RNA–Protein interactions for RNA: ENST00000574855.1

NUP88-209, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 434 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-209ENST00000574855 FAM163AQ96GL9 167 aaPredicted RBP8.83□□□□□ -1
NUP88-209ENST00000574855 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.82□□□□□ -1
NUP88-209ENST00000574855 TMEM92Q6UXU6 159 aa8.8□□□□□ -1
NUP88-209ENST00000574855 TMC2Q8TDI7 906 aa8.77□□□□□ -1.01
NUP88-209ENST00000574855 SPRYD3Q8NCJ5 442 aa8.76□□□□□ -1.01
NUP88-209ENST00000574855 C2orf72A6NCS6 295 aa8.75□□□□□ -1.01
NUP88-209ENST00000574855 KIF3CO14782 793 aa8.74□□□□□ -1.01
NUP88-209ENST00000574855 ST18O60284 1047 aa8.74□□□□□ -1.01
NUP88-209ENST00000574855 DOK7Q18PE1 504 aa8.74□□□□□ -1.01
NUP88-209ENST00000574855 CDAN1Q8IWY9 1227 aa8.74□□□□□ -1.01
NUP88-209ENST00000574855 HOXB3P14651 431 aaPredicted RBP8.72□□□□□ -1.01
NUP88-209ENST00000574855 ZNF710Q8N1W2 664 aa8.72□□□□□ -1.01
NUP88-209ENST00000574855 GPHNQ9NQX3 736 aaPredicted RBP8.72□□□□□ -1.01
NUP88-209ENST00000574855 RIMBP2O15034 1052 aa8.71□□□□□ -1.02
NUP88-209ENST00000574855 PAXIP1Q6ZW49 1069 aaPredicted RBP8.71□□□□□ -1.02
NUP88-209ENST00000574855 CFAP44Q96MT7 982 aa8.7□□□□□ -1.02
NUP88-209ENST00000574855 PDE4AP27815 886 aa8.69□□□□□ -1.02
NUP88-209ENST00000574855 FOXK1P85037 733 aa8.67□□□□□ -1.02
NUP88-209ENST00000574855 ZSWIM6Q9HCJ5 1215 aa8.67□□□□□ -1.02
NUP88-209ENST00000574855 CRISPLD2Q9H0B8 497 aa8.66□□□□□ -1.02
NUP88-209ENST00000574855 DSG2Q14126 1118 aa8.65□□□□□ -1.02
NUP88-209ENST00000574855 PLPP6Q8IY26 295 aa8.65□□□□□ -1.02
NUP88-209ENST00000574855 HOXB1P14653 301 aaPredicted RBP8.64□□□□□ -1.03
NUP88-209ENST00000574855 LARP6Q9BRS8 491 aaKnown RBP8.64□□□□□ -1.03
NUP88-209ENST00000574855 NCKAP5LQ9HCH0 1330 aa8.63□□□□□ -1.03
NUP88-209ENST00000574855 SLC34A2O95436 690 aa8.63□□□□□ -1.03
NUP88-209ENST00000574855 MMRN1Q13201 1228 aa8.63□□□□□ -1.03
NUP88-209ENST00000574855 MARVELD3Q96A59 401 aa8.63□□□□□ -1.03
NUP88-209ENST00000574855 EMP3P54852 163 aa8.62□□□□□ -1.03
NUP88-209ENST00000574855 GPR153Q6NV75 609 aa8.61□□□□□ -1.03
NUP88-209ENST00000574855 CADPS2Q86UW7 1296 aa8.61□□□□□ -1.03
NUP88-209ENST00000574855 ARSIQ5FYB1 569 aa8.6□□□□□ -1.03
NUP88-209ENST00000574855 PPP1R15BQ5SWA1 713 aa8.6□□□□□ -1.03
NUP88-209ENST00000574855 DDX27Q96GQ7 796 aaKnown RBP8.6□□□□□ -1.03
NUP88-209ENST00000574855 PCDHGA4Q9Y5G9 962 aa8.58□□□□□ -1.04
NUP88-209ENST00000574855 TBC1D12O60347 775 aa8.57□□□□□ -1.04
NUP88-209ENST00000574855 MFSD10Q14728 455 aa8.57□□□□□ -1.04
NUP88-209ENST00000574855 PTCD2Q8WV60 388 aaKnown RBP8.57□□□□□ -1.04
NUP88-209ENST00000574855 ERBB3P21860 1342 aa8.56□□□□□ -1.04
NUP88-209ENST00000574855 FAM205CA6NFA0 338 aa8.56□□□□□ -1.04
NUP88-209ENST00000574855 KHSRPQ92945 711 aaKnown RBP eCLIP8.55□□□□□ -1.04
NUP88-209ENST00000574855 SPNS2Q8IVW8 549 aa8.54□□□□□ -1.04
NUP88-209ENST00000574855 NUDT7P0C024 238 aa8.53□□□□□ -1.04
NUP88-209ENST00000574855 HS3ST6Q96QI5 342 aa8.53□□□□□ -1.04
NUP88-209ENST00000574855 PLCB2Q00722 1185 aa8.52□□□□□ -1.05
NUP88-209ENST00000574855 OXER1Q8TDS5 423 aa8.52□□□□□ -1.05
NUP88-209ENST00000574855 VARS2Q5ST30 1063 aaKnown RBP8.51□□□□□ -1.05
NUP88-209ENST00000574855 UPF1Q92900 1129 aaKnown RBP eCLIP8.51□□□□□ -1.05
NUP88-209ENST00000574855 TSHZ2Q9NRE2 1034 aa8.51□□□□□ -1.05
NUP88-209ENST00000574855 WDR70Q9NW82 654 aa8.51□□□□□ -1.05
NUP88-209ENST00000574855 ZNF316A6NFI3 1004 aaPredicted RBP8.5□□□□□ -1.05
NUP88-209ENST00000574855 POTEB3A0JP26 581 aa8.49□□□□□ -1.05
NUP88-209ENST00000574855 POTEBQ6S5H4 581 aa8.49□□□□□ -1.05
NUP88-209ENST00000574855 MAP3K9P80192 1104 aa8.48□□□□□ -1.05
NUP88-209ENST00000574855 LHX6Q9UPM6 363 aa8.48□□□□□ -1.05
NUP88-209ENST00000574855 KDM4FA0A1W2PPD8 638 aa8.47□□□□□ -1.05
NUP88-209ENST00000574855 CAMK2BQ13554 666 aa8.47□□□□□ -1.05
NUP88-209ENST00000574855 PSDA5PKW4 1024 aaPredicted RBP8.46□□□□□ -1.06
NUP88-209ENST00000574855 EMILIN3Q9NT22 766 aa8.46□□□□□ -1.06
NUP88-209ENST00000574855 E2F4Q16254 413 aa8.44□□□□□ -1.06
NUP88-209ENST00000574855 ZNF687Q8N1G0 1237 aa8.44□□□□□ -1.06
NUP88-209ENST00000574855 EVI5O60447 810 aa8.43□□□□□ -1.06
NUP88-209ENST00000574855 ANO8Q9HCE9 1232 aaPredicted RBP8.42□□□□□ -1.06
NUP88-209ENST00000574855 HAP1P54257 671 aaPredicted RBP8.4□□□□□ -1.06
NUP88-209ENST00000574855 PPP4R3BQ5MIZ7 849 aa8.4□□□□□ -1.06
NUP88-209ENST00000574855 DPYSL4O14531 572 aa8.39□□□□□ -1.07
NUP88-209ENST00000574855 KRTAP3-3Q9BYR6 98 aa8.38□□□□□ -1.07
NUP88-209ENST00000574855 KRTAP3-2Q9BYR7 98 aa8.38□□□□□ -1.07
NUP88-209ENST00000574855 ZNF454Q8N9F8 522 aa8.37□□□□□ -1.07
NUP88-209ENST00000574855 PBX2P40425 430 aa8.36□□□□□ -1.07
NUP88-209ENST00000574855 ARIH1Q9Y4X5 557 aaPredicted RBP8.36□□□□□ -1.07
NUP88-209ENST00000574855 FOSBP53539 338 aa8.35□□□□□ -1.07
NUP88-209ENST00000574855 JPH4Q96JJ6 628 aa8.35□□□□□ -1.07
NUP88-209ENST00000574855 SPDYE16A6NNV3 312 aaPredicted RBP8.34□□□□□ -1.07
NUP88-209ENST00000574855 ARHGAP33O14559 1287 aa8.34□□□□□ -1.07
NUP88-209ENST00000574855 KCNH8Q96L42 1107 aa8.33□□□□□ -1.08
NUP88-209ENST00000574855 PTGER2P43116 358 aa8.32□□□□□ -1.08
NUP88-209ENST00000574855 PDIA6Q15084 440 aa8.32□□□□□ -1.08
NUP88-209ENST00000574855 ZDHHC16Q969W1 377 aa8.32□□□□□ -1.08
NUP88-209ENST00000574855 AXIN2Q9Y2T1 843 aa8.32□□□□□ -1.08
NUP88-209ENST00000574855 PHF14O94880 888 aa8.31□□□□□ -1.08
NUP88-209ENST00000574855 POTEEQ6S8J3 1075 aa8.31□□□□□ -1.08
NUP88-209ENST00000574855 ANKRD13DQ6ZTN6 518 aa8.31□□□□□ -1.08
NUP88-209ENST00000574855 ARHGEF1Q92888 912 aaKnown RBP8.31□□□□□ -1.08
NUP88-209ENST00000574855 LSM11P83369 360 aaKnown RBP eCLIP8.3□□□□□ -1.08
NUP88-209ENST00000574855 P3H3Q8IVL6 736 aa8.3□□□□□ -1.08
NUP88-209ENST00000574855 BCL2L12Q9HB09 334 aa8.3□□□□□ -1.08
NUP88-209ENST00000574855 PCDHGA10Q9Y5H3 936 aa8.3□□□□□ -1.08
NUP88-209ENST00000574855 DDX12PQ92771 950 aa8.29□□□□□ -1.08
NUP88-209ENST00000574855 FBXW7Q969H0 707 aa8.29□□□□□ -1.08
NUP88-209ENST00000574855 PTPREP23469 700 aa8.28□□□□□ -1.08
NUP88-209ENST00000574855 PSEN2P49810 448 aa8.28□□□□□ -1.08
NUP88-209ENST00000574855 TYW1BQ6NUM6 668 aa8.28□□□□□ -1.08
NUP88-209ENST00000574855 KCNV2Q8TDN2 545 aa8.28□□□□□ -1.08
NUP88-209ENST00000574855 KCNK17Q96T54 332 aa8.28□□□□□ -1.08
NUP88-209ENST00000574855 EPAS1Q99814 870 aa8.28□□□□□ -1.08
NUP88-209ENST00000574855 VSIG10Q8N0Z9 540 aa8.27□□□□□ -1.09
NUP88-209ENST00000574855 ADAM33Q9BZ11 813 aa8.27□□□□□ -1.09
NUP88-209ENST00000574855 KDM2AQ9Y2K7 1162 aa8.26□□□□□ -1.09
NUP88-209ENST00000574855 DMRTA1Q5VZB9 504 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms