RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 UBTFP17480 764 aaKnown RBP11.19□□□□□ -0.62
VPS53-213ENST00000572334 RIMS1Q86UR5 1692 aaKnown RBP11.19□□□□□ -0.62
VPS53-213ENST00000572334 ZFYVE16Q7Z3T8 1539 aa11.17□□□□□ -0.62
VPS53-213ENST00000572334 CDC42BPBQ9Y5S2 1711 aa11.17□□□□□ -0.62
VPS53-213ENST00000572334 POGZQ7Z3K3 1410 aa11.17□□□□□ -0.62
VPS53-213ENST00000572334 MAGI2Q86UL8 1455 aa11.15□□□□□ -0.62
VPS53-213ENST00000572334 TROQ12816 1431 aaPredicted RBP11.15□□□□□ -0.62
VPS53-213ENST00000572334 SCAPERQ9BY12 1400 aa11.15□□□□□ -0.62
VPS53-213ENST00000572334 PCF11O94913 1555 aaKnown RBP11.15□□□□□ -0.62
VPS53-213ENST00000572334 LMTK3Q96Q04 1460 aa11.14□□□□□ -0.63
VPS53-213ENST00000572334 FER1L4A9Z1Z3 1794 aa11.13□□□□□ -0.63
VPS53-213ENST00000572334 ARID4BQ4LE39 1312 aaPredicted RBP11.12□□□□□ -0.63
VPS53-213ENST00000572334 KDM5CP41229 1560 aa11.12□□□□□ -0.63
VPS53-213ENST00000572334 CDC42BPAQ5VT25 1732 aa11.12□□□□□ -0.63
VPS53-213ENST00000572334 CASKIN1Q8WXD9 1431 aa11.11□□□□□ -0.63
VPS53-213ENST00000572334 PREX2Q70Z35 1606 aa11.11□□□□□ -0.63
VPS53-213ENST00000572334 ATP1B4Q9UN42 357 aaPredicted RBP11.11□□□□□ -0.63
VPS53-213ENST00000572334 ARHGEF12Q9NZN5 1544 aa11.1□□□□□ -0.63
VPS53-213ENST00000572334 EFCAB2Q5VUJ9 269 aa11.1□□□□□ -0.63
VPS53-213ENST00000572334 ARHGAP5Q13017 1502 aa11.09□□□□□ -0.63
VPS53-213ENST00000572334 ITSN2Q9NZM3 1697 aa11.09□□□□□ -0.63
VPS53-213ENST00000572334 ATP10AO60312 1499 aa11.09□□□□□ -0.63
VPS53-213ENST00000572334 DIP2CQ9Y2E4 1556 aa11.08□□□□□ -0.64
VPS53-213ENST00000572334 CDK11AQ9UQ88 783 aaPredicted RBP11.08□□□□□ -0.64
VPS53-213ENST00000572334 ABCA6Q8N139 1617 aa11.08□□□□□ -0.64
VPS53-213ENST00000572334 C9orf84Q5VXU9 1444 aa11.08□□□□□ -0.64
VPS53-213ENST00000572334 CCDC18Q5T9S5 1454 aa11.07□□□□□ -0.64
VPS53-213ENST00000572334 ZNF518AQ6AHZ1 1483 aa11.07□□□□□ -0.64
VPS53-213ENST00000572334 AFAP1Q8N556 730 aa11.07□□□□□ -0.64
VPS53-213ENST00000572334 ABCC1P33527 1531 aa11.07□□□□□ -0.64
VPS53-213ENST00000572334 CLIP1P30622 1438 aa11.07□□□□□ -0.64
VPS53-213ENST00000572334 REREQ9P2R6 1566 aa11.07□□□□□ -0.64
VPS53-213ENST00000572334 KIDINS220Q9ULH0 1771 aa11.06□□□□□ -0.64
VPS53-213ENST00000572334 TRAPPC8Q9Y2L5 1435 aa11.06□□□□□ -0.64
VPS53-213ENST00000572334 FYCO1Q9BQS8 1478 aa11.06□□□□□ -0.64
VPS53-213ENST00000572334 MLECQ14165 292 aa11.05□□□□□ -0.64
VPS53-213ENST00000572334 MLH3Q9UHC1 1453 aa11.05□□□□□ -0.64
VPS53-213ENST00000572334 SETD1BQ9UPS6 1966 aaKnown RBP11.05□□□□□ -0.64
VPS53-213ENST00000572334 SAMD9LQ8IVG5 1584 aa11.03□□□□□ -0.64
VPS53-213ENST00000572334 HSPA2P54652 639 aa11.03□□□□□ -0.64
VPS53-213ENST00000572334 PREX1Q8TCU6 1659 aa11.03□□□□□ -0.64
VPS53-213ENST00000572334 C3P01024 1663 aa11.01□□□□□ -0.65
VPS53-213ENST00000572334 STRCQ7RTU9 1775 aa11.01□□□□□ -0.65
VPS53-213ENST00000572334 AGLP35573 1532 aa11.01□□□□□ -0.65
VPS53-213ENST00000572334 GPATCH8Q9UKJ3 1502 aaKnown RBP11.01□□□□□ -0.65
VPS53-213ENST00000572334 PLPPR3Q6T4P5 718 aa11.01□□□□□ -0.65
VPS53-213ENST00000572334 CEBPAP49715 358 aaPredicted RBP11□□□□□ -0.65
VPS53-213ENST00000572334 FBXO41Q8TF61 875 aa10.99□□□□□ -0.65
VPS53-213ENST00000572334 SYCP2Q9BX26 1530 aa10.99□□□□□ -0.65
VPS53-213ENST00000572334 SUPT6HQ7KZ85 1726 aaKnown RBP10.96□□□□□ -0.65
VPS53-213ENST00000572334 INO80Q9ULG1 1556 aaPredicted RBP10.96□□□□□ -0.65
VPS53-213ENST00000572334 PLXNC1O60486 1568 aa10.95□□□□□ -0.66
VPS53-213ENST00000572334 TIAM1Q13009 1591 aa10.95□□□□□ -0.66
VPS53-213ENST00000572334 MROH2AA6NES4 1674 aa10.95□□□□□ -0.66
VPS53-213ENST00000572334 KIAA1107Q9UPP5 1409 aa10.94□□□□□ -0.66
VPS53-213ENST00000572334 HNRNPMP52272 730 aaKnown RBP eCLIP10.94□□□□□ -0.662e-6■■■■□ 19.3
VPS53-213ENST00000572334 ATP7AQ04656 1500 aa10.94□□□□□ -0.66
VPS53-213ENST00000572334 MYT1LQ9UL68 1186 aa10.93□□□□□ -0.66
VPS53-213ENST00000572334 ZNF777Q9ULD5 760 aaPredicted RBP10.92□□□□□ -0.66
VPS53-213ENST00000572334 EHBP1L1Q8N3D4 1523 aa10.92□□□□□ -0.66
VPS53-213ENST00000572334 MBD5Q9P267 1494 aa10.92□□□□□ -0.66
VPS53-213ENST00000572334 CEP162Q5TB80 1403 aa10.92□□□□□ -0.66
VPS53-213ENST00000572334 UHRF1BP1Q6BDS2 1440 aa10.92□□□□□ -0.66
VPS53-213ENST00000572334 CLTCQ00610 1675 aaKnown RBP10.91□□□□□ -0.66
VPS53-213ENST00000572334 ADGBQ8N7X0 1667 aa10.91□□□□□ -0.66
VPS53-213ENST00000572334 MTUS2Q5JR59 1369 aa10.9□□□□□ -0.66
VPS53-213ENST00000572334 CCNB3Q8WWL7 1395 aa10.9□□□□□ -0.66
VPS53-213ENST00000572334 SPAG9O60271 1321 aaKnown RBP10.9□□□□□ -0.66
VPS53-213ENST00000572334 ZNF644Q9H582 1327 aaPredicted RBP10.9□□□□□ -0.66
VPS53-213ENST00000572334 PLEKHH2Q8IVE3 1493 aa10.9□□□□□ -0.66
VPS53-213ENST00000572334 CFDP1Q9UEE9 299 aaPredicted RBP10.9□□□□□ -0.66
VPS53-213ENST00000572334 CNTLNQ9NXG0 1405 aa10.89□□□□□ -0.67
VPS53-213ENST00000572334 A2MP01023 1474 aa10.88□□□□□ -0.67
VPS53-213ENST00000572334 CERKQ8TCT0 537 aa10.88□□□□□ -0.67
VPS53-213ENST00000572334 ZNF142P52746 1687 aaPredicted RBP10.87□□□□□ -0.67
VPS53-213ENST00000572334 ZMYM3Q14202 1370 aa10.87□□□□□ -0.67
VPS53-213ENST00000572334 NPATQ14207 1427 aa10.86□□□□□ -0.67
VPS53-213ENST00000572334 NCOA1Q15788 1441 aa10.86□□□□□ -0.67
VPS53-213ENST00000572334 LTBP4Q8N2S1 1624 aa10.86□□□□□ -0.67
VPS53-213ENST00000572334 NCOA2Q15596 1464 aa10.86□□□□□ -0.67
VPS53-213ENST00000572334 PTPRTO14522 1441 aa10.85□□□□□ -0.67
VPS53-213ENST00000572334 MYO3AQ8NEV4 1616 aa10.85□□□□□ -0.67
VPS53-213ENST00000572334 RTEL1-TNFRSF6BF6WH68 1400 aa10.84□□□□□ -0.67
VPS53-213ENST00000572334 PTPRKQ15262 1439 aa10.84□□□□□ -0.67
VPS53-213ENST00000572334 CAMSAP1Q5T5Y3 1602 aa10.84□□□□□ -0.67
VPS53-213ENST00000572334 CAMSAP2Q08AD1 1489 aa10.84□□□□□ -0.67
VPS53-213ENST00000572334 ESF1Q9H501 851 aaKnown RBP10.83□□□□□ -0.68
VPS53-213ENST00000572334 DMRT2Q9Y5R5 561 aa10.82□□□□□ -0.68
VPS53-213ENST00000572334 ARHGEF5Q12774 1597 aa10.82□□□□□ -0.68
VPS53-213ENST00000572334 CEP170BQ9Y4F5 1589 aaPredicted RBP10.82□□□□□ -0.68
VPS53-213ENST00000572334 CCDC141Q6ZP82 1450 aa10.81□□□□□ -0.68
VPS53-213ENST00000572334 DHX29Q7Z478 1369 aaKnown RBP10.81□□□□□ -0.68
VPS53-213ENST00000572334 LOC105371045A0A1W2PR82 267 aa10.81□□□□□ -0.68
VPS53-213ENST00000572334 LRRC9Q6ZRR7 1453 aa10.81□□□□□ -0.68
VPS53-213ENST00000572334 GGT6Q6P531 493 aa10.8□□□□□ -0.68
VPS53-213ENST00000572334 VPS8Q8N3P4 1428 aa10.8□□□□□ -0.68
VPS53-213ENST00000572334 MSH5O43196 834 aa10.79□□□□□ -0.68
VPS53-213ENST00000572334 DNMT1P26358 1616 aaKnown RBP10.79□□□□□ -0.68
VPS53-213ENST00000572334 PLA2R1Q13018 1463 aa10.79□□□□□ -0.68
VPS53-213ENST00000572334 TCOF1Q13428 1488 aaKnown RBP10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 14.4 ms