RNA–Protein interactions for RNA: ENST00000570937.1

NUP88-202, Transcript of nucleoporin 88, humanhuman

TSL 3

Gene NUP88, Length 361 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-202ENST00000570937 PAXIP1Q6ZW49 1069 aaPredicted RBP10.82□□□□□ -0.68
NUP88-202ENST00000570937 CFAP44Q96MT7 982 aa10.79□□□□□ -0.68
NUP88-202ENST00000570937 SLAIN1Q8ND83 568 aa10.78□□□□□ -0.68
NUP88-202ENST00000570937 TMEM92Q6UXU6 159 aa10.77□□□□□ -0.69
NUP88-202ENST00000570937 KIF3CO14782 793 aa10.74□□□□□ -0.69
NUP88-202ENST00000570937 PLCB2Q00722 1185 aa10.74□□□□□ -0.69
NUP88-202ENST00000570937 FAM163AQ96GL9 167 aaPredicted RBP10.71□□□□□ -0.69
NUP88-202ENST00000570937 CRISPLD2Q9H0B8 497 aa10.69□□□□□ -0.7
NUP88-202ENST00000570937 C2orf72A6NCS6 295 aa10.68□□□□□ -0.7
NUP88-202ENST00000570937 CADPS2Q86UW7 1296 aa10.68□□□□□ -0.7
NUP88-202ENST00000570937 TMC2Q8TDI7 906 aa10.68□□□□□ -0.7
NUP88-202ENST00000570937 GPHNQ9NQX3 736 aaPredicted RBP10.68□□□□□ -0.7
NUP88-202ENST00000570937 NCKAP5LQ9HCH0 1330 aa10.67□□□□□ -0.7
NUP88-202ENST00000570937 PDE4AP27815 886 aa10.65□□□□□ -0.7
NUP88-202ENST00000570937 SNPHO15079 494 aa10.64□□□□□ -0.71
NUP88-202ENST00000570937 FOXK1P85037 733 aa10.64□□□□□ -0.71
NUP88-202ENST00000570937 TSHZ2Q9NRE2 1034 aa10.62□□□□□ -0.71
NUP88-202ENST00000570937 MFSD10Q14728 455 aa10.61□□□□□ -0.71
NUP88-202ENST00000570937 HOXB3P14651 431 aaPredicted RBP10.6□□□□□ -0.71
NUP88-202ENST00000570937 DSG2Q14126 1118 aa10.6□□□□□ -0.71
NUP88-202ENST00000570937 LARP6Q9BRS8 491 aaKnown RBP10.58□□□□□ -0.72
NUP88-202ENST00000570937 DOK7Q18PE1 504 aa10.57□□□□□ -0.72
NUP88-202ENST00000570937 PPP1R15BQ5SWA1 713 aa10.57□□□□□ -0.72
NUP88-202ENST00000570937 PLPP6Q8IY26 295 aa10.57□□□□□ -0.72
NUP88-202ENST00000570937 DDX27Q96GQ7 796 aaKnown RBP10.57□□□□□ -0.72
NUP88-202ENST00000570937 ST18O60284 1047 aa10.56□□□□□ -0.72
NUP88-202ENST00000570937 CDAN1Q8IWY9 1227 aa10.56□□□□□ -0.72
NUP88-202ENST00000570937 SLC34A2O95436 690 aa10.55□□□□□ -0.72
NUP88-202ENST00000570937 ZSWIM6Q9HCJ5 1215 aa10.53□□□□□ -0.72
NUP88-202ENST00000570937 RIMBP2O15034 1052 aa10.52□□□□□ -0.73
NUP88-202ENST00000570937 HAP1P54257 671 aaPredicted RBP10.52□□□□□ -0.73
NUP88-202ENST00000570937 ZNF710Q8N1W2 664 aa10.5□□□□□ -0.73
NUP88-202ENST00000570937 CAMK2BQ13554 666 aa10.49□□□□□ -0.73
NUP88-202ENST00000570937 PTCD2Q8WV60 388 aaKnown RBP10.49□□□□□ -0.73
NUP88-202ENST00000570937 HOXB1P14653 301 aaPredicted RBP10.47□□□□□ -0.73
NUP88-202ENST00000570937 GPR153Q6NV75 609 aa10.47□□□□□ -0.73
NUP88-202ENST00000570937 WDR70Q9NW82 654 aa10.47□□□□□ -0.73
NUP88-202ENST00000570937 OXER1Q8TDS5 423 aa10.46□□□□□ -0.73
NUP88-202ENST00000570937 PCDHGA4Q9Y5G9 962 aa10.44□□□□□ -0.74
NUP88-202ENST00000570937 MARVELD3Q96A59 401 aa10.43□□□□□ -0.74
NUP88-202ENST00000570937 EMILIN3Q9NT22 766 aa10.43□□□□□ -0.74
NUP88-202ENST00000570937 TBC1D12O60347 775 aa10.42□□□□□ -0.74
NUP88-202ENST00000570937 E2F4Q16254 413 aa10.42□□□□□ -0.74
NUP88-202ENST00000570937 ARSIQ5FYB1 569 aa10.42□□□□□ -0.74
NUP88-202ENST00000570937 VSIG10Q8N0Z9 540 aa10.42□□□□□ -0.74
NUP88-202ENST00000570937 KDM4FA0A1W2PPD8 638 aa10.4□□□□□ -0.74
NUP88-202ENST00000570937 KDM2AQ9Y2K7 1162 aa10.4□□□□□ -0.74
NUP88-202ENST00000570937 UPF1Q92900 1129 aaKnown RBP eCLIP10.39□□□□□ -0.75
NUP88-202ENST00000570937 ARIH1Q9Y4X5 557 aaPredicted RBP10.39□□□□□ -0.75
NUP88-202ENST00000570937 KHSRPQ92945 711 aaKnown RBP eCLIP10.38□□□□□ -0.75
NUP88-202ENST00000570937 EMP3P54852 163 aa10.37□□□□□ -0.75
NUP88-202ENST00000570937 NUDT7P0C024 238 aa10.36□□□□□ -0.75
NUP88-202ENST00000570937 MMRN1Q13201 1228 aa10.36□□□□□ -0.75
NUP88-202ENST00000570937 MAP3K9P80192 1104 aa10.35□□□□□ -0.75
NUP88-202ENST00000570937 SPNS2Q8IVW8 549 aa10.33□□□□□ -0.76
NUP88-202ENST00000570937 ANO8Q9HCE9 1232 aaPredicted RBP10.33□□□□□ -0.76
NUP88-202ENST00000570937 FAM205CA6NFA0 338 aa10.32□□□□□ -0.76
NUP88-202ENST00000570937 DPYSL4O14531 572 aa10.32□□□□□ -0.76
NUP88-202ENST00000570937 EVI5O60447 810 aa10.32□□□□□ -0.76
NUP88-202ENST00000570937 P3H3Q8IVL6 736 aa10.32□□□□□ -0.76
NUP88-202ENST00000570937 ZNF316A6NFI3 1004 aaPredicted RBP10.31□□□□□ -0.76
NUP88-202ENST00000570937 KCNV2Q8TDN2 545 aa10.31□□□□□ -0.76
NUP88-202ENST00000570937 ARHGEF1Q92888 912 aaKnown RBP10.31□□□□□ -0.76
NUP88-202ENST00000570937 LHX6Q9UPM6 363 aa10.3□□□□□ -0.76
NUP88-202ENST00000570937 ERBB3P21860 1342 aa10.3□□□□□ -0.76
NUP88-202ENST00000570937 PDIA6Q15084 440 aa10.29□□□□□ -0.76
NUP88-202ENST00000570937 HS3ST6Q96QI5 342 aa10.29□□□□□ -0.76
NUP88-202ENST00000570937 POTEB3A0JP26 581 aa10.28□□□□□ -0.76
NUP88-202ENST00000570937 SPDYE16A6NNV3 312 aaPredicted RBP10.28□□□□□ -0.76
NUP88-202ENST00000570937 POTEBQ6S5H4 581 aa10.28□□□□□ -0.76
NUP88-202ENST00000570937 PSDA5PKW4 1024 aaPredicted RBP10.27□□□□□ -0.77
NUP88-202ENST00000570937 PTGER2P43116 358 aa10.25□□□□□ -0.77
NUP88-202ENST00000570937 VARS2Q5ST30 1063 aaKnown RBP10.25□□□□□ -0.77
NUP88-202ENST00000570937 SLC24A1O60721 1099 aa10.24□□□□□ -0.77
NUP88-202ENST00000570937 ZNF687Q8N1G0 1237 aa10.22□□□□□ -0.77
NUP88-202ENST00000570937 FOSBP53539 338 aa10.21□□□□□ -0.77
NUP88-202ENST00000570937 JPH4Q96JJ6 628 aa10.21□□□□□ -0.77
NUP88-202ENST00000570937 PHF14O94880 888 aa10.19□□□□□ -0.78
NUP88-202ENST00000570937 PPP4R3BQ5MIZ7 849 aa10.19□□□□□ -0.78
NUP88-202ENST00000570937 ZNF454Q8N9F8 522 aa10.18□□□□□ -0.78
NUP88-202ENST00000570937 PCDHGA10Q9Y5H3 936 aa10.17□□□□□ -0.78
NUP88-202ENST00000570937 EPAS1Q99814 870 aa10.16□□□□□ -0.78
NUP88-202ENST00000570937 PBX2P40425 430 aa10.15□□□□□ -0.78
NUP88-202ENST00000570937 ZDHHC16Q969W1 377 aa10.15□□□□□ -0.78
NUP88-202ENST00000570937 KRTAP3-3Q9BYR6 98 aa10.15□□□□□ -0.78
NUP88-202ENST00000570937 KRTAP3-2Q9BYR7 98 aa10.15□□□□□ -0.78
NUP88-202ENST00000570937 DDX12PQ92771 950 aa10.14□□□□□ -0.79
NUP88-202ENST00000570937 FBXW7Q969H0 707 aa10.14□□□□□ -0.79
NUP88-202ENST00000570937 TYW1BQ6NUM6 668 aa10.13□□□□□ -0.79
NUP88-202ENST00000570937 POTEEQ6S8J3 1075 aa10.13□□□□□ -0.79
NUP88-202ENST00000570937 BCL2L12Q9HB09 334 aa10.13□□□□□ -0.79
NUP88-202ENST00000570937 ADAM33Q9BZ11 813 aa10.11□□□□□ -0.79
NUP88-202ENST00000570937 GRXCR2A6NFK2 248 aa10.1□□□□□ -0.79
NUP88-202ENST00000570937 ARHGAP33O14559 1287 aa10.1□□□□□ -0.79
NUP88-202ENST00000570937 SEMA3EO15041 775 aa10.1□□□□□ -0.79
NUP88-202ENST00000570937 TESPA1A2RU30 521 aaPredicted RBP10.09□□□□□ -0.79
NUP88-202ENST00000570937 OSBPP22059 807 aa10.09□□□□□ -0.79
NUP88-202ENST00000570937 MLLT3P42568 568 aaPredicted RBP10.09□□□□□ -0.79
NUP88-202ENST00000570937 EN1Q05925 392 aaPredicted RBP10.09□□□□□ -0.79
NUP88-202ENST00000570937 NBR1Q14596 966 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms