RNA–Protein interactions for RNA: ENST00000577300.1

SMCHD1-202, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 3

Gene SMCHD1, Length 506 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-202ENST00000577300 KIF3CO14782 793 aa14.58□□□□□ -0.08
SMCHD1-202ENST00000577300 RIMBP2O15034 1052 aa14.57□□□□□ -0.08
SMCHD1-202ENST00000577300 CDAN1Q8IWY9 1227 aa14.57□□□□□ -0.08
SMCHD1-202ENST00000577300 HOXB1P14653 301 aaPredicted RBP14.56□□□□□ -0.08
SMCHD1-202ENST00000577300 EMP3P54852 163 aa14.56□□□□□ -0.08
SMCHD1-202ENST00000577300 RYDENQ9NUL5 291 aaKnown RBP14.56□□□□□ -0.08
SMCHD1-202ENST00000577300 C2orf72A6NCS6 295 aa14.54□□□□□ -0.08
SMCHD1-202ENST00000577300 ZSWIM6Q9HCJ5 1215 aa14.54□□□□□ -0.08
SMCHD1-202ENST00000577300 DCAF8L2P0C7V8 631 aa14.52□□□□□ -0.09
SMCHD1-202ENST00000577300 TMC2Q8TDI7 906 aa14.49□□□□□ -0.09
SMCHD1-202ENST00000577300 PLSCR2Q9NRY7 297 aa14.49□□□□□ -0.09
SMCHD1-202ENST00000577300 AMER1Q5JTC6 1135 aaPredicted RBP14.48□□□□□ -0.09
SMCHD1-202ENST00000577300 FAM205CA6NFA0 338 aa14.46□□□□□ -0.09
SMCHD1-202ENST00000577300 GPR153Q6NV75 609 aa14.46□□□□□ -0.09
SMCHD1-202ENST00000577300 HS3ST6Q96QI5 342 aa14.46□□□□□ -0.09
SMCHD1-202ENST00000577300 POTEB3A0JP26 581 aa14.43□□□□□ -0.1
SMCHD1-202ENST00000577300 POTEBQ6S5H4 581 aa14.43□□□□□ -0.1
SMCHD1-202ENST00000577300 GTPBP6O43824 516 aaPredicted RBP14.42□□□□□ -0.1
SMCHD1-202ENST00000577300 SLC34A2O95436 690 aa14.4□□□□□ -0.1
SMCHD1-202ENST00000577300 ARSIQ5FYB1 569 aa14.38□□□□□ -0.11
SMCHD1-202ENST00000577300 GPHNQ9NQX3 736 aaPredicted RBP14.38□□□□□ -0.11
SMCHD1-202ENST00000577300 ERBB3P21860 1342 aa14.38□□□□□ -0.11
SMCHD1-202ENST00000577300 FOXK1P85037 733 aa14.36□□□□□ -0.11
SMCHD1-202ENST00000577300 RTN4Q9NQC3 1192 aaKnown RBP14.36□□□□□ -0.11
SMCHD1-202ENST00000577300 KHSRPQ92945 711 aaKnown RBP eCLIP14.31□□□□□ -0.122e-8■■■□□ 16.5
SMCHD1-202ENST00000577300 VARS2Q5ST30 1063 aaKnown RBP14.3□□□□□ -0.12
SMCHD1-202ENST00000577300 PLPP6Q8IY26 295 aa14.3□□□□□ -0.12
SMCHD1-202ENST00000577300 KRTAP3-3Q9BYR6 98 aa14.3□□□□□ -0.12
SMCHD1-202ENST00000577300 KRTAP3-2Q9BYR7 98 aa14.3□□□□□ -0.12
SMCHD1-202ENST00000577300 CRISPLD2Q9H0B8 497 aa14.3□□□□□ -0.12
SMCHD1-202ENST00000577300 PCDHGA4Q9Y5G9 962 aa14.3□□□□□ -0.12
SMCHD1-202ENST00000577300 DSG2Q14126 1118 aa14.29□□□□□ -0.12
SMCHD1-202ENST00000577300 BBXQ8WY36 941 aaPredicted RBP14.27□□□□□ -0.13
SMCHD1-202ENST00000577300 ZNF316A6NFI3 1004 aaPredicted RBP14.26□□□□□ -0.13
SMCHD1-202ENST00000577300 PTCD2Q8WV60 388 aaKnown RBP14.26□□□□□ -0.13
SMCHD1-202ENST00000577300 NUDT7P0C024 238 aa14.24□□□□□ -0.13
SMCHD1-202ENST00000577300 ZNF687Q8N1G0 1237 aa14.24□□□□□ -0.13
SMCHD1-202ENST00000577300 PDE4AP27815 886 aa14.23□□□□□ -0.13
SMCHD1-202ENST00000577300 NCKAP5LQ9HCH0 1330 aa14.22□□□□□ -0.13
SMCHD1-202ENST00000577300 SPNS2Q8IVW8 549 aa14.22□□□□□ -0.13
SMCHD1-202ENST00000577300 PPP1R15BQ5SWA1 713 aa14.19□□□□□ -0.14
SMCHD1-202ENST00000577300 KDM4FA0A1W2PPD8 638 aa14.17□□□□□ -0.14
SMCHD1-202ENST00000577300 LHX6Q9UPM6 363 aa14.17□□□□□ -0.14
SMCHD1-202ENST00000577300 TBC1D12O60347 775 aa14.16□□□□□ -0.14
SMCHD1-202ENST00000577300 MMRN1Q13201 1228 aa14.13□□□□□ -0.15
SMCHD1-202ENST00000577300 MFSD10Q14728 455 aa14.13□□□□□ -0.15
SMCHD1-202ENST00000577300 LARP6Q9BRS8 491 aaKnown RBP14.13□□□□□ -0.15
SMCHD1-202ENST00000577300 OXER1Q8TDS5 423 aa14.12□□□□□ -0.15
SMCHD1-202ENST00000577300 DDX27Q96GQ7 796 aaKnown RBP14.12□□□□□ -0.15
SMCHD1-202ENST00000577300 ZBTB4Q9P1Z0 1013 aaPredicted RBP14.11□□□□□ -0.15
SMCHD1-202ENST00000577300 PSDA5PKW4 1024 aaPredicted RBP14.1□□□□□ -0.15
SMCHD1-202ENST00000577300 CADPS2Q86UW7 1296 aa14.1□□□□□ -0.15
SMCHD1-202ENST00000577300 SPRYD3Q8NCJ5 442 aa14.08□□□□□ -0.16
SMCHD1-202ENST00000577300 PBX2P40425 430 aa14.06□□□□□ -0.16
SMCHD1-202ENST00000577300 UPF1Q92900 1129 aaKnown RBP eCLIP14.06□□□□□ -0.16
SMCHD1-202ENST00000577300 POTEEQ6S8J3 1075 aa14.01□□□□□ -0.17
SMCHD1-202ENST00000577300 LSM11P83369 360 aaKnown RBP eCLIP13.99□□□□□ -0.17
SMCHD1-202ENST00000577300 PPP4R3BQ5MIZ7 849 aa13.97□□□□□ -0.17
SMCHD1-202ENST00000577300 PAXIP1Q6ZW49 1069 aaPredicted RBP13.97□□□□□ -0.17
SMCHD1-202ENST00000577300 ANO8Q9HCE9 1232 aaPredicted RBP13.96□□□□□ -0.17
SMCHD1-202ENST00000577300 EMILIN3Q9NT22 766 aa13.96□□□□□ -0.17
SMCHD1-202ENST00000577300 PTGER2P43116 358 aa13.95□□□□□ -0.18
SMCHD1-202ENST00000577300 ANKRD13DQ6ZTN6 518 aa13.95□□□□□ -0.18
SMCHD1-202ENST00000577300 CFAP44Q96MT7 982 aa13.95□□□□□ -0.18
SMCHD1-202ENST00000577300 AXIN2Q9Y2T1 843 aa13.95□□□□□ -0.18
SMCHD1-202ENST00000577300 ARHGAP33O14559 1287 aa13.94□□□□□ -0.18
SMCHD1-202ENST00000577300 EVI5O60447 810 aa13.93□□□□□ -0.18
SMCHD1-202ENST00000577300 MAP3K9P80192 1104 aa13.93□□□□□ -0.18
SMCHD1-202ENST00000577300 CAMK2BQ13554 666 aa13.93□□□□□ -0.18
SMCHD1-202ENST00000577300 MYT1LQ9UL68 1186 aa13.89□□□□□ -0.19
SMCHD1-202ENST00000577300 FOSBP53539 338 aa13.88□□□□□ -0.19
SMCHD1-202ENST00000577300 ZNF454Q8N9F8 522 aa13.88□□□□□ -0.19
SMCHD1-202ENST00000577300 RNF166Q96A37 237 aaPredicted RBP13.87□□□□□ -0.19
SMCHD1-202ENST00000577300 JPH4Q96JJ6 628 aa13.86□□□□□ -0.19
SMCHD1-202ENST00000577300 PSEN2P49810 448 aa13.84□□□□□ -0.19
SMCHD1-202ENST00000577300 BCL2L12Q9HB09 334 aa13.84□□□□□ -0.19
SMCHD1-202ENST00000577300 TK2O00142 265 aa13.83□□□□□ -0.2
SMCHD1-202ENST00000577300 DMRTA1Q5VZB9 504 aa13.83□□□□□ -0.2
SMCHD1-202ENST00000577300 ADGRD1Q6QNK2 874 aa13.82□□□□□ -0.2
SMCHD1-202ENST00000577300 KCNH8Q96L42 1107 aa13.82□□□□□ -0.2
SMCHD1-202ENST00000577300 KCNK17Q96T54 332 aa13.8□□□□□ -0.2
SMCHD1-202ENST00000577300 ZDHHC16Q969W1 377 aa13.79□□□□□ -0.2
SMCHD1-202ENST00000577300 DPYSL4O14531 572 aa13.78□□□□□ -0.2
SMCHD1-202ENST00000577300 HRO43593 1189 aa13.75□□□□□ -0.21
SMCHD1-202ENST00000577300 PTPREP23469 700 aa13.75□□□□□ -0.21
SMCHD1-202ENST00000577300 PCDHGA10Q9Y5H3 936 aa13.75□□□□□ -0.21
SMCHD1-202ENST00000577300 ADAM33Q9BZ11 813 aa13.74□□□□□ -0.21
SMCHD1-202ENST00000577300 WDR70Q9NW82 654 aa13.74□□□□□ -0.21
SMCHD1-202ENST00000577300 PHF14O94880 888 aa13.73□□□□□ -0.21
SMCHD1-202ENST00000577300 E2F4Q16254 413 aa13.73□□□□□ -0.21
SMCHD1-202ENST00000577300 SLC4A5Q9BY07 1137 aa13.73□□□□□ -0.21
SMCHD1-202ENST00000577300 FBXW7Q969H0 707 aa13.71□□□□□ -0.21
SMCHD1-202ENST00000577300 TYW1BQ6NUM6 668 aa13.7□□□□□ -0.22
SMCHD1-202ENST00000577300 VPS9D1Q9Y2B5 631 aa13.7□□□□□ -0.22
SMCHD1-202ENST00000577300 ARIH1Q9Y4X5 557 aaPredicted RBP13.7□□□□□ -0.22
SMCHD1-202ENST00000577300 PDIA6Q15084 440 aa13.68□□□□□ -0.22
SMCHD1-202ENST00000577300 EPAS1Q99814 870 aa13.68□□□□□ -0.22
SMCHD1-202ENST00000577300 SPDYE16A6NNV3 312 aaPredicted RBP13.67□□□□□ -0.22
SMCHD1-202ENST00000577300 ZBED2Q9BTP6 218 aa13.67□□□□□ -0.22
SMCHD1-202ENST00000577300 TSHZ2Q9NRE2 1034 aa13.65□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms