RNA–Protein interactions for RNA: ENST00000575100.1

VPS53-217, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 1,972 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-217ENST00000575100 NKX1-1Q15270 411 aaPredicted RBP10.77□□□□□ -0.69
VPS53-217ENST00000575100 PRG4Q92954 1404 aaPredicted RBP10.77□□□□□ -0.69
VPS53-217ENST00000575100 GTPBP6O43824 516 aaPredicted RBP10.76□□□□□ -0.69
VPS53-217ENST00000575100 IGSF3O75054 1194 aa10.75□□□□□ -0.69
VPS53-217ENST00000575100 MAPKBP1O60336 1514 aa10.75□□□□□ -0.69
VPS53-217ENST00000575100 HNRNPUL2-BSCL2H3BQZ7 746 aaPredicted RBP10.74□□□□□ -0.69
VPS53-217ENST00000575100 HNRNPUL2Q1KMD3 747 aaKnown RBP10.74□□□□□ -0.69
VPS53-217ENST00000575100 JPH4Q96JJ6 628 aa10.73□□□□□ -0.69
VPS53-217ENST00000575100 ABCC10Q5T3U5 1492 aa10.72□□□□□ -0.69
VPS53-217ENST00000575100 DIP2BQ9P265 1576 aa10.72□□□□□ -0.69
VPS53-217ENST00000575100 ADCY10Q96PN6 1610 aa10.72□□□□□ -0.69
VPS53-217ENST00000575100 ZC3H15Q8WU90 426 aaKnown RBP10.72□□□□□ -0.69
VPS53-217ENST00000575100 CUL7Q14999 1698 aa10.71□□□□□ -0.69
VPS53-217ENST00000575100 FAM9AQ8IZU1 332 aaPredicted RBP10.71□□□□□ -0.69
VPS53-217ENST00000575100 SLC24A3Q9HC58 644 aa10.7□□□□□ -0.7
VPS53-217ENST00000575100 KIAA0586Q9BVV6 1533 aa10.69□□□□□ -0.7
VPS53-217ENST00000575100 C1QBPQ07021 282 aaKnown RBP10.69□□□□□ -0.7
VPS53-217ENST00000575100 IGF1RP08069 1367 aa10.65□□□□□ -0.7
VPS53-217ENST00000575100 KIF27Q86VH2 1401 aa10.65□□□□□ -0.71
VPS53-217ENST00000575100 KCNV2Q8TDN2 545 aa10.64□□□□□ -0.71
VPS53-217ENST00000575100 KDM6BO15054 1643 aa10.64□□□□□ -0.71
VPS53-217ENST00000575100 FAM69CQ0P6D2 419 aa10.63□□□□□ -0.71
VPS53-217ENST00000575100 ARID3CA6NKF2 412 aa10.62□□□□□ -0.71
VPS53-217ENST00000575100 TSPOAP1O95153 1857 aa10.62□□□□□ -0.71
VPS53-217ENST00000575100 HMGB1P09429 215 aaKnown RBP10.61□□□□□ -0.71
VPS53-217ENST00000575100 APBB1O00213 710 aa10.61□□□□□ -0.71
VPS53-217ENST00000575100 KCTD17Q8N5Z5 321 aa10.61□□□□□ -0.71
VPS53-217ENST00000575100 GLI2P10070 1586 aa10.59□□□□□ -0.71
VPS53-217ENST00000575100 PPRC1Q5VV67 1664 aaKnown RBP10.59□□□□□ -0.71
VPS53-217ENST00000575100 GRWD1Q9BQ67 446 aaKnown RBP eCLIP10.59□□□□□ -0.71
VPS53-217ENST00000575100 CIZ1Q9ULV3 898 aaPredicted RBP10.59□□□□□ -0.71
VPS53-217ENST00000575100 RNF25Q96BH1 459 aaPredicted RBP10.58□□□□□ -0.72
VPS53-217ENST00000575100 ABCC2Q92887 1545 aa10.58□□□□□ -0.72
VPS53-217ENST00000575100 IQGAP2Q13576 1575 aa10.58□□□□□ -0.72
VPS53-217ENST00000575100 PTPRGP23470 1445 aa10.58□□□□□ -0.72
VPS53-217ENST00000575100 UHRF1BP1LA0JNW5 1464 aa10.57□□□□□ -0.72
VPS53-217ENST00000575100 CDK11BP21127 795 aaKnown RBP10.57□□□□□ -0.72
VPS53-217ENST00000575100 RGS22Q8NE09 1264 aa10.57□□□□□ -0.72
VPS53-217ENST00000575100 CDK11AQ9UQ88 783 aaPredicted RBP10.57□□□□□ -0.72
VPS53-217ENST00000575100 EEA1Q15075 1411 aa10.57□□□□□ -0.72
VPS53-217ENST00000575100 HSP90B1P14625 803 aaKnown RBP10.57□□□□□ -0.72
VPS53-217ENST00000575100 CARMIL1Q5VZK9 1371 aa10.57□□□□□ -0.72
VPS53-217ENST00000575100 TNIKQ9UKE5 1360 aa10.57□□□□□ -0.72
VPS53-217ENST00000575100 CARMIL2Q6F5E8 1435 aa10.56□□□□□ -0.72
VPS53-217ENST00000575100 PLB1Q6P1J6 1458 aa10.55□□□□□ -0.72
VPS53-217ENST00000575100 RAD21O60216 631 aa10.55□□□□□ -0.72
VPS53-217ENST00000575100 MAP3K4Q9Y6R4 1608 aa10.53□□□□□ -0.72
VPS53-217ENST00000575100 DISP1Q96F81 1524 aa10.53□□□□□ -0.72
VPS53-217ENST00000575100 ASXL2Q76L83 1435 aa10.53□□□□□ -0.72
VPS53-217ENST00000575100 KDM4FA0A1W2PPD8 638 aa10.53□□□□□ -0.72
VPS53-217ENST00000575100 UGGT2Q9NYU1 1516 aa10.52□□□□□ -0.72
VPS53-217ENST00000575100 UACAQ9BZF9 1416 aa10.52□□□□□ -0.73
VPS53-217ENST00000575100 PLCD3Q8N3E9 789 aa10.52□□□□□ -0.73
VPS53-217ENST00000575100 U3KPZ7 1027 aaPredicted RBP10.52□□□□□ -0.73
VPS53-217ENST00000575100 KDM5BQ9UGL1 1544 aa10.51□□□□□ -0.73
VPS53-217ENST00000575100 PRXQ9BXM0 1461 aa10.51□□□□□ -0.73
VPS53-217ENST00000575100 RAPGEF2Q9Y4G8 1499 aa10.51□□□□□ -0.73
VPS53-217ENST00000575100 ZMYND10O75800 440 aa10.5□□□□□ -0.73
VPS53-217ENST00000575100 KIAA0556O60303 1618 aa10.5□□□□□ -0.73
VPS53-217ENST00000575100 ZCCHC11Q5TAX3 1644 aaKnown RBP10.5□□□□□ -0.73
VPS53-217ENST00000575100 PUS7Q96PZ0 661 aaKnown RBP10.5□□□□□ -0.73
VPS53-217ENST00000575100 MKRN3Q13064 507 aaKnown RBP10.49□□□□□ -0.73
VPS53-217ENST00000575100 TRAIPQ9BWF2 469 aa10.49□□□□□ -0.73
VPS53-217ENST00000575100 EPRSP07814 1512 aaKnown RBP10.49□□□□□ -0.73
VPS53-217ENST00000575100 STAG3Q9UJ98 1225 aa10.48□□□□□ -0.73
VPS53-217ENST00000575100 KIF21BO75037 1637 aa10.48□□□□□ -0.73
VPS53-217ENST00000575100 CTTNBP2Q8WZ74 1663 aa10.48□□□□□ -0.73
VPS53-217ENST00000575100 IL27Q8NEV9 243 aa10.47□□□□□ -0.73
VPS53-217ENST00000575100 GPBP1L1Q9HC44 474 aaPredicted RBP10.46□□□□□ -0.73
VPS53-217ENST00000575100 MTMR7Q9Y216 660 aa10.46□□□□□ -0.73
VPS53-217ENST00000575100 TEX14Q8IWB6 1497 aa10.46□□□□□ -0.73
VPS53-217ENST00000575100 CCDC82Q8N4S0 544 aa10.46□□□□□ -0.74
VPS53-217ENST00000575100 GOLGA3Q08378 1498 aa10.46□□□□□ -0.74
VPS53-217ENST00000575100 ADGRL1O94910 1474 aa10.45□□□□□ -0.74
VPS53-217ENST00000575100 COL17A1Q9UMD9 1497 aaPredicted RBP10.45□□□□□ -0.74
VPS53-217ENST00000575100 CFAP43Q8NDM7 1665 aa10.43□□□□□ -0.74
VPS53-217ENST00000575100 POTEHQ6S545 545 aa10.43□□□□□ -0.74
VPS53-217ENST00000575100 WDR7Q9Y4E6 1490 aa10.42□□□□□ -0.74
VPS53-217ENST00000575100 ABCA8O94911 1581 aa10.42□□□□□ -0.74
VPS53-217ENST00000575100 CHMP4AQ9BY43 222 aa10.42□□□□□ -0.74
VPS53-217ENST00000575100 PLEKHG5O94827 1062 aa10.41□□□□□ -0.74
VPS53-217ENST00000575100 WDR70Q9NW82 654 aa10.41□□□□□ -0.74
VPS53-217ENST00000575100 MAGI3Q5TCQ9 1506 aa10.4□□□□□ -0.74
VPS53-217ENST00000575100 ZNF428Q96B54 188 aa10.4□□□□□ -0.74
VPS53-217ENST00000575100 RYDENQ9NUL5 291 aaKnown RBP10.39□□□□□ -0.75
VPS53-217ENST00000575100 TESPA1A2RU30 521 aaPredicted RBP10.39□□□□□ -0.75
VPS53-217ENST00000575100 TMCO4Q5TGY1 634 aa10.38□□□□□ -0.75
VPS53-217ENST00000575100 MIER1Q8N108 512 aa10.38□□□□□ -0.75
VPS53-217ENST00000575100 RBM25P49756 843 aaKnown RBP10.37□□□□□ -0.75
VPS53-217ENST00000575100 BARGINQ6ZT62 677 aa10.37□□□□□ -0.75
VPS53-217ENST00000575100 HECW2Q9P2P5 1572 aa10.37□□□□□ -0.75
VPS53-217ENST00000575100 STK25O00506 426 aa10.37□□□□□ -0.75
VPS53-217ENST00000575100 RIOK3O14730 519 aaKnown RBP10.37□□□□□ -0.75
VPS53-217ENST00000575100 KDM4CQ9H3R0 1056 aa10.37□□□□□ -0.75
VPS53-217ENST00000575100 MFAP1P55081 439 aaKnown RBP10.36□□□□□ -0.75
VPS53-217ENST00000575100 POLA2Q14181 598 aa10.36□□□□□ -0.75
VPS53-217ENST00000575100 ARHGEF1Q92888 912 aaKnown RBP10.36□□□□□ -0.75
VPS53-217ENST00000575100 FOXD4L5Q5VV16 416 aaPredicted RBP10.35□□□□□ -0.75
VPS53-217ENST00000575100 CADPS2Q86UW7 1296 aa10.35□□□□□ -0.75
VPS53-217ENST00000575100 FOXD4L4Q8WXT5 416 aaPredicted RBP10.35□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 19 ms