RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SIGLEC1Q9BZZ2 1709 aa34.78■■■■□ 3.16
VPS53-216ENST00000574029 CDK11AQ9UQ88 783 aaPredicted RBP34.77■■■■□ 3.16
VPS53-216ENST00000574029 POGZQ7Z3K3 1410 aa34.77■■■■□ 3.16
VPS53-216ENST00000574029 KIF14Q15058 1648 aa34.74■■■■□ 3.15
VPS53-216ENST00000574029 LRRIQ1Q96JM4 1722 aa34.74■■■■□ 3.15
VPS53-216ENST00000574029 TROQ12816 1431 aaPredicted RBP34.72■■■■□ 3.15
VPS53-216ENST00000574029 PCF11O94913 1555 aaKnown RBP34.71■■■■□ 3.15
VPS53-216ENST00000574029 EFCAB2Q5VUJ9 269 aa34.71■■■■□ 3.15
VPS53-216ENST00000574029 LMTK3Q96Q04 1460 aa34.69■■■■□ 3.14
VPS53-216ENST00000574029 CLIP1P30622 1438 aa34.64■■■■□ 3.14
VPS53-216ENST00000574029 ATP10AO60312 1499 aa34.62■■■■□ 3.13
VPS53-216ENST00000574029 ARHGAP5Q13017 1502 aa34.6■■■■□ 3.13
VPS53-216ENST00000574029 FER1L4A9Z1Z3 1794 aa34.59■■■■□ 3.13
VPS53-216ENST00000574029 ZNF518AQ6AHZ1 1483 aa34.58■■■■□ 3.13
VPS53-216ENST00000574029 C9orf84Q5VXU9 1444 aa34.57■■■■□ 3.13
VPS53-216ENST00000574029 CASKIN1Q8WXD9 1431 aa34.57■■■■□ 3.13
VPS53-216ENST00000574029 MLECQ14165 292 aa34.56■■■■□ 3.12
VPS53-216ENST00000574029 KDM5CP41229 1560 aa34.56■■■■□ 3.12
VPS53-216ENST00000574029 CDC42BPBQ9Y5S2 1711 aa34.55■■■■□ 3.12
VPS53-216ENST00000574029 CCDC18Q5T9S5 1454 aa34.54■■■■□ 3.12
VPS53-216ENST00000574029 ARHGEF12Q9NZN5 1544 aa34.54■■■■□ 3.12
VPS53-216ENST00000574029 PREX2Q70Z35 1606 aa34.49■■■■□ 3.11
VPS53-216ENST00000574029 PLPPR3Q6T4P5 718 aa34.49■■■■□ 3.11
VPS53-216ENST00000574029 AFAP1Q8N556 730 aa34.49■■■■□ 3.11
VPS53-216ENST00000574029 FBXO41Q8TF61 875 aa34.45■■■■□ 3.11
VPS53-216ENST00000574029 HSPA2P54652 639 aa34.43■■■■□ 3.1
VPS53-216ENST00000574029 DIP2CQ9Y2E4 1556 aa34.43■■■■□ 3.1
VPS53-216ENST00000574029 ABCC1P33527 1531 aa34.42■■■■□ 3.1
VPS53-216ENST00000574029 FYCO1Q9BQS8 1478 aa34.42■■■■□ 3.1
VPS53-216ENST00000574029 REREQ9P2R6 1566 aa34.41■■■■□ 3.1
VPS53-216ENST00000574029 MLH3Q9UHC1 1453 aa34.41■■■■□ 3.1
VPS53-216ENST00000574029 CDC42BPAQ5VT25 1732 aa34.39■■■■□ 3.1
VPS53-216ENST00000574029 ITSN2Q9NZM3 1697 aa34.39■■■■□ 3.1
VPS53-216ENST00000574029 ABCA6Q8N139 1617 aa34.37■■■■□ 3.09
VPS53-216ENST00000574029 TRAPPC8Q9Y2L5 1435 aa34.37■■■■□ 3.09
VPS53-216ENST00000574029 MYT1LQ9UL68 1186 aa34.35■■■■□ 3.09
VPS53-216ENST00000574029 PREX1Q8TCU6 1659 aa34.34■■■■□ 3.09
VPS53-216ENST00000574029 CEBPAP49715 358 aaPredicted RBP34.29■■■■□ 3.08
VPS53-216ENST00000574029 AGLP35573 1532 aa34.29■■■■□ 3.08
VPS53-216ENST00000574029 KIDINS220Q9ULH0 1771 aa34.28■■■■□ 3.08
VPS53-216ENST00000574029 SAMD9LQ8IVG5 1584 aa34.23■■■■□ 3.07
VPS53-216ENST00000574029 GPATCH8Q9UKJ3 1502 aaKnown RBP34.23■■■■□ 3.07
VPS53-216ENST00000574029 C3P01024 1663 aa34.19■■■■□ 3.06
VPS53-216ENST00000574029 SETD1BQ9UPS6 1966 aaKnown RBP34.18■■■■□ 3.06
VPS53-216ENST00000574029 SYCP2Q9BX26 1530 aa34.16■■■■□ 3.06
VPS53-216ENST00000574029 ZNF777Q9ULD5 760 aaPredicted RBP34.16■■■■□ 3.06
VPS53-216ENST00000574029 UHRF1BP1Q6BDS2 1440 aa34.15■■■■□ 3.06
VPS53-216ENST00000574029 STRCQ7RTU9 1775 aa34.12■■■■□ 3.05
VPS53-216ENST00000574029 ESF1Q9H501 851 aaKnown RBP34.1■■■■□ 3.05
VPS53-216ENST00000574029 KIAA1107Q9UPP5 1409 aa34.1■■■■□ 3.05
VPS53-216ENST00000574029 HNRNPMP52272 730 aaKnown RBP eCLIP34.09■■■■□ 3.053e-6■■■□□ 17.4
VPS53-216ENST00000574029 PLEKHH2Q8IVE3 1493 aa34.08■■■■□ 3.05
VPS53-216ENST00000574029 SPAG9O60271 1321 aaKnown RBP34.07■■■■□ 3.05
VPS53-216ENST00000574029 CNTLNQ9NXG0 1405 aa34.07■■■■□ 3.04
VPS53-216ENST00000574029 CERKQ8TCT0 537 aa34.07■■■■□ 3.04
VPS53-216ENST00000574029 CFDP1Q9UEE9 299 aaPredicted RBP34.07■■■■□ 3.04
VPS53-216ENST00000574029 CCNB3Q8WWL7 1395 aa34.07■■■■□ 3.04
VPS53-216ENST00000574029 MTUS2Q5JR59 1369 aa34.05■■■■□ 3.04
VPS53-216ENST00000574029 ATP7AQ04656 1500 aa34.04■■■■□ 3.04
VPS53-216ENST00000574029 INO80Q9ULG1 1556 aaPredicted RBP34.04■■■■□ 3.04
VPS53-216ENST00000574029 DMRT2Q9Y5R5 561 aa34.02■■■■□ 3.04
VPS53-216ENST00000574029 MROH2AA6NES4 1674 aa34.02■■■■□ 3.04
VPS53-216ENST00000574029 SUPT6HQ7KZ85 1726 aaKnown RBP34.01■■■■□ 3.04
VPS53-216ENST00000574029 PLXNC1O60486 1568 aa33.99■■■■□ 3.03
VPS53-216ENST00000574029 EHBP1L1Q8N3D4 1523 aa33.98■■■■□ 3.03
VPS53-216ENST00000574029 TIAM1Q13009 1591 aa33.98■■■■□ 3.03
VPS53-216ENST00000574029 A2MP01023 1474 aa33.95■■■■□ 3.02
VPS53-216ENST00000574029 NPATQ14207 1427 aa33.93■■■■□ 3.02
VPS53-216ENST00000574029 CEP162Q5TB80 1403 aa33.92■■■■□ 3.02
VPS53-216ENST00000574029 PTPRTO14522 1441 aa33.91■■■■□ 3.02
VPS53-216ENST00000574029 ZMYM3Q14202 1370 aa33.91■■■■□ 3.02
VPS53-216ENST00000574029 ADGBQ8N7X0 1667 aa33.9■■■■□ 3.02
VPS53-216ENST00000574029 CLTCQ00610 1675 aaKnown RBP33.89■■■■□ 3.02
VPS53-216ENST00000574029 ZNF644Q9H582 1327 aaPredicted RBP33.88■■■■□ 3.01
VPS53-216ENST00000574029 MBD5Q9P267 1494 aa33.88■■■■□ 3.01
VPS53-216ENST00000574029 NCOA1Q15788 1441 aa33.84■■■■□ 3.01
VPS53-216ENST00000574029 RTEL1-TNFRSF6BF6WH68 1400 aa33.81■■■■□ 3
VPS53-216ENST00000574029 CAMSAP1Q5T5Y3 1602 aa33.79■■■■□ 3
VPS53-216ENST00000574029 GGT6Q6P531 493 aa33.78■■■■□ 3
VPS53-216ENST00000574029 PPP6R1Q9UPN7 881 aa33.77■■■■□ 3
VPS53-216ENST00000574029 PTPRKQ15262 1439 aa33.76■■■□□ 2.99
VPS53-216ENST00000574029 NCOA2Q15596 1464 aa33.76■■■□□ 2.99
VPS53-216ENST00000574029 MYO3AQ8NEV4 1616 aa33.75■■■□□ 2.99
VPS53-216ENST00000574029 ZNF142P52746 1687 aaPredicted RBP33.75■■■□□ 2.99
VPS53-216ENST00000574029 LTBP4Q8N2S1 1624 aa33.73■■■□□ 2.99
VPS53-216ENST00000574029 DHX29Q7Z478 1369 aaKnown RBP33.71■■■□□ 2.99
VPS53-216ENST00000574029 CAMSAP2Q08AD1 1489 aa33.7■■■□□ 2.99
VPS53-216ENST00000574029 CCDC141Q6ZP82 1450 aa33.7■■■□□ 2.99
VPS53-216ENST00000574029 CEP170BQ9Y4F5 1589 aaPredicted RBP33.68■■■□□ 2.98
VPS53-216ENST00000574029 RSPH4AQ5TD94 716 aa33.66■■■□□ 2.98
VPS53-216ENST00000574029 PLA2R1Q13018 1463 aa33.65■■■□□ 2.98
VPS53-216ENST00000574029 NCKAP5LQ9HCH0 1330 aa33.63■■■□□ 2.97
VPS53-216ENST00000574029 IQSEC2Q5JU85 1478 aa33.62■■■□□ 2.97
VPS53-216ENST00000574029 ARHGEF5Q12774 1597 aa33.61■■■□□ 2.97
VPS53-216ENST00000574029 VPS8Q8N3P4 1428 aa33.6■■■□□ 2.97
VPS53-216ENST00000574029 TCOF1Q13428 1488 aaKnown RBP33.59■■■□□ 2.97
VPS53-216ENST00000574029 FAM135AQ9P2D6 1515 aa33.58■■■□□ 2.97
VPS53-216ENST00000574029 KIF3BO15066 747 aa33.58■■■□□ 2.97
VPS53-216ENST00000574029 PKD2Q13563 968 aa33.58■■■□□ 2.97
VPS53-216ENST00000574029 LRRC9Q6ZRR7 1453 aa33.57■■■□□ 2.97
Retrieved 100 of 20,778 RNA–protein pairs in 12.2 ms