RNA–Protein interactions for RNA: ENST00000572259.1

VPS53-212, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 683 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-212ENST00000572259 MYO15BQ96JP2 1530 aa11.31□□□□□ -0.6
VPS53-212ENST00000572259 PDCD7Q8N8D1 485 aaKnown RBP11.31□□□□□ -0.6
VPS53-212ENST00000572259 LARP6Q9BRS8 491 aaKnown RBP11.31□□□□□ -0.6
VPS53-212ENST00000572259 PRKCSHP14314 528 aaPredicted RBP11.3□□□□□ -0.6
VPS53-212ENST00000572259 PELP1Q8IZL8 1130 aaKnown RBP11.28□□□□□ -0.6
VPS53-212ENST00000572259 SLC39A7Q92504 469 aa11.28□□□□□ -0.6
VPS53-212ENST00000572259 OTUD5Q96G74 571 aa11.28□□□□□ -0.6
VPS53-212ENST00000572259 NCKAP5LQ9HCH0 1330 aa11.28□□□□□ -0.6
VPS53-212ENST00000572259 ZCCHC6Q5VYS8 1495 aaKnown RBP11.27□□□□□ -0.6
VPS53-212ENST00000572259 E2F4Q16254 413 aa11.27□□□□□ -0.61
VPS53-212ENST00000572259 MICALL2Q8IY33 904 aa11.27□□□□□ -0.61
VPS53-212ENST00000572259 BOLA1Q9Y3E2 137 aa11.27□□□□□ -0.61
VPS53-212ENST00000572259 DDX27Q96GQ7 796 aaKnown RBP11.26□□□□□ -0.61
VPS53-212ENST00000572259 L3MBTL3Q96JM7 780 aaPredicted RBP11.26□□□□□ -0.61
VPS53-212ENST00000572259 CRISPLD2Q9H0B8 497 aa11.26□□□□□ -0.61
VPS53-212ENST00000572259 C7P10643 843 aa11.25□□□□□ -0.61
VPS53-212ENST00000572259 DCAF1Q9Y4B6 1507 aa11.25□□□□□ -0.61
VPS53-212ENST00000572259 KCNV2Q8TDN2 545 aa11.24□□□□□ -0.61
VPS53-212ENST00000572259 MFSD10Q14728 455 aa11.22□□□□□ -0.61
VPS53-212ENST00000572259 TMC2Q8TDI7 906 aa11.22□□□□□ -0.61
VPS53-212ENST00000572259 GPHNQ9NQX3 736 aaPredicted RBP11.21□□□□□ -0.61
VPS53-212ENST00000572259 METRNQ9UJH8 293 aa11.21□□□□□ -0.61
VPS53-212ENST00000572259 COLQQ9Y215 455 aaPredicted RBP11.21□□□□□ -0.61
VPS53-212ENST00000572259 ARHGEF1Q92888 912 aaKnown RBP11.19□□□□□ -0.62
VPS53-212ENST00000572259 TMEM121BQ9BXQ6 578 aaPredicted RBP11.19□□□□□ -0.62
VPS53-212ENST00000572259 PPP1R15BQ5SWA1 713 aa11.17□□□□□ -0.62
VPS53-212ENST00000572259 ARXQ96QS3 562 aa11.17□□□□□ -0.62
VPS53-212ENST00000572259 POTEB2H3BUK9 544 aa11.16□□□□□ -0.62
VPS53-212ENST00000572259 PCDH10Q9P2E7 1040 aa11.15□□□□□ -0.62
VPS53-212ENST00000572259 TPRNQ4KMQ1 711 aa11.13□□□□□ -0.63
VPS53-212ENST00000572259 POTEFA5A3E0 1075 aa11.12□□□□□ -0.63
VPS53-212ENST00000572259 DSG2Q14126 1118 aa11.12□□□□□ -0.63
VPS53-212ENST00000572259 UNC13AQ9UPW8 1703 aa11.12□□□□□ -0.63
VPS53-212ENST00000572259 C2orf72A6NCS6 295 aa11.11□□□□□ -0.63
VPS53-212ENST00000572259 CAMK2BQ13554 666 aa11.11□□□□□ -0.63
VPS53-212ENST00000572259 C3orf67Q6ZVT6 689 aa11.11□□□□□ -0.63
VPS53-212ENST00000572259 TULP1O00294 542 aaPredicted RBP11.1□□□□□ -0.63
VPS53-212ENST00000572259 FOXK1P85037 733 aa11.1□□□□□ -0.63
VPS53-212ENST00000572259 PLPP6Q8IY26 295 aa11.08□□□□□ -0.64
VPS53-212ENST00000572259 KIF3CO14782 793 aa11.07□□□□□ -0.64
VPS53-212ENST00000572259 LCE2DQ5TA82 110 aaPredicted RBP11.06□□□□□ -0.64
VPS53-212ENST00000572259 ARIH1Q9Y4X5 557 aaPredicted RBP11.06□□□□□ -0.64
VPS53-212ENST00000572259 SEMA3EO15041 775 aa11.04□□□□□ -0.64
VPS53-212ENST00000572259 TMEM92Q6UXU6 159 aa11.03□□□□□ -0.64
VPS53-212ENST00000572259 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.02□□□□□ -0.65
VPS53-212ENST00000572259 SMYD5Q6GMV2 418 aa11.01□□□□□ -0.65
VPS53-212ENST00000572259 EMILIN3Q9NT22 766 aa11.01□□□□□ -0.65
VPS53-212ENST00000572259 SCRIBQ14160 1630 aa11□□□□□ -0.65
VPS53-212ENST00000572259 DPYSL4O14531 572 aa11□□□□□ -0.65
VPS53-212ENST00000572259 BICRAQ9NZM4 1560 aa10.99□□□□□ -0.65
VPS53-212ENST00000572259 TESPA1A2RU30 521 aaPredicted RBP10.99□□□□□ -0.65
VPS53-212ENST00000572259 MAP3K9P80192 1104 aa10.99□□□□□ -0.65
VPS53-212ENST00000572259 TIMELESSQ9UNS1 1208 aa10.99□□□□□ -0.65
VPS53-212ENST00000572259 LMOD2Q6P5Q4 547 aa10.98□□□□□ -0.65
VPS53-212ENST00000572259 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.98□□□□□ -0.65
VPS53-212ENST00000572259 SPDYE16A6NNV3 312 aaPredicted RBP10.97□□□□□ -0.65
VPS53-212ENST00000572259 UPF1Q92900 1129 aaKnown RBP eCLIP10.96□□□□□ -0.65
VPS53-212ENST00000572259 SHROOM4Q9ULL8 1493 aa10.95□□□□□ -0.66
VPS53-212ENST00000572259 TBC1D12O60347 775 aa10.93□□□□□ -0.66
VPS53-212ENST00000572259 PDIA6Q15084 440 aa10.92□□□□□ -0.66
VPS53-212ENST00000572259 ERICH6Q7L0X2 663 aa10.91□□□□□ -0.66
VPS53-212ENST00000572259 OXER1Q8TDS5 423 aa10.9□□□□□ -0.66
VPS53-212ENST00000572259 MLLT3P42568 568 aaPredicted RBP10.89□□□□□ -0.67
VPS53-212ENST00000572259 MAMSTRQ6ZN01 415 aa10.88□□□□□ -0.67
VPS53-212ENST00000572259 SCUBE2Q9NQ36 999 aa10.88□□□□□ -0.67
VPS53-212ENST00000572259 ZNF316A6NFI3 1004 aaPredicted RBP10.87□□□□□ -0.67
VPS53-212ENST00000572259 PTCD2Q8WV60 388 aaKnown RBP10.86□□□□□ -0.67
VPS53-212ENST00000572259 SLC34A2O95436 690 aa10.85□□□□□ -0.67
VPS53-212ENST00000572259 GRXCR2A6NFK2 248 aa10.84□□□□□ -0.67
VPS53-212ENST00000572259 EVI5O60447 810 aa10.84□□□□□ -0.67
VPS53-212ENST00000572259 POTEJP0CG39 1038 aa10.84□□□□□ -0.67
VPS53-212ENST00000572259 HOMEZQ8IX15 550 aa10.84□□□□□ -0.67
VPS53-212ENST00000572259 SLAIN1Q8ND83 568 aa10.84□□□□□ -0.67
VPS53-212ENST00000572259 RBM26Q5T8P6 1007 aaKnown RBP10.82□□□□□ -0.68
VPS53-212ENST00000572259 ZC3H15Q8WU90 426 aaKnown RBP10.82□□□□□ -0.68
VPS53-212ENST00000572259 GPIHBP1Q8IV16 184 aa10.79□□□□□ -0.68
VPS53-212ENST00000572259 DDX12PQ92771 950 aa10.79□□□□□ -0.68
VPS53-212ENST00000572259 PCDHGA4Q9Y5G9 962 aa10.79□□□□□ -0.68
VPS53-212ENST00000572259 PTGER2P43116 358 aa10.78□□□□□ -0.68
VPS53-212ENST00000572259 DOK7Q18PE1 504 aa10.78□□□□□ -0.68
VPS53-212ENST00000572259 RIMBP2O15034 1052 aa10.77□□□□□ -0.69
VPS53-212ENST00000572259 GTF3C3Q9Y5Q9 886 aa10.75□□□□□ -0.69
VPS53-212ENST00000572259 EIF4G1Q04637 1599 aaKnown RBP10.74□□□□□ -0.69
VPS53-212ENST00000572259 ZNF710Q8N1W2 664 aa10.74□□□□□ -0.69
VPS53-212ENST00000572259 ANO8Q9HCE9 1232 aaPredicted RBP10.74□□□□□ -0.69
VPS53-212ENST00000572259 NUTM2FA1L443 756 aa10.73□□□□□ -0.69
VPS53-212ENST00000572259 OSBPP22059 807 aa10.72□□□□□ -0.69
VPS53-212ENST00000572259 ZMYND10O75800 440 aa10.71□□□□□ -0.69
VPS53-212ENST00000572259 KRI1Q8N9T8 703 aaKnown RBP10.71□□□□□ -0.69
VPS53-212ENST00000572259 CC2D2AQ9P2K1 1620 aa10.71□□□□□ -0.69
VPS53-212ENST00000572259 SNPHO15079 494 aa10.7□□□□□ -0.7
VPS53-212ENST00000572259 HOXB3P14651 431 aaPredicted RBP10.7□□□□□ -0.7
VPS53-212ENST00000572259 ARSIQ5FYB1 569 aa10.7□□□□□ -0.7
VPS53-212ENST00000572259 ZSWIM6Q9HCJ5 1215 aa10.7□□□□□ -0.7
VPS53-212ENST00000572259 PHF14O94880 888 aa10.69□□□□□ -0.7
VPS53-212ENST00000572259 FAM163AQ96GL9 167 aaPredicted RBP10.69□□□□□ -0.7
VPS53-212ENST00000572259 EPAS1Q99814 870 aa10.69□□□□□ -0.7
VPS53-212ENST00000572259 SLC24A3Q9HC58 644 aa10.68□□□□□ -0.7
VPS53-212ENST00000572259 NUDT7P0C024 238 aa10.67□□□□□ -0.7
VPS53-212ENST00000572259 BARGINQ6ZT62 677 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 11.3 ms