RNA–Protein interactions for RNA: ENST00000572750.1

CHD3-215, Transcript of chromodomain helicase DNA binding protein 3, humanhuman

TSL 3

Gene CHD3, Length 750 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD3-215ENST00000572750 MTUS2Q5JR59 1369 aa25.05■■□□□ 1.6
CHD3-215ENST00000572750 MADDQ8WXG6 1647 aa25.05■■□□□ 1.6
CHD3-215ENST00000572750 FANCAO15360 1455 aa25.05■■□□□ 1.6
CHD3-215ENST00000572750 NEO1Q92859 1461 aa25.05■■□□□ 1.6
CHD3-215ENST00000572750 CDC42BPAQ5VT25 1732 aa25.05■■□□□ 1.6
CHD3-215ENST00000572750 BCORL1Q5H9F3 1711 aa25.04■■□□□ 1.6
CHD3-215ENST00000572750 CDC42BPBQ9Y5S2 1711 aa25.03■■□□□ 1.6
CHD3-215ENST00000572750 PLCH2O75038 1416 aa25.03■■□□□ 1.6
CHD3-215ENST00000572750 ARHGAP5Q13017 1502 aa25.01■■□□□ 1.59
CHD3-215ENST00000572750 HSPA2P54652 639 aa25■■□□□ 1.59
CHD3-215ENST00000572750 MAP3K1Q13233 1512 aa24.99■■□□□ 1.59
CHD3-215ENST00000572750 CERKQ8TCT0 537 aa24.99■■□□□ 1.59
CHD3-215ENST00000572750 DISP3Q9P2K9 1392 aa24.99■■□□□ 1.59
CHD3-215ENST00000572750 SUPT6HQ7KZ85 1726 aaKnown RBP24.98■■□□□ 1.59
CHD3-215ENST00000572750 FRMPD1Q5SYB0 1578 aa24.97■■□□□ 1.59
CHD3-215ENST00000572750 LRRC9Q6ZRR7 1453 aa24.97■■□□□ 1.59
CHD3-215ENST00000572750 RAPGEF3O95398 923 aa24.97■■□□□ 1.59
CHD3-215ENST00000572750 AKNAQ7Z591 1439 aa24.95■■□□□ 1.59
CHD3-215ENST00000572750 PHLDB1Q86UU1 1377 aa24.94■■□□□ 1.58
CHD3-215ENST00000572750 RICTORQ6R327 1708 aa24.94■■□□□ 1.58
CHD3-215ENST00000572750 ITSN2Q9NZM3 1697 aa24.93■■□□□ 1.58
CHD3-215ENST00000572750 GPATCH8Q9UKJ3 1502 aaKnown RBP24.91■■□□□ 1.58
CHD3-215ENST00000572750 RIMS1Q86UR5 1692 aaKnown RBP24.91■■□□□ 1.58
CHD3-215ENST00000572750 NCOA2Q15596 1464 aa24.91■■□□□ 1.58
CHD3-215ENST00000572750 CCNB3Q8WWL7 1395 aa24.88■■□□□ 1.57
CHD3-215ENST00000572750 DENND4BO75064 1496 aaPredicted RBP24.88■■□□□ 1.57
CHD3-215ENST00000572750 SAMD9LQ8IVG5 1584 aa24.88■■□□□ 1.57
CHD3-215ENST00000572750 ABCC1P33527 1531 aa24.87■■□□□ 1.57
CHD3-215ENST00000572750 KANK4Q5T7N3 995 aaPredicted RBP24.87■■□□□ 1.57
CHD3-215ENST00000572750 EFCAB2Q5VUJ9 269 aa24.86■■□□□ 1.57
CHD3-215ENST00000572750 POGZQ7Z3K3 1410 aa24.85■■□□□ 1.57
CHD3-215ENST00000572750 ARID4BQ4LE39 1312 aaPredicted RBP24.85■■□□□ 1.57
CHD3-215ENST00000572750 APLP2Q06481 763 aa24.84■■□□□ 1.57
CHD3-215ENST00000572750 SCAPERQ9BY12 1400 aa24.84■■□□□ 1.57
CHD3-215ENST00000572750 ZMYM4Q5VZL5 1548 aa24.81■■□□□ 1.56
CHD3-215ENST00000572750 SIGLEC1Q9BZZ2 1709 aa24.8■■□□□ 1.56
CHD3-215ENST00000572750 SYCP2Q9BX26 1530 aa24.8■■□□□ 1.56
CHD3-215ENST00000572750 ARHGEF12Q9NZN5 1544 aa24.79■■□□□ 1.56
CHD3-215ENST00000572750 ARHGEF40Q8TER5 1519 aa24.78■■□□□ 1.56
CHD3-215ENST00000572750 PLPPR3Q6T4P5 718 aa24.78■■□□□ 1.56
CHD3-215ENST00000572750 ZNF777Q9ULD5 760 aaPredicted RBP24.77■■□□□ 1.56
CHD3-215ENST00000572750 ZNF518AQ6AHZ1 1483 aa24.77■■□□□ 1.56
CHD3-215ENST00000572750 KDM5CP41229 1560 aa24.76■■□□□ 1.55
CHD3-215ENST00000572750 CFDP1Q9UEE9 299 aaPredicted RBP24.76■■□□□ 1.55
CHD3-215ENST00000572750 SPATA31D1Q6ZQQ2 1576 aa24.76■■□□□ 1.55
CHD3-215ENST00000572750 ZFYVE16Q7Z3T8 1539 aa24.72■■□□□ 1.55
CHD3-215ENST00000572750 CAMSAP2Q08AD1 1489 aa24.72■■□□□ 1.55
CHD3-215ENST00000572750 TRAPPC8Q9Y2L5 1435 aa24.72■■□□□ 1.55
CHD3-215ENST00000572750 PLEKHH2Q8IVE3 1493 aa24.71■■□□□ 1.55
CHD3-215ENST00000572750 MYOM3Q5VTT5 1437 aa24.7■■□□□ 1.55
CHD3-215ENST00000572750 YEATS2Q9ULM3 1422 aa24.69■■□□□ 1.54
CHD3-215ENST00000572750 ZNF644Q9H582 1327 aaPredicted RBP24.68■■□□□ 1.54
CHD3-215ENST00000572750 MAGI2Q86UL8 1455 aa24.67■■□□□ 1.54
CHD3-215ENST00000572750 KIAA1107Q9UPP5 1409 aa24.67■■□□□ 1.54
CHD3-215ENST00000572750 AFAP1Q8N556 730 aa24.66■■□□□ 1.54
CHD3-215ENST00000572750 ABCA6Q8N139 1617 aa24.65■■□□□ 1.54
CHD3-215ENST00000572750 STRCQ7RTU9 1775 aa24.64■■□□□ 1.53
CHD3-215ENST00000572750 KIDINS220Q9ULH0 1771 aa24.63■■□□□ 1.53
CHD3-215ENST00000572750 HNRNPMP52272 730 aaKnown RBP eCLIP24.63■■□□□ 1.53
CHD3-215ENST00000572750 INO80Q9ULG1 1556 aaPredicted RBP24.63■■□□□ 1.53
CHD3-215ENST00000572750 DIP2CQ9Y2E4 1556 aa24.63■■□□□ 1.53
CHD3-215ENST00000572750 MBD5Q9P267 1494 aa24.62■■□□□ 1.53
CHD3-215ENST00000572750 MIA2Q96PC5 1412 aa24.61■■□□□ 1.53
CHD3-215ENST00000572750 PTPN23Q9H3S7 1636 aa24.61■■□□□ 1.53
CHD3-215ENST00000572750 MLH3Q9UHC1 1453 aa24.61■■□□□ 1.53
CHD3-215ENST00000572750 ATP7AQ04656 1500 aa24.59■■□□□ 1.53
CHD3-215ENST00000572750 FER1L4A9Z1Z3 1794 aa24.59■■□□□ 1.53
CHD3-215ENST00000572750 FGD6Q6ZV73 1430 aa24.59■■□□□ 1.53
CHD3-215ENST00000572750 ARHGEF5Q12774 1597 aa24.59■■□□□ 1.53
CHD3-215ENST00000572750 CCDC141Q6ZP82 1450 aa24.58■■□□□ 1.52
CHD3-215ENST00000572750 MLECQ14165 292 aa24.56■■□□□ 1.52
CHD3-215ENST00000572750 PPARGC1BQ86YN6 1023 aaKnown RBP24.56■■□□□ 1.52
CHD3-215ENST00000572750 MYT1LQ9UL68 1186 aa24.55■■□□□ 1.52
CHD3-215ENST00000572750 PREX1Q8TCU6 1659 aa24.55■■□□□ 1.52
CHD3-215ENST00000572750 C9orf84Q5VXU9 1444 aa24.54■■□□□ 1.52
CHD3-215ENST00000572750 ATP10AO60312 1499 aa24.53■■□□□ 1.52
CHD3-215ENST00000572750 SPAG9O60271 1321 aaKnown RBP24.53■■□□□ 1.52
CHD3-215ENST00000572750 CROCC2H7BZ55 1655 aa24.53■■□□□ 1.52
CHD3-215ENST00000572750 TCOF1Q13428 1488 aaKnown RBP24.51■■□□□ 1.51
CHD3-215ENST00000572750 REREQ9P2R6 1566 aa24.51■■□□□ 1.51
CHD3-215ENST00000572750 CEBPAP49715 358 aaPredicted RBP24.5■■□□□ 1.51
CHD3-215ENST00000572750 ADGBQ8N7X0 1667 aa24.5■■□□□ 1.51
CHD3-215ENST00000572750 DNMT1P26358 1616 aaKnown RBP24.47■■□□□ 1.51
CHD3-215ENST00000572750 LTBP4Q8N2S1 1624 aa24.46■■□□□ 1.51
CHD3-215ENST00000572750 MAST1Q9Y2H9 1570 aa24.46■■□□□ 1.51
CHD3-215ENST00000572750 PLXNC1O60486 1568 aa24.45■■□□□ 1.5
CHD3-215ENST00000572750 DMRT2Q9Y5R5 561 aa24.43■■□□□ 1.5
CHD3-215ENST00000572750 RTEL1-TNFRSF6BF6WH68 1400 aa24.43■■□□□ 1.5
CHD3-215ENST00000572750 SHANK2Q9UPX8 1470 aa24.4■■□□□ 1.5
CHD3-215ENST00000572750 ABCC5O15440 1437 aa24.4■■□□□ 1.5
CHD3-215ENST00000572750 DAPK1P53355 1430 aa24.4■■□□□ 1.5
CHD3-215ENST00000572750 AGLP35573 1532 aa24.4■■□□□ 1.5
CHD3-215ENST00000572750 A2MP01023 1474 aa24.39■■□□□ 1.5
CHD3-215ENST00000572750 RSPH4AQ5TD94 716 aa24.39■■□□□ 1.49
CHD3-215ENST00000572750 PTPRTO14522 1441 aa24.38■■□□□ 1.49
CHD3-215ENST00000572750 FAM50AQ14320 339 aaKnown RBP24.36■■□□□ 1.49
CHD3-215ENST00000572750 TSPY4P0CV99 314 aa24.35■■□□□ 1.49
CHD3-215ENST00000572750 TSPY10P0CW01 314 aa24.35■■□□□ 1.49
CHD3-215ENST00000572750 UHRF1BP1Q6BDS2 1440 aa24.34■■□□□ 1.49
CHD3-215ENST00000572750 IQSEC2Q5JU85 1478 aa24.32■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms