBP21.56■■□□□ 1.04
TRAF4-214ENST00000580073 TIAM1Q13009 1591 aa21.56■■□□□ 1.04
TRAF4-214ENST00000580073 SPAG9O60271 1321 aaKnown RBP21.55■■□□□ 1.04
TRAF4-214ENST00000580073 NPATQ14207 1427 aa21.55■■□□□ 1.04
TRAF4-214ENST00000580073 CERKQ8TCT0 537 aa21.55■■□□□ 1.04
TRAF4-214ENST00000580073 MYO3AQ8NEV4 1616 aa21.52■■□□□ 1.04
TRAF4-214ENST00000580073 CFDP1Q9UEE9 299 aaPredicted RBP21.52■■□□□ 1.04
TRAF4-214ENST00000580073 PTPRTO14522 1441 aa21.52■■□□□ 1.04
TRAF4-214ENST00000580073 A2MP01023 1474 aa21.52■■□□□ 1.03
TRAF4-214ENST00000580073 CEP162Q5TB80 1403 aa21.47■■□□□ 1.03
TRAF4-214ENST00000580073 NCOA1Q15788 1441 aa21.46■■□□□ 1.03
TRAF4-214ENST00000580073 CAMSAP1Q5T5Y3 1602 aa21.46■■□□□ 1.03
TRAF4-214ENST00000580073 FAM135AQ9P2D6 1515 aa21.45■■□□□ 1.02
TRAF4-214ENST00000580073 HNRNPMP52272 730 aaKnown RBP eCLIP21.45■■□□□ 1.02
TRAF4-214ENST00000580073 IQSEC2Q5JU85 1478 aa21.45■■□□□ 1.02
TRAF4-214ENST00000580073 CEP170BQ9Y4F5 1589 aaPredicted RBP21.44■■□□□ 1.02
TRAF4-214ENST00000580073 RTEL1-TNFRSF6BF6WH68 1400 aa21.42■■□□□ 1.02
TRAF4-214ENST00000580073 ZMYM3Q14202 1370 aa21.42■■□□□ 1.02
TRAF4-214ENST00000580073 PLA2R1Q13018 1463 aa21.4■■□□□ 1.02
TRAF4-214ENST00000580073 CCDC141Q6ZP82 1450 aa21.4■■□□□ 1.02
TRAF4-214ENST00000580073 PPP6R1Q9UPN7 881 aa21.4■■□□□ 1.02
TRAF4-214ENST00000580073 MBD5Q9P267 1494 aa21.39■■□□□ 1.01
TRAF4-214ENST00000580073 POLR1AO95602 1720 aaPredicted RBP21.38■■□□□ 1.01
TRAF4-214ENST00000580073 CAMSAP2Q08AD1 1489 aa21.37■■□□□ 1.01
TRAF4-214ENST00000580073 LTBP4Q8N2S1 1624 aa21.37■■□□□ 1.01
TRAF4-214ENST00000580073 ARHGEF5Q12774 1597 aa21.36■■□□□ 1.01
TRAF4-214ENST00000580073 NCOA2Q15596 1464 aa21.36■■□□□ 1.01
TRAF4-214ENST00000580073 KDM5DQ9BY66 1539 aa21.35■■□□□ 1.01
TRAF4-214ENST00000580073 PTPRKQ15262 1439 aa21.35■■□□□ 1.01
TRAF4-214ENST00000580073 ZC3H13Q5T200 1668 aaKnown RBP21.32■■□□□ 1
TRAF4-214ENST00000580073 RSPH4AQ5TD94 716 aa21.32■■□□□ 1
TRAF4-214ENST00000580073 GGT6Q6P531 493 aa21.32■■□□□ 1
TRAF4-214ENST00000580073 DHX29Q7Z478 1369 aaKnown RBP21.31■■□□□ 1
TRAF4-214ENST00000580073 PKD2Q13563 968 aa21.3■■□□□ 1
TRAF4-214ENST00000580073 A2ML1A8K2U0 1454 aa21.3■■□□□ 1
TRAF4-214ENST00000580073 TCOF1Q13428 1488 aaKnown RBP21.3■■□□□ 1
TRAF4-214ENST00000580073 DNMT1P26358 1616 aaKnown RBP21.29■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 38.1 ms