RNA–Protein interactions for RNA: ENST00000573827.1

SMG6-214, Transcript of SMG6, nonsense mediated mRNA decay factor, humanhuman

TSL 3

Gene SMG6, Length 601 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMG6-214ENST00000573827 ADAMTSL3P82987 1691 aa28.26■■■□□ 2.11
SMG6-214ENST00000573827 YEATS2Q9ULM3 1422 aa28.25■■■□□ 2.11
SMG6-214ENST00000573827 CEP162Q5TB80 1403 aa28.24■■■□□ 2.11
SMG6-214ENST00000573827 MAGI2Q86UL8 1455 aa28.23■■■□□ 2.11
SMG6-214ENST00000573827 CDC42BPBQ9Y5S2 1711 aa28.22■■■□□ 2.11
SMG6-214ENST00000573827 ARHGAP5Q13017 1502 aa28.21■■■□□ 2.11
SMG6-214ENST00000573827 ZFYVE16Q7Z3T8 1539 aa28.21■■■□□ 2.11
SMG6-214ENST00000573827 BCORL1Q5H9F3 1711 aa28.2■■■□□ 2.1
SMG6-214ENST00000573827 SIGLEC1Q9BZZ2 1709 aa28.2■■■□□ 2.1
SMG6-214ENST00000573827 PREX2Q70Z35 1606 aa28.19■■■□□ 2.1
SMG6-214ENST00000573827 KDM5CP41229 1560 aa28.16■■■□□ 2.1
SMG6-214ENST00000573827 ARHGEF12Q9NZN5 1544 aa28.14■■■□□ 2.1
SMG6-214ENST00000573827 CDC42BPAQ5VT25 1732 aa28.13■■■□□ 2.09
SMG6-214ENST00000573827 PTPRMP28827 1452 aa28.13■■■□□ 2.09
SMG6-214ENST00000573827 ZNF518AQ6AHZ1 1483 aa28.13■■■□□ 2.09
SMG6-214ENST00000573827 ABCC1P33527 1531 aa28.12■■■□□ 2.09
SMG6-214ENST00000573827 MADDQ8WXG6 1647 aa28.11■■■□□ 2.09
SMG6-214ENST00000573827 LOC105371045A0A1W2PR82 267 aa28.11■■■□□ 2.09
SMG6-214ENST00000573827 GPATCH8Q9UKJ3 1502 aaKnown RBP28.1■■■□□ 2.09
SMG6-214ENST00000573827 AFAP1Q8N556 730 aa28.1■■■□□ 2.09
SMG6-214ENST00000573827 ARID4BQ4LE39 1312 aaPredicted RBP28.09■■■□□ 2.09
SMG6-214ENST00000573827 TRAPPC8Q9Y2L5 1435 aa28.08■■■□□ 2.09
SMG6-214ENST00000573827 HECW2Q9P2P5 1572 aa28.07■■■□□ 2.08
SMG6-214ENST00000573827 ATP10AO60312 1499 aa28.07■■■□□ 2.08
SMG6-214ENST00000573827 ITSN2Q9NZM3 1697 aa28.03■■■□□ 2.08
SMG6-214ENST00000573827 MLH3Q9UHC1 1453 aa28.03■■■□□ 2.08
SMG6-214ENST00000573827 C9orf84Q5VXU9 1444 aa28.03■■■□□ 2.08
SMG6-214ENST00000573827 SAMD9LQ8IVG5 1584 aa28.02■■■□□ 2.08
SMG6-214ENST00000573827 MTUS2Q5JR59 1369 aa28■■■□□ 2.07
SMG6-214ENST00000573827 DIP2CQ9Y2E4 1556 aa28■■■□□ 2.07
SMG6-214ENST00000573827 EHBP1L1Q8N3D4 1523 aa27.97■■■□□ 2.07
SMG6-214ENST00000573827 RIMS1Q86UR5 1692 aaKnown RBP27.97■■■□□ 2.07
SMG6-214ENST00000573827 ABCA6Q8N139 1617 aa27.96■■■□□ 2.07
SMG6-214ENST00000573827 REREQ9P2R6 1566 aa27.96■■■□□ 2.07
SMG6-214ENST00000573827 CCNB3Q8WWL7 1395 aa27.94■■■□□ 2.06
SMG6-214ENST00000573827 TIAM1Q13009 1591 aa27.94■■■□□ 2.06
SMG6-214ENST00000573827 KIAA1107Q9UPP5 1409 aa27.93■■■□□ 2.06
SMG6-214ENST00000573827 SYCP2Q9BX26 1530 aa27.93■■■□□ 2.06
SMG6-214ENST00000573827 KIDINS220Q9ULH0 1771 aa27.93■■■□□ 2.06
SMG6-214ENST00000573827 VPS8Q8N3P4 1428 aa27.92■■■□□ 2.06
SMG6-214ENST00000573827 CFDP1Q9UEE9 299 aaPredicted RBP27.9■■■□□ 2.06
SMG6-214ENST00000573827 ZNF777Q9ULD5 760 aaPredicted RBP27.9■■■□□ 2.06
SMG6-214ENST00000573827 MLECQ14165 292 aa27.89■■■□□ 2.06
SMG6-214ENST00000573827 AGLP35573 1532 aa27.87■■■□□ 2.05
SMG6-214ENST00000573827 HNRNPMP52272 730 aaKnown RBP eCLIP27.87■■■□□ 2.05
SMG6-214ENST00000573827 PLEKHH2Q8IVE3 1493 aa27.87■■■□□ 2.05
SMG6-214ENST00000573827 FER1L4A9Z1Z3 1794 aa27.86■■■□□ 2.05
SMG6-214ENST00000573827 NCOA2Q15596 1464 aa27.84■■■□□ 2.05
SMG6-214ENST00000573827 LMTK3Q96Q04 1460 aa27.84■■■□□ 2.05
SMG6-214ENST00000573827 ZNF644Q9H582 1327 aaPredicted RBP27.84■■■□□ 2.05
SMG6-214ENST00000573827 MBD5Q9P267 1494 aa27.83■■■□□ 2.05
SMG6-214ENST00000573827 INO80Q9ULG1 1556 aaPredicted RBP27.81■■■□□ 2.04
SMG6-214ENST00000573827 SPAG9O60271 1321 aaKnown RBP27.79■■■□□ 2.04
SMG6-214ENST00000573827 MYT1LQ9UL68 1186 aa27.79■■■□□ 2.04
SMG6-214ENST00000573827 MAP3K1Q13233 1512 aa27.78■■■□□ 2.04
SMG6-214ENST00000573827 LRRC9Q6ZRR7 1453 aa27.78■■■□□ 2.04
SMG6-214ENST00000573827 SUPT6HQ7KZ85 1726 aaKnown RBP27.78■■■□□ 2.04
SMG6-214ENST00000573827 ATP7AQ04656 1500 aa27.77■■■□□ 2.04
SMG6-214ENST00000573827 PLXNC1O60486 1568 aa27.73■■■□□ 2.03
SMG6-214ENST00000573827 KANK4Q5T7N3 995 aaPredicted RBP27.72■■■□□ 2.03
SMG6-214ENST00000573827 CEBPAP49715 358 aaPredicted RBP27.7■■■□□ 2.02
SMG6-214ENST00000573827 PLPPR3Q6T4P5 718 aa27.69■■■□□ 2.02
SMG6-214ENST00000573827 CAMSAP2Q08AD1 1489 aa27.69■■■□□ 2.02
SMG6-214ENST00000573827 A2MP01023 1474 aa27.67■■■□□ 2.02
SMG6-214ENST00000573827 RTEL1-TNFRSF6BF6WH68 1400 aa27.66■■■□□ 2.02
SMG6-214ENST00000573827 HSPA2P54652 639 aa27.63■■■□□ 2.01
SMG6-214ENST00000573827 CCDC141Q6ZP82 1450 aa27.63■■■□□ 2.01
SMG6-214ENST00000573827 C3P01024 1663 aa27.62■■■□□ 2.01
SMG6-214ENST00000573827 ARHGEF5Q12774 1597 aa27.6■■■□□ 2.01
SMG6-214ENST00000573827 CNTLNQ9NXG0 1405 aa27.59■■■□□ 2.01
SMG6-214ENST00000573827 ADGBQ8N7X0 1667 aa27.59■■■□□ 2.01
SMG6-214ENST00000573827 PREX1Q8TCU6 1659 aa27.59■■■□□ 2.01
SMG6-214ENST00000573827 SETD1BQ9UPS6 1966 aaKnown RBP27.58■■■□□ 2.01
SMG6-214ENST00000573827 RSPH4AQ5TD94 716 aa27.56■■■□□ 2
SMG6-214ENST00000573827 MYOM3Q5VTT5 1437 aa27.56■■■□□ 2
SMG6-214ENST00000573827 DHX29Q7Z478 1369 aaKnown RBP27.55■■■□□ 2
SMG6-214ENST00000573827 MIA2Q96PC5 1412 aa27.54■■■□□ 2
SMG6-214ENST00000573827 MROH2AA6NES4 1674 aa27.53■■■□□ 2
SMG6-214ENST00000573827 ZMYM3Q14202 1370 aa27.5■■□□□ 1.99
SMG6-214ENST00000573827 ESF1Q9H501 851 aaKnown RBP27.49■■□□□ 1.99
SMG6-214ENST00000573827 UHRF1BP1Q6BDS2 1440 aa27.49■■□□□ 1.99
SMG6-214ENST00000573827 ILDR1Q86SU0 546 aaPredicted RBP27.48■■□□□ 1.99
SMG6-214ENST00000573827 NPATQ14207 1427 aa27.47■■□□□ 1.99
SMG6-214ENST00000573827 MAST1Q9Y2H9 1570 aa27.47■■□□□ 1.99
SMG6-214ENST00000573827 CLTCQ00610 1675 aaKnown RBP27.46■■□□□ 1.99
SMG6-214ENST00000573827 PPP6R1Q9UPN7 881 aa27.46■■□□□ 1.99
SMG6-214ENST00000573827 GGT6Q6P531 493 aa27.45■■□□□ 1.98
SMG6-214ENST00000573827 PTPRKQ15262 1439 aa27.42■■□□□ 1.98
SMG6-214ENST00000573827 STRCQ7RTU9 1775 aa27.41■■□□□ 1.98
SMG6-214ENST00000573827 TSPY4P0CV99 314 aa27.41■■□□□ 1.98
SMG6-214ENST00000573827 TSPY10P0CW01 314 aa27.41■■□□□ 1.98
SMG6-214ENST00000573827 KIF3BO15066 747 aa27.38■■□□□ 1.97
SMG6-214ENST00000573827 APLP2Q06481 763 aa27.37■■□□□ 1.97
SMG6-214ENST00000573827 FGD6Q6ZV73 1430 aa27.36■■□□□ 1.97
SMG6-214ENST00000573827 TCOF1Q13428 1488 aaKnown RBP27.36■■□□□ 1.97
SMG6-214ENST00000573827 FAM135AQ9P2D6 1515 aa27.36■■□□□ 1.97
SMG6-214ENST00000573827 ABCC5O15440 1437 aa27.35■■□□□ 1.97
SMG6-214ENST00000573827 PTPN23Q9H3S7 1636 aa27.35■■□□□ 1.97
SMG6-214ENST00000573827 SHANK2Q9UPX8 1470 aa27.32■■□□□ 1.96
SMG6-214ENST00000573827 KDM5DQ9BY66 1539 aa27.31■■□□□ 1.96
Retrieved 100 of 20,778 RNA–protein pairs in 212.8 ms