RNA–Protein interactions for RNA: ENST00000574933.1

CCDC40-213, Transcript of coiled-coil domain containing 40, humanhuman

TSL 3

Gene CCDC40, Length 326 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC40-213ENST00000574933 NEO1Q92859 1461 aa28.3■■■□□ 2.12
CCDC40-213ENST00000574933 PHLDB1Q86UU1 1377 aa28.28■■■□□ 2.12
CCDC40-213ENST00000574933 FANCAO15360 1455 aa28.27■■■□□ 2.12
CCDC40-213ENST00000574933 ARHGAP5Q13017 1502 aa28.27■■■□□ 2.12
CCDC40-213ENST00000574933 EFCAB2Q5VUJ9 269 aa28.23■■■□□ 2.11
CCDC40-213ENST00000574933 MYOM3Q5VTT5 1437 aa28.23■■■□□ 2.11
CCDC40-213ENST00000574933 AKNAQ7Z591 1439 aa28.2■■■□□ 2.11
CCDC40-213ENST00000574933 MIA2Q96PC5 1412 aa28.19■■■□□ 2.1
CCDC40-213ENST00000574933 SAMD9LQ8IVG5 1584 aa28.19■■■□□ 2.1
CCDC40-213ENST00000574933 CFDP1Q9UEE9 299 aaPredicted RBP28.18■■■□□ 2.1
CCDC40-213ENST00000574933 ABCC1P33527 1531 aa28.15■■■□□ 2.1
CCDC40-213ENST00000574933 KDM6BO15054 1643 aa28.14■■■□□ 2.09
CCDC40-213ENST00000574933 PPARGC1BQ86YN6 1023 aaKnown RBP28.13■■■□□ 2.09
CCDC40-213ENST00000574933 ADGRL1O94910 1474 aa28.13■■■□□ 2.09
CCDC40-213ENST00000574933 PLEKHH2Q8IVE3 1493 aa28.13■■■□□ 2.09
CCDC40-213ENST00000574933 COL17A1Q9UMD9 1497 aaPredicted RBP28.12■■■□□ 2.09
CCDC40-213ENST00000574933 FGD6Q6ZV73 1430 aa28.11■■■□□ 2.09
CCDC40-213ENST00000574933 RICTORQ6R327 1708 aa28.11■■■□□ 2.09
CCDC40-213ENST00000574933 KIAA1107Q9UPP5 1409 aa28.1■■■□□ 2.09
CCDC40-213ENST00000574933 PTPN23Q9H3S7 1636 aa28.1■■■□□ 2.09
CCDC40-213ENST00000574933 CAMSAP2Q08AD1 1489 aa28.08■■■□□ 2.09
CCDC40-213ENST00000574933 SCAPERQ9BY12 1400 aa28.08■■■□□ 2.09
CCDC40-213ENST00000574933 TCOF1Q13428 1488 aaKnown RBP28.08■■■□□ 2.09
CCDC40-213ENST00000574933 ARHGEF12Q9NZN5 1544 aa28.07■■■□□ 2.08
CCDC40-213ENST00000574933 DENND4BO75064 1496 aaPredicted RBP28.06■■■□□ 2.08
CCDC40-213ENST00000574933 FRMPD1Q5SYB0 1578 aa28.06■■■□□ 2.08
CCDC40-213ENST00000574933 SYCP2Q9BX26 1530 aa28.05■■■□□ 2.08
CCDC40-213ENST00000574933 ZNF777Q9ULD5 760 aaPredicted RBP28.05■■■□□ 2.08
CCDC40-213ENST00000574933 ZNF644Q9H582 1327 aaPredicted RBP28.04■■■□□ 2.08
CCDC40-213ENST00000574933 POGZQ7Z3K3 1410 aa28.03■■■□□ 2.08
CCDC40-213ENST00000574933 ARHGEF5Q12774 1597 aa28.03■■■□□ 2.08
CCDC40-213ENST00000574933 MBD5Q9P267 1494 aa28.02■■■□□ 2.08
CCDC40-213ENST00000574933 KDM5CP41229 1560 aa28■■■□□ 2.07
CCDC40-213ENST00000574933 ZNF518AQ6AHZ1 1483 aa28■■■□□ 2.07
CCDC40-213ENST00000574933 ZMYM4Q5VZL5 1548 aa27.99■■■□□ 2.07
CCDC40-213ENST00000574933 RRBP1Q9P2E9 1410 aaKnown RBP27.99■■■□□ 2.07
CCDC40-213ENST00000574933 TRAPPC8Q9Y2L5 1435 aa27.98■■■□□ 2.07
CCDC40-213ENST00000574933 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP27.97■■■□□ 2.07
CCDC40-213ENST00000574933 RAPGEF3O95398 923 aa27.95■■■□□ 2.06
CCDC40-213ENST00000574933 HNRNPMP52272 730 aaKnown RBP eCLIP27.95■■■□□ 2.06
CCDC40-213ENST00000574933 RSPH4AQ5TD94 716 aa27.95■■■□□ 2.06
CCDC40-213ENST00000574933 DNMT1P26358 1616 aaKnown RBP27.93■■■□□ 2.06
CCDC40-213ENST00000574933 CCDC141Q6ZP82 1450 aa27.93■■■□□ 2.06
CCDC40-213ENST00000574933 CROCC2H7BZ55 1655 aa27.92■■■□□ 2.06
CCDC40-213ENST00000574933 MAGI2Q86UL8 1455 aa27.9■■■□□ 2.06
CCDC40-213ENST00000574933 AFAP1Q8N556 730 aa27.9■■■□□ 2.06
CCDC40-213ENST00000574933 HECW2Q9P2P5 1572 aa27.9■■■□□ 2.06
CCDC40-213ENST00000574933 MLH3Q9UHC1 1453 aa27.89■■■□□ 2.06
CCDC40-213ENST00000574933 KIDINS220Q9ULH0 1771 aa27.88■■■□□ 2.05
CCDC40-213ENST00000574933 INO80Q9ULG1 1556 aaPredicted RBP27.88■■■□□ 2.05
CCDC40-213ENST00000574933 MAST1Q9Y2H9 1570 aa27.87■■■□□ 2.05
CCDC40-213ENST00000574933 ABCC5O15440 1437 aa27.84■■■□□ 2.05
CCDC40-213ENST00000574933 DAPK1P53355 1430 aa27.84■■■□□ 2.05
CCDC40-213ENST00000574933 SHANK2Q9UPX8 1470 aa27.84■■■□□ 2.05
CCDC40-213ENST00000574933 RTEL1-TNFRSF6BF6WH68 1400 aa27.84■■■□□ 2.05
CCDC40-213ENST00000574933 FAM50AQ14320 339 aaKnown RBP27.83■■■□□ 2.05
CCDC40-213ENST00000574933 ATP7AQ04656 1500 aa27.82■■■□□ 2.04
CCDC40-213ENST00000574933 ZFYVE16Q7Z3T8 1539 aa27.82■■■□□ 2.04
CCDC40-213ENST00000574933 ARHGEF40Q8TER5 1519 aa27.82■■■□□ 2.04
CCDC40-213ENST00000574933 SPAG9O60271 1321 aaKnown RBP27.8■■■□□ 2.04
CCDC40-213ENST00000574933 ABCA6Q8N139 1617 aa27.78■■■□□ 2.04
CCDC40-213ENST00000574933 TSPY4P0CV99 314 aa27.77■■■□□ 2.04
CCDC40-213ENST00000574933 TSPY10P0CW01 314 aa27.77■■■□□ 2.04
CCDC40-213ENST00000574933 ADGBQ8N7X0 1667 aa27.77■■■□□ 2.04
CCDC40-213ENST00000574933 DIP2CQ9Y2E4 1556 aa27.77■■■□□ 2.04
CCDC40-213ENST00000574933 C9orf84Q5VXU9 1444 aa27.76■■■□□ 2.04
CCDC40-213ENST00000574933 YEATS2Q9ULM3 1422 aa27.76■■■□□ 2.04
CCDC40-213ENST00000574933 PLXNC1O60486 1568 aa27.76■■■□□ 2.03
CCDC40-213ENST00000574933 REREQ9P2R6 1566 aa27.73■■■□□ 2.03
CCDC40-213ENST00000574933 ADGRL2O95490 1459 aa27.72■■■□□ 2.03
CCDC40-213ENST00000574933 PTPRKQ15262 1439 aa27.72■■■□□ 2.03
CCDC40-213ENST00000574933 ATP10AO60312 1499 aa27.71■■■□□ 2.03
CCDC40-213ENST00000574933 ROCK1Q13464 1354 aa27.65■■■□□ 2.02
CCDC40-213ENST00000574933 MYT1LQ9UL68 1186 aa27.65■■■□□ 2.02
CCDC40-213ENST00000574933 NCOA1Q15788 1441 aa27.65■■■□□ 2.02
CCDC40-213ENST00000574933 SIGLEC1Q9BZZ2 1709 aa27.64■■■□□ 2.02
CCDC40-213ENST00000574933 ANKRD30AQ9BXX3 1397 aa27.63■■■□□ 2.01
CCDC40-213ENST00000574933 A2MP01023 1474 aa27.62■■■□□ 2.01
CCDC40-213ENST00000574933 AGLP35573 1532 aa27.62■■■□□ 2.01
CCDC40-213ENST00000574933 BCORL1Q5H9F3 1711 aa27.61■■■□□ 2.01
CCDC40-213ENST00000574933 DUOX2Q9NRD8 1548 aa27.6■■■□□ 2.01
CCDC40-213ENST00000574933 DHX29Q7Z478 1369 aaKnown RBP27.6■■■□□ 2.01
CCDC40-213ENST00000574933 CHIC2Q9UKJ5 165 aa27.59■■■□□ 2.01
CCDC40-213ENST00000574933 KIF15Q9NS87 1388 aa27.58■■■□□ 2.01
CCDC40-213ENST00000574933 EIF2AK4Q9P2K8 1649 aaKnown RBP27.56■■■□□ 2
CCDC40-213ENST00000574933 ITGAEP38570 1179 aa27.56■■■□□ 2
CCDC40-213ENST00000574933 GCC2Q8IWJ2 1684 aa27.54■■■□□ 2
CCDC40-213ENST00000574933 ERBINQ96RT1 1412 aa27.52■■■□□ 2
CCDC40-213ENST00000574933 RRP7BPQ9NSQ0 103 aa27.51■■□□□ 1.99
CCDC40-213ENST00000574933 HFM1A2PYH4 1435 aa27.48■■□□□ 1.99
CCDC40-213ENST00000574933 RNF17Q9BXT8 1623 aaKnown RBP27.47■■□□□ 1.99
CCDC40-213ENST00000574933 NAIPQ13075 1403 aa27.46■■□□□ 1.99
CCDC40-213ENST00000574933 ANKRD50Q9ULJ7 1429 aa27.46■■□□□ 1.99
CCDC40-213ENST00000574933 TRIM26Q12899 539 aaPredicted RBP27.45■■□□□ 1.98
CCDC40-213ENST00000574933 DEPDC5O75140 1603 aa27.44■■□□□ 1.98
CCDC40-213ENST00000574933 ADAMTSL3P82987 1691 aa27.43■■□□□ 1.98
CCDC40-213ENST00000574933 ARID4BQ4LE39 1312 aaPredicted RBP27.41■■□□□ 1.98
CCDC40-213ENST00000574933 MROH1Q8NDA8 1641 aa27.4■■□□□ 1.98
CCDC40-213ENST00000574933 KIF3BO15066 747 aa27.38■■□□□ 1.97
CCDC40-213ENST00000574933 FAM135AQ9P2D6 1515 aa27.37■■□□□ 1.97
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms