RNA–Protein interactions for RNA: ENST00000573867.1

SCARF1-207, Transcript of scavenger receptor class F member 1, humanhuman

TSL 2

Gene SCARF1, Length 939 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCARF1-207ENST00000573867 MTUS2Q5JR59 1369 aa44.22■■■■■ 4.67
SCARF1-207ENST00000573867 KDM4FA0A1W2PPD8 638 aa44.22■■■■■ 4.67
SCARF1-207ENST00000573867 SCAPERQ9BY12 1400 aa44.21■■■■■ 4.67
SCARF1-207ENST00000573867 CDC42BPAQ5VT25 1732 aa44.2■■■■■ 4.67
SCARF1-207ENST00000573867 EHBP1L1Q8N3D4 1523 aa44.17■■■■■ 4.66
SCARF1-207ENST00000573867 POGZQ7Z3K3 1410 aa44.15■■■■■ 4.66
SCARF1-207ENST00000573867 TIAM1Q13009 1591 aa44.14■■■■■ 4.66
SCARF1-207ENST00000573867 GPATCH8Q9UKJ3 1502 aaKnown RBP44.13■■■■■ 4.65
SCARF1-207ENST00000573867 ZMYM4Q5VZL5 1548 aa44.12■■■■■ 4.65
SCARF1-207ENST00000573867 AEBP2Q6ZN18 517 aaPredicted RBP44.1■■■■■ 4.65
SCARF1-207ENST00000573867 ARHGEF40Q8TER5 1519 aa44.05■■■■■ 4.64
SCARF1-207ENST00000573867 ABCC1P33527 1531 aa44.04■■■■■ 4.64
SCARF1-207ENST00000573867 ARHGEF12Q9NZN5 1544 aa44.04■■■■■ 4.64
SCARF1-207ENST00000573867 YEATS2Q9ULM3 1422 aa44■■■■■ 4.63
SCARF1-207ENST00000573867 CCNB3Q8WWL7 1395 aa44■■■■■ 4.63
SCARF1-207ENST00000573867 SAMD9LQ8IVG5 1584 aa43.98■■■■■ 4.63
SCARF1-207ENST00000573867 ZFYVE16Q7Z3T8 1539 aa43.97■■■■■ 4.63
SCARF1-207ENST00000573867 ZNF518AQ6AHZ1 1483 aa43.96■■■■■ 4.63
SCARF1-207ENST00000573867 LRRC9Q6ZRR7 1453 aa43.96■■■■■ 4.63
SCARF1-207ENST00000573867 MAGI2Q86UL8 1455 aa43.96■■■■■ 4.63
SCARF1-207ENST00000573867 MAP3K1Q13233 1512 aa43.95■■■■■ 4.63
SCARF1-207ENST00000573867 AFAP1Q8N556 730 aa43.95■■■■■ 4.63
SCARF1-207ENST00000573867 KDM5CP41229 1560 aa43.94■■■■■ 4.62
SCARF1-207ENST00000573867 ITSN2Q9NZM3 1697 aa43.94■■■■■ 4.62
SCARF1-207ENST00000573867 TRAPPC8Q9Y2L5 1435 aa43.93■■■■■ 4.62
SCARF1-207ENST00000573867 NCOA2Q15596 1464 aa43.93■■■■■ 4.62
SCARF1-207ENST00000573867 ZNF777Q9ULD5 760 aaPredicted RBP43.91■■■■■ 4.62
SCARF1-207ENST00000573867 SUPT6HQ7KZ85 1726 aaKnown RBP43.9■■■■■ 4.62
SCARF1-207ENST00000573867 KANK4Q5T7N3 995 aaPredicted RBP43.9■■■■■ 4.62
SCARF1-207ENST00000573867 CFDP1Q9UEE9 299 aaPredicted RBP43.89■■■■■ 4.62
SCARF1-207ENST00000573867 SYCP2Q9BX26 1530 aa43.85■■■■■ 4.61
SCARF1-207ENST00000573867 SIGLEC1Q9BZZ2 1709 aa43.85■■■■■ 4.61
SCARF1-207ENST00000573867 HECW2Q9P2P5 1572 aa43.8■■■■■ 4.6
SCARF1-207ENST00000573867 ZNF644Q9H582 1327 aaPredicted RBP43.78■■■■■ 4.6
SCARF1-207ENST00000573867 KIAA1107Q9UPP5 1409 aa43.77■■■■■ 4.6
SCARF1-207ENST00000573867 HNRNPMP52272 730 aaKnown RBP eCLIP43.77■■■■■ 4.6
SCARF1-207ENST00000573867 MLH3Q9UHC1 1453 aa43.76■■■■■ 4.6
SCARF1-207ENST00000573867 PLEKHH2Q8IVE3 1493 aa43.75■■■■■ 4.59
SCARF1-207ENST00000573867 ATP10AO60312 1499 aa43.74■■■■■ 4.59
SCARF1-207ENST00000573867 ARID4BQ4LE39 1312 aaPredicted RBP43.73■■■■■ 4.59
SCARF1-207ENST00000573867 BCORL1Q5H9F3 1711 aa43.73■■■■■ 4.59
SCARF1-207ENST00000573867 ADAMTSL3P82987 1691 aa43.72■■■■■ 4.59
SCARF1-207ENST00000573867 DIP2CQ9Y2E4 1556 aa43.71■■■■■ 4.59
SCARF1-207ENST00000573867 ABCA6Q8N139 1617 aa43.7■■■■■ 4.59
SCARF1-207ENST00000573867 C9orf84Q5VXU9 1444 aa43.69■■■■■ 4.58
SCARF1-207ENST00000573867 KIDINS220Q9ULH0 1771 aa43.67■■■■■ 4.58
SCARF1-207ENST00000573867 MBD5Q9P267 1494 aa43.65■■■■■ 4.58
SCARF1-207ENST00000573867 MYT1LQ9UL68 1186 aa43.64■■■■■ 4.58
SCARF1-207ENST00000573867 APLP2Q06481 763 aa43.63■■■■■ 4.57
SCARF1-207ENST00000573867 CAMSAP2Q08AD1 1489 aa43.61■■■■■ 4.57
SCARF1-207ENST00000573867 MADDQ8WXG6 1647 aa43.59■■■■■ 4.57
SCARF1-207ENST00000573867 REREQ9P2R6 1566 aa43.57■■■■■ 4.57
SCARF1-207ENST00000573867 SPAG9O60271 1321 aaKnown RBP43.56■■■■■ 4.56
SCARF1-207ENST00000573867 INO80Q9ULG1 1556 aaPredicted RBP43.55■■■■■ 4.56
SCARF1-207ENST00000573867 MYOM3Q5VTT5 1437 aa43.53■■■■■ 4.56
SCARF1-207ENST00000573867 ATP7AQ04656 1500 aa43.53■■■■■ 4.56
SCARF1-207ENST00000573867 MLECQ14165 292 aa43.49■■■■■ 4.55
SCARF1-207ENST00000573867 PTPRMP28827 1452 aa43.49■■■■■ 4.55
SCARF1-207ENST00000573867 MIA2Q96PC5 1412 aa43.44■■■■■ 4.54
SCARF1-207ENST00000573867 CCDC141Q6ZP82 1450 aa43.44■■■■■ 4.54
SCARF1-207ENST00000573867 RIMS1Q86UR5 1692 aaKnown RBP43.43■■■■■ 4.54
SCARF1-207ENST00000573867 AGLP35573 1532 aa43.42■■■■■ 4.54
SCARF1-207ENST00000573867 ARHGEF5Q12774 1597 aa43.4■■■■■ 4.54
SCARF1-207ENST00000573867 RTEL1-TNFRSF6BF6WH68 1400 aa43.35■■■■■ 4.53
SCARF1-207ENST00000573867 FER1L4A9Z1Z3 1794 aa43.34■■■■■ 4.53
SCARF1-207ENST00000573867 PLXNC1O60486 1568 aa43.33■■■■■ 4.53
SCARF1-207ENST00000573867 A2MP01023 1474 aa43.32■■■■■ 4.52
SCARF1-207ENST00000573867 RSPH4AQ5TD94 716 aa43.31■■■■■ 4.52
SCARF1-207ENST00000573867 PTPN23Q9H3S7 1636 aa43.27■■■■■ 4.52
SCARF1-207ENST00000573867 FGD6Q6ZV73 1430 aa43.27■■■■■ 4.52
SCARF1-207ENST00000573867 ADGBQ8N7X0 1667 aa43.25■■■■■ 4.51
SCARF1-207ENST00000573867 TCOF1Q13428 1488 aaKnown RBP43.2■■■■■ 4.51
SCARF1-207ENST00000573867 MAST1Q9Y2H9 1570 aa43.19■■■■■ 4.5
SCARF1-207ENST00000573867 TSPY4P0CV99 314 aa43.16■■■■■ 4.5
SCARF1-207ENST00000573867 TSPY10P0CW01 314 aa43.16■■■■■ 4.5
SCARF1-207ENST00000573867 PLPPR3Q6T4P5 718 aa43.15■■■■■ 4.5
SCARF1-207ENST00000573867 DHX29Q7Z478 1369 aaKnown RBP43.15■■■■■ 4.5
SCARF1-207ENST00000573867 ABCC5O15440 1437 aa43.12■■■■■ 4.49
SCARF1-207ENST00000573867 CEBPAP49715 358 aaPredicted RBP43.08■■■■■ 4.49
SCARF1-207ENST00000573867 PPARGC1BQ86YN6 1023 aaKnown RBP43.08■■■■■ 4.49
SCARF1-207ENST00000573867 CROCC2H7BZ55 1655 aa43.07■■■■■ 4.49
SCARF1-207ENST00000573867 DNMT1P26358 1616 aaKnown RBP43.05■■■■■ 4.48
SCARF1-207ENST00000573867 DAPK1P53355 1430 aa43.05■■■■■ 4.48
SCARF1-207ENST00000573867 SHANK2Q9UPX8 1470 aa43.02■■■■■ 4.48
SCARF1-207ENST00000573867 GGT6Q6P531 493 aa43■■■■■ 4.47
SCARF1-207ENST00000573867 C3P01024 1663 aa42.99■■■■■ 4.47
SCARF1-207ENST00000573867 CNTLNQ9NXG0 1405 aa42.98■■■■■ 4.47
SCARF1-207ENST00000573867 LMTK3Q96Q04 1460 aa42.98■■■■■ 4.47
SCARF1-207ENST00000573867 ESF1Q9H501 851 aaKnown RBP42.96■■■■■ 4.47
SCARF1-207ENST00000573867 KIF3BO15066 747 aa42.95■■■■■ 4.47
SCARF1-207ENST00000573867 CLTCQ00610 1675 aaKnown RBP42.92■■■■■ 4.46
SCARF1-207ENST00000573867 MROH2AA6NES4 1674 aa42.92■■■■■ 4.46
SCARF1-207ENST00000573867 FAM50AQ14320 339 aaKnown RBP42.91■■■■■ 4.46
SCARF1-207ENST00000573867 ZMYM3Q14202 1370 aa42.86■■■■■ 4.45
SCARF1-207ENST00000573867 KIF15Q9NS87 1388 aa42.86■■■■■ 4.45
SCARF1-207ENST00000573867 DUOX2Q9NRD8 1548 aa42.85■■■■■ 4.45
SCARF1-207ENST00000573867 CHIC2Q9UKJ5 165 aa42.83■■■■■ 4.45
SCARF1-207ENST00000573867 PPP6R1Q9UPN7 881 aa42.83■■■■■ 4.45
SCARF1-207ENST00000573867 RRP7BPQ9NSQ0 103 aa42.82■■■■■ 4.45
SCARF1-207ENST00000573867 EIF2AK4Q9P2K8 1649 aaKnown RBP42.81■■■■■ 4.44
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms