RNA–Protein interactions for RNA: ENST00000569388.5

NAE1-221, Transcript of NEDD8 activating enzyme E1 subunit 1, human

TSL 5

Gene NAE1, Length 562 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NAE1-221	ENST00000569388	ADGRL1	O94910	1474 aa		33.56	■■■□□ 2.96
NAE1-221	ENST00000569388	RAPGEF3	O95398	923 aa		33.55	■■■□□ 2.96
NAE1-221	ENST00000569388	DENND4B	O75064	1496 aa	Predicted RBP	33.52	■■■□□ 2.96
NAE1-221	ENST00000569388	EFCAB2	Q5VUJ9	269 aa		33.52	■■■□□ 2.96
NAE1-221	ENST00000569388	SUPT6H	Q7KZ85	1726 aa	Known RBP	33.51	■■■□□ 2.96
NAE1-221	ENST00000569388	GPATCH8	Q9UKJ3	1502 aa	Known RBP	33.49	■■■□□ 2.95
NAE1-221	ENST00000569388	LRRC9	Q6ZRR7	1453 aa		33.49	■■■□□ 2.95
NAE1-221	ENST00000569388	MAP3K1	Q13233	1512 aa		33.48	■■■□□ 2.95
NAE1-221	ENST00000569388	SCAPER	Q9BY12	1400 aa		33.47	■■■□□ 2.95
NAE1-221	ENST00000569388	CCNB3	Q8WWL7	1395 aa		33.46	■■■□□ 2.95
NAE1-221	ENST00000569388	ITSN2	Q9NZM3	1697 aa		33.45	■■■□□ 2.94
NAE1-221	ENST00000569388	POGZ	Q7Z3K3	1410 aa		33.44	■■■□□ 2.94
NAE1-221	ENST00000569388	NCOA2	Q15596	1464 aa		33.44	■■■□□ 2.94
NAE1-221	ENST00000569388	ABCC1	P33527	1531 aa		33.43	■■■□□ 2.94
NAE1-221	ENST00000569388	SAMD9L	Q8IVG5	1584 aa		33.43	■■■□□ 2.94
NAE1-221	ENST00000569388	KANK4	Q5T7N3	995 aa	Predicted RBP	33.41	■■■□□ 2.94
NAE1-221	ENST00000569388	ZMYM4	Q5VZL5	1548 aa		33.39	■■■□□ 2.94
NAE1-221	ENST00000569388	ZNF777	Q9ULD5	760 aa	Predicted RBP	33.37	■■■□□ 2.93
NAE1-221	ENST00000569388	ARHGEF40	Q8TER5	1519 aa		33.36	■■■□□ 2.93
NAE1-221	ENST00000569388	ARHGEF12	Q9NZN5	1544 aa		33.36	■■■□□ 2.93
NAE1-221	ENST00000569388	APLP2	Q06481	763 aa		33.35	■■■□□ 2.93
NAE1-221	ENST00000569388	CFDP1	Q9UEE9	299 aa	Predicted RBP	33.33	■■■□□ 2.93
NAE1-221	ENST00000569388	SYCP2	Q9BX26	1530 aa		33.33	■■■□□ 2.93
NAE1-221	ENST00000569388	ZNF518A	Q6AHZ1	1483 aa		33.31	■■■□□ 2.92
NAE1-221	ENST00000569388	ZFYVE16	Q7Z3T8	1539 aa		33.31	■■■□□ 2.92
NAE1-221	ENST00000569388	KDM5C	P41229	1560 aa		33.3	■■■□□ 2.92
NAE1-221	ENST00000569388	TRAPPC8	Q9Y2L5	1435 aa		33.28	■■■□□ 2.92
NAE1-221	ENST00000569388	YEATS2	Q9ULM3	1422 aa		33.28	■■■□□ 2.92
NAE1-221	ENST00000569388	AFAP1	Q8N556	730 aa		33.26	■■■□□ 2.91
NAE1-221	ENST00000569388	HECW2	Q9P2P5	1572 aa		33.26	■■■□□ 2.91
NAE1-221	ENST00000569388	MAGI2	Q86UL8	1455 aa		33.23	■■■□□ 2.91
NAE1-221	ENST00000569388	ZNF644	Q9H582	1327 aa	Predicted RBP	33.23	■■■□□ 2.91
NAE1-221	ENST00000569388	PLEKHH2	Q8IVE3	1493 aa		33.21	■■■□□ 2.91
NAE1-221	ENST00000569388	SIGLEC1	Q9BZZ2	1709 aa		33.2	■■■□□ 2.91
NAE1-221	ENST00000569388	KDM4F	A0A1W2PPD8	638 aa		33.19	■■■□□ 2.9
NAE1-221	ENST00000569388	HNRNPM	P52272	730 aa	Known RBP eCLIP	33.19	■■■□□ 2.9
NAE1-221	ENST00000569388	CAMSAP2	Q08AD1	1489 aa		33.18	■■■□□ 2.9
NAE1-221	ENST00000569388	KIAA1107	Q9UPP5	1409 aa		33.17	■■■□□ 2.9
NAE1-221	ENST00000569388	ABCA6	Q8N139	1617 aa		33.17	■■■□□ 2.9
NAE1-221	ENST00000569388	KIDINS220	Q9ULH0	1771 aa		33.14	■■■□□ 2.9
NAE1-221	ENST00000569388	DIP2C	Q9Y2E4	1556 aa		33.14	■■■□□ 2.9
NAE1-221	ENST00000569388	MYOM3	Q5VTT5	1437 aa		33.14	■■■□□ 2.9
NAE1-221	ENST00000569388	MYT1L	Q9UL68	1186 aa		33.14	■■■□□ 2.9
NAE1-221	ENST00000569388	MLH3	Q9UHC1	1453 aa		33.12	■■■□□ 2.89
NAE1-221	ENST00000569388	MBD5	Q9P267	1494 aa		33.1	■■■□□ 2.89
NAE1-221	ENST00000569388	INO80	Q9ULG1	1556 aa	Predicted RBP	33.09	■■■□□ 2.89
NAE1-221	ENST00000569388	BCORL1	Q5H9F3	1711 aa		33.08	■■■□□ 2.89
NAE1-221	ENST00000569388	ATP10A	O60312	1499 aa		33.08	■■■□□ 2.89
NAE1-221	ENST00000569388	ARID4B	Q4LE39	1312 aa	Predicted RBP	33.07	■■■□□ 2.88
NAE1-221	ENST00000569388	AEBP2	Q6ZN18	517 aa	Predicted RBP	33.07	■■■□□ 2.88
NAE1-221	ENST00000569388	C9orf84	Q5VXU9	1444 aa		33.07	■■■□□ 2.88
NAE1-221	ENST00000569388	ATP7A	Q04656	1500 aa		33.06	■■■□□ 2.88
NAE1-221	ENST00000569388	SPAG9	O60271	1321 aa	Known RBP	33.03	■■■□□ 2.88
NAE1-221	ENST00000569388	MIA2	Q96PC5	1412 aa		33.03	■■■□□ 2.88
NAE1-221	ENST00000569388	ADAMTSL3	P82987	1691 aa		33.01	■■■□□ 2.88
NAE1-221	ENST00000569388	CCDC141	Q6ZP82	1450 aa		33.01	■■■□□ 2.88
NAE1-221	ENST00000569388	PTPN23	Q9H3S7	1636 aa		33.01	■■■□□ 2.87
NAE1-221	ENST00000569388	ARHGEF5	Q12774	1597 aa		33	■■■□□ 2.87
NAE1-221	ENST00000569388	RERE	Q9P2R6	1566 aa		32.98	■■■□□ 2.87
NAE1-221	ENST00000569388	MADD	Q8WXG6	1647 aa		32.98	■■■□□ 2.87
NAE1-221	ENST00000569388	FGD6	Q6ZV73	1430 aa		32.96	■■■□□ 2.87
NAE1-221	ENST00000569388	PPARGC1B	Q86YN6	1023 aa	Known RBP	32.96	■■■□□ 2.87
NAE1-221	ENST00000569388	ADGB	Q8N7X0	1667 aa		32.91	■■■□□ 2.86
NAE1-221	ENST00000569388	MLEC	Q14165	292 aa		32.91	■■■□□ 2.86
NAE1-221	ENST00000569388	RIMS1	Q86UR5	1692 aa	Known RBP	32.9	■■■□□ 2.86
NAE1-221	ENST00000569388	FER1L4	A9Z1Z3	1794 aa		32.88	■■■□□ 2.85
NAE1-221	ENST00000569388	CROCC2	H7BZ55	1655 aa		32.88	■■■□□ 2.85
NAE1-221	ENST00000569388	TCOF1	Q13428	1488 aa	Known RBP	32.87	■■■□□ 2.85
NAE1-221	ENST00000569388	PLXNC1	O60486	1568 aa		32.86	■■■□□ 2.85
NAE1-221	ENST00000569388	RTEL1-TNFRSF6B	F6WH68	1400 aa		32.85	■■■□□ 2.85
NAE1-221	ENST00000569388	AGL	P35573	1532 aa		32.84	■■■□□ 2.85
NAE1-221	ENST00000569388	RSPH4A	Q5TD94	716 aa		32.84	■■■□□ 2.85
NAE1-221	ENST00000569388	A2M	P01023	1474 aa		32.84	■■■□□ 2.85
NAE1-221	ENST00000569388	MAST1	Q9Y2H9	1570 aa		32.83	■■■□□ 2.85
NAE1-221	ENST00000569388	DNMT1	P26358	1616 aa	Known RBP	32.82	■■■□□ 2.84
NAE1-221	ENST00000569388	PTPRM	P28827	1452 aa		32.8	■■■□□ 2.84
NAE1-221	ENST00000569388	TSPY4	P0CV99	314 aa		32.78	■■■□□ 2.84
NAE1-221	ENST00000569388	TSPY10	P0CW01	314 aa		32.78	■■■□□ 2.84
NAE1-221	ENST00000569388	ABCC5	O15440	1437 aa		32.77	■■■□□ 2.84
NAE1-221	ENST00000569388	DAPK1	P53355	1430 aa		32.76	■■■□□ 2.83
NAE1-221	ENST00000569388	FAM50A	Q14320	339 aa	Known RBP	32.74	■■■□□ 2.83
NAE1-221	ENST00000569388	SHANK2	Q9UPX8	1470 aa		32.73	■■■□□ 2.83
NAE1-221	ENST00000569388	DHX29	Q7Z478	1369 aa	Known RBP	32.68	■■■□□ 2.82
NAE1-221	ENST00000569388	PLPPR3	Q6T4P5	718 aa		32.67	■■■□□ 2.82
NAE1-221	ENST00000569388	CLTC	Q00610	1675 aa	Known RBP	32.61	■■■□□ 2.81
NAE1-221	ENST00000569388	CHIC2	Q9UKJ5	165 aa		32.6	■■■□□ 2.81
NAE1-221	ENST00000569388	C3	P01024	1663 aa		32.59	■■■□□ 2.81
NAE1-221	ENST00000569388	GGT6	Q6P531	493 aa		32.58	■■■□□ 2.81
NAE1-221	ENST00000569388	KIF15	Q9NS87	1388 aa		32.58	■■■□□ 2.81
NAE1-221	ENST00000569388	DUOX2	Q9NRD8	1548 aa		32.57	■■■□□ 2.8
NAE1-221	ENST00000569388	EIF2AK4	Q9P2K8	1649 aa	Known RBP	32.56	■■■□□ 2.8
NAE1-221	ENST00000569388	KIF3B	O15066	747 aa		32.56	■■■□□ 2.8
NAE1-221	ENST00000569388	ESF1	Q9H501	851 aa	Known RBP	32.55	■■■□□ 2.8
NAE1-221	ENST00000569388	RRP7BP	Q9NSQ0	103 aa		32.55	■■■□□ 2.8
NAE1-221	ENST00000569388	MROH2A	A6NES4	1674 aa		32.54	■■■□□ 2.8
NAE1-221	ENST00000569388	CEBPA	P49715	358 aa	Predicted RBP	32.53	■■■□□ 2.8
NAE1-221	ENST00000569388	PTPRK	Q15262	1439 aa		32.52	■■■□□ 2.8
NAE1-221	ENST00000569388	RNF17	Q9BXT8	1623 aa	Known RBP	32.52	■■■□□ 2.8
NAE1-221	ENST00000569388	CNTLN	Q9NXG0	1405 aa		32.51	■■■□□ 2.8
NAE1-221	ENST00000569388	ADGRL2	O95490	1459 aa		32.51	■■■□□ 2.79

Retrieved 100 of 20,778 RNA–protein pairs in 67 ms