RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 EHBP1L1Q8N3D4 1523 aa30.91■■■□□ 2.54
SS18-209ENST00000578595 DENND4BO75064 1496 aaPredicted RBP30.9■■■□□ 2.54
SS18-209ENST00000578595 EFCAB2Q5VUJ9 269 aa30.89■■■□□ 2.54
SS18-209ENST00000578595 TIAM1Q13009 1591 aa30.88■■■□□ 2.53
SS18-209ENST00000578595 AEBP2Q6ZN18 517 aaPredicted RBP30.86■■■□□ 2.53
SS18-209ENST00000578595 SCAPERQ9BY12 1400 aa30.82■■■□□ 2.52
SS18-209ENST00000578595 SUPT6HQ7KZ85 1726 aaKnown RBP30.81■■■□□ 2.52
SS18-209ENST00000578595 ITSN2Q9NZM3 1697 aa30.8■■■□□ 2.52
SS18-209ENST00000578595 CCNB3Q8WWL7 1395 aa30.78■■■□□ 2.52
SS18-209ENST00000578595 POGZQ7Z3K3 1410 aa30.76■■■□□ 2.51
SS18-209ENST00000578595 ARHGEF40Q8TER5 1519 aa30.75■■■□□ 2.51
SS18-209ENST00000578595 ZNF777Q9ULD5 760 aaPredicted RBP30.75■■■□□ 2.51
SS18-209ENST00000578595 ZMYM4Q5VZL5 1548 aa30.74■■■□□ 2.51
SS18-209ENST00000578595 ABCC1P33527 1531 aa30.73■■■□□ 2.51
SS18-209ENST00000578595 GPATCH8Q9UKJ3 1502 aaKnown RBP30.73■■■□□ 2.51
SS18-209ENST00000578595 ZFYVE16Q7Z3T8 1539 aa30.72■■■□□ 2.51
SS18-209ENST00000578595 APLP2Q06481 763 aa30.71■■■□□ 2.51
SS18-209ENST00000578595 SAMD9LQ8IVG5 1584 aa30.7■■■□□ 2.5
SS18-209ENST00000578595 MYT1LQ9UL68 1186 aa30.69■■■□□ 2.5
SS18-209ENST00000578595 ZNF518AQ6AHZ1 1483 aa30.69■■■□□ 2.5
SS18-209ENST00000578595 LRRC9Q6ZRR7 1453 aa30.68■■■□□ 2.5
SS18-209ENST00000578595 CFDP1Q9UEE9 299 aaPredicted RBP30.67■■■□□ 2.5
SS18-209ENST00000578595 NCOA2Q15596 1464 aa30.67■■■□□ 2.5
SS18-209ENST00000578595 MAP3K1Q13233 1512 aa30.65■■■□□ 2.5
SS18-209ENST00000578595 SYCP2Q9BX26 1530 aa30.65■■■□□ 2.5
SS18-209ENST00000578595 KDM4FA0A1W2PPD8 638 aa30.65■■■□□ 2.5
SS18-209ENST00000578595 HECW2Q9P2P5 1572 aa30.63■■■□□ 2.49
SS18-209ENST00000578595 ARID4BQ4LE39 1312 aaPredicted RBP30.63■■■□□ 2.49
SS18-209ENST00000578595 YEATS2Q9ULM3 1422 aa30.63■■■□□ 2.49
SS18-209ENST00000578595 MAGI2Q86UL8 1455 aa30.63■■■□□ 2.49
SS18-209ENST00000578595 KDM5CP41229 1560 aa30.62■■■□□ 2.49
SS18-209ENST00000578595 AFAP1Q8N556 730 aa30.6■■■□□ 2.49
SS18-209ENST00000578595 ARHGEF12Q9NZN5 1544 aa30.6■■■□□ 2.49
SS18-209ENST00000578595 TRAPPC8Q9Y2L5 1435 aa30.58■■■□□ 2.49
SS18-209ENST00000578595 PLEKHH2Q8IVE3 1493 aa30.57■■■□□ 2.48
SS18-209ENST00000578595 KANK4Q5T7N3 995 aaPredicted RBP30.57■■■□□ 2.48
SS18-209ENST00000578595 BCORL1Q5H9F3 1711 aa30.55■■■□□ 2.48
SS18-209ENST00000578595 ABCA6Q8N139 1617 aa30.52■■■□□ 2.48
SS18-209ENST00000578595 HNRNPMP52272 730 aaKnown RBP eCLIP30.52■■■□□ 2.48
SS18-209ENST00000578595 SIGLEC1Q9BZZ2 1709 aa30.52■■■□□ 2.48
SS18-209ENST00000578595 DIP2CQ9Y2E4 1556 aa30.5■■■□□ 2.47
SS18-209ENST00000578595 KIDINS220Q9ULH0 1771 aa30.49■■■□□ 2.47
SS18-209ENST00000578595 ATP10AO60312 1499 aa30.49■■■□□ 2.47
SS18-209ENST00000578595 C9orf84Q5VXU9 1444 aa30.48■■■□□ 2.47
SS18-209ENST00000578595 CAMSAP2Q08AD1 1489 aa30.48■■■□□ 2.47
SS18-209ENST00000578595 ZNF644Q9H582 1327 aaPredicted RBP30.47■■■□□ 2.47
SS18-209ENST00000578595 KIAA1107Q9UPP5 1409 aa30.47■■■□□ 2.47
SS18-209ENST00000578595 ADAMTSL3P82987 1691 aa30.46■■■□□ 2.47
SS18-209ENST00000578595 MLH3Q9UHC1 1453 aa30.46■■■□□ 2.47
SS18-209ENST00000578595 MADDQ8WXG6 1647 aa30.45■■■□□ 2.47
SS18-209ENST00000578595 SPAG9O60271 1321 aaKnown RBP30.43■■■□□ 2.46
SS18-209ENST00000578595 RIMS1Q86UR5 1692 aaKnown RBP30.42■■■□□ 2.46
SS18-209ENST00000578595 ATP7AQ04656 1500 aa30.42■■■□□ 2.46
SS18-209ENST00000578595 FER1L4A9Z1Z3 1794 aa30.41■■■□□ 2.46
SS18-209ENST00000578595 MLECQ14165 292 aa30.41■■■□□ 2.46
SS18-209ENST00000578595 INO80Q9ULG1 1556 aaPredicted RBP30.41■■■□□ 2.46
SS18-209ENST00000578595 MYOM3Q5VTT5 1437 aa30.4■■■□□ 2.46
SS18-209ENST00000578595 CCDC141Q6ZP82 1450 aa30.36■■■□□ 2.45
SS18-209ENST00000578595 REREQ9P2R6 1566 aa30.35■■■□□ 2.45
SS18-209ENST00000578595 MBD5Q9P267 1494 aa30.33■■■□□ 2.45
SS18-209ENST00000578595 ADGBQ8N7X0 1667 aa30.33■■■□□ 2.45
SS18-209ENST00000578595 ARHGEF5Q12774 1597 aa30.31■■■□□ 2.44
SS18-209ENST00000578595 MIA2Q96PC5 1412 aa30.3■■■□□ 2.44
SS18-209ENST00000578595 PTPN23Q9H3S7 1636 aa30.29■■■□□ 2.44
SS18-209ENST00000578595 PTPRMP28827 1452 aa30.28■■■□□ 2.44
SS18-209ENST00000578595 PLPPR3Q6T4P5 718 aa30.27■■■□□ 2.44
SS18-209ENST00000578595 AGLP35573 1532 aa30.23■■■□□ 2.43
SS18-209ENST00000578595 A2MP01023 1474 aa30.23■■■□□ 2.43
SS18-209ENST00000578595 RSPH4AQ5TD94 716 aa30.22■■■□□ 2.43
SS18-209ENST00000578595 FGD6Q6ZV73 1430 aa30.22■■■□□ 2.43
SS18-209ENST00000578595 TSPY4P0CV99 314 aa30.2■■■□□ 2.43
SS18-209ENST00000578595 TSPY10P0CW01 314 aa30.2■■■□□ 2.43
SS18-209ENST00000578595 RTEL1-TNFRSF6BF6WH68 1400 aa30.2■■■□□ 2.42
SS18-209ENST00000578595 CROCC2H7BZ55 1655 aa30.2■■■□□ 2.42
SS18-209ENST00000578595 PLXNC1O60486 1568 aa30.19■■■□□ 2.42
SS18-209ENST00000578595 PPARGC1BQ86YN6 1023 aaKnown RBP30.17■■■□□ 2.42
SS18-209ENST00000578595 ESF1Q9H501 851 aaKnown RBP30.17■■■□□ 2.42
SS18-209ENST00000578595 MAST1Q9Y2H9 1570 aa30.14■■■□□ 2.42
SS18-209ENST00000578595 DNMT1P26358 1616 aaKnown RBP30.12■■■□□ 2.41
SS18-209ENST00000578595 TCOF1Q13428 1488 aaKnown RBP30.11■■■□□ 2.41
SS18-209ENST00000578595 FAM50AQ14320 339 aaKnown RBP30.09■■■□□ 2.41
SS18-209ENST00000578595 CLTCQ00610 1675 aaKnown RBP30.07■■■□□ 2.41
SS18-209ENST00000578595 C3P01024 1663 aa30.07■■■□□ 2.4
SS18-209ENST00000578595 GGT6Q6P531 493 aa30.05■■■□□ 2.4
SS18-209ENST00000578595 DAPK1P53355 1430 aa30.05■■■□□ 2.4
SS18-209ENST00000578595 DHX29Q7Z478 1369 aaKnown RBP30.04■■■□□ 2.4
SS18-209ENST00000578595 SHANK2Q9UPX8 1470 aa30.03■■■□□ 2.4
SS18-209ENST00000578595 ABCC5O15440 1437 aa30.03■■■□□ 2.4
SS18-209ENST00000578595 MROH2AA6NES4 1674 aa30.01■■■□□ 2.4
SS18-209ENST00000578595 CNTLNQ9NXG0 1405 aa30■■■□□ 2.39
SS18-209ENST00000578595 CEBPAP49715 358 aaPredicted RBP30■■■□□ 2.39
SS18-209ENST00000578595 KIF3BO15066 747 aa29.99■■■□□ 2.39
SS18-209ENST00000578595 PREX1Q8TCU6 1659 aa29.97■■■□□ 2.39
SS18-209ENST00000578595 CHIC2Q9UKJ5 165 aa29.96■■■□□ 2.39
SS18-209ENST00000578595 EIF2AK4Q9P2K8 1649 aaKnown RBP29.96■■■□□ 2.39
SS18-209ENST00000578595 DUOX2Q9NRD8 1548 aa29.95■■■□□ 2.38
SS18-209ENST00000578595 KIF15Q9NS87 1388 aa29.93■■■□□ 2.38
SS18-209ENST00000578595 SETD1BQ9UPS6 1966 aaKnown RBP29.93■■■□□ 2.38
SS18-209ENST00000578595 RRP7BPQ9NSQ0 103 aa29.91■■■□□ 2.38
SS18-209ENST00000578595 RNF17Q9BXT8 1623 aaKnown RBP29.89■■■□□ 2.38
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms