RNA–Protein interactions for RNA: ENST00000569336.2

CLN6-209, Transcript of CLN6, transmembrane ER protein, humanhuman

Gene CLN6, Length 557 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-209ENST00000569336 TIAM1Q13009 1591 aa15.69■□□□□ 0.1
CLN6-209ENST00000569336 LOC105371045A0A1W2PR82 267 aa15.68■□□□□ 0.1
CLN6-209ENST00000569336 PLCH2O75038 1416 aa15.67■□□□□ 0.1
CLN6-209ENST00000569336 ZMYM4Q5VZL5 1548 aa15.66■□□□□ 0.1
CLN6-209ENST00000569336 ARHGEF40Q8TER5 1519 aa15.65■□□□□ 0.1
CLN6-209ENST00000569336 AKNAQ7Z591 1439 aa15.65■□□□□ 0.1
CLN6-209ENST00000569336 ADGRL1O94910 1474 aa15.65■□□□□ 0.1
CLN6-209ENST00000569336 FBXO41Q8TF61 875 aa15.64■□□□□ 0.09
CLN6-209ENST00000569336 MTUS2Q5JR59 1369 aa15.63■□□□□ 0.09
CLN6-209ENST00000569336 DENND4BO75064 1496 aaPredicted RBP15.63■□□□□ 0.09
CLN6-209ENST00000569336 ABCC1P33527 1531 aa15.62■□□□□ 0.09
CLN6-209ENST00000569336 MAP3K1Q13233 1512 aa15.62■□□□□ 0.09
CLN6-209ENST00000569336 HECW2Q9P2P5 1572 aa15.62■□□□□ 0.09
CLN6-209ENST00000569336 KDM5CP41229 1560 aa15.59■□□□□ 0.09
CLN6-209ENST00000569336 POGZQ7Z3K3 1410 aa15.59■□□□□ 0.09
CLN6-209ENST00000569336 ZFYVE16Q7Z3T8 1539 aa15.58■□□□□ 0.09
CLN6-209ENST00000569336 SAMD9LQ8IVG5 1584 aa15.58■□□□□ 0.09
CLN6-209ENST00000569336 ZNF518AQ6AHZ1 1483 aa15.58■□□□□ 0.08
CLN6-209ENST00000569336 EFCAB2Q5VUJ9 269 aa15.57■□□□□ 0.08
CLN6-209ENST00000569336 MAGI2Q86UL8 1455 aa15.57■□□□□ 0.08
CLN6-209ENST00000569336 BCORL1Q5H9F3 1711 aa15.55■□□□□ 0.08
CLN6-209ENST00000569336 SCAPERQ9BY12 1400 aa15.55■□□□□ 0.08
CLN6-209ENST00000569336 GPATCH8Q9UKJ3 1502 aaKnown RBP15.54■□□□□ 0.08
CLN6-209ENST00000569336 SYCP2Q9BX26 1530 aa15.53■□□□□ 0.08
CLN6-209ENST00000569336 LRRC9Q6ZRR7 1453 aa15.53■□□□□ 0.08
CLN6-209ENST00000569336 PLEKHH2Q8IVE3 1493 aa15.53■□□□□ 0.08
CLN6-209ENST00000569336 CCNB3Q8WWL7 1395 aa15.53■□□□□ 0.08
CLN6-209ENST00000569336 NCOA2Q15596 1464 aa15.52■□□□□ 0.08
CLN6-209ENST00000569336 KIDINS220Q9ULH0 1771 aa15.52■□□□□ 0.08
CLN6-209ENST00000569336 RAPGEF3O95398 923 aa15.52■□□□□ 0.08
CLN6-209ENST00000569336 FER1L4A9Z1Z3 1794 aa15.52■□□□□ 0.07
CLN6-209ENST00000569336 ABCA6Q8N139 1617 aa15.51■□□□□ 0.07
CLN6-209ENST00000569336 SIGLEC1Q9BZZ2 1709 aa15.5■□□□□ 0.07
CLN6-209ENST00000569336 ADAMTSL3P82987 1691 aa15.5■□□□□ 0.07
CLN6-209ENST00000569336 ADGBQ8N7X0 1667 aa15.5■□□□□ 0.07
CLN6-209ENST00000569336 INO80Q9ULG1 1556 aaPredicted RBP15.49■□□□□ 0.07
CLN6-209ENST00000569336 REREQ9P2R6 1566 aa15.49■□□□□ 0.07
CLN6-209ENST00000569336 DIP2CQ9Y2E4 1556 aa15.49■□□□□ 0.07
CLN6-209ENST00000569336 LMTK3Q96Q04 1460 aa15.46■□□□□ 0.07
CLN6-209ENST00000569336 APLP2Q06481 763 aa15.46■□□□□ 0.07
CLN6-209ENST00000569336 ARHGEF12Q9NZN5 1544 aa15.46■□□□□ 0.07
CLN6-209ENST00000569336 MADDQ8WXG6 1647 aa15.46■□□□□ 0.06
CLN6-209ENST00000569336 MLH3Q9UHC1 1453 aa15.46■□□□□ 0.06
CLN6-209ENST00000569336 CROCC2H7BZ55 1655 aa15.45■□□□□ 0.06
CLN6-209ENST00000569336 RIMS1Q86UR5 1692 aaKnown RBP15.45■□□□□ 0.06
CLN6-209ENST00000569336 KIAA1107Q9UPP5 1409 aa15.45■□□□□ 0.06
CLN6-209ENST00000569336 CAMSAP2Q08AD1 1489 aa15.45■□□□□ 0.06
CLN6-209ENST00000569336 C9orf84Q5VXU9 1444 aa15.44■□□□□ 0.06
CLN6-209ENST00000569336 YEATS2Q9ULM3 1422 aa15.44■□□□□ 0.06
CLN6-209ENST00000569336 ATP7AQ04656 1500 aa15.44■□□□□ 0.06
CLN6-209ENST00000569336 CFDP1Q9UEE9 299 aaPredicted RBP15.44■□□□□ 0.06
CLN6-209ENST00000569336 ARHGEF5Q12774 1597 aa15.44■□□□□ 0.06
CLN6-209ENST00000569336 TRAPPC8Q9Y2L5 1435 aa15.43■□□□□ 0.06
CLN6-209ENST00000569336 ATP10AO60312 1499 aa15.42■□□□□ 0.06
CLN6-209ENST00000569336 ZNF777Q9ULD5 760 aaPredicted RBP15.41■□□□□ 0.06
CLN6-209ENST00000569336 MYOM3Q5VTT5 1437 aa15.4■□□□□ 0.06
CLN6-209ENST00000569336 PTPN23Q9H3S7 1636 aa15.39■□□□□ 0.05
CLN6-209ENST00000569336 CCDC141Q6ZP82 1450 aa15.39■□□□□ 0.05
CLN6-209ENST00000569336 MIA2Q96PC5 1412 aa15.38■□□□□ 0.05
CLN6-209ENST00000569336 PLXNC1O60486 1568 aa15.37■□□□□ 0.05
CLN6-209ENST00000569336 AFAP1Q8N556 730 aa15.37■□□□□ 0.05
CLN6-209ENST00000569336 MYT1LQ9UL68 1186 aa15.37■□□□□ 0.05
CLN6-209ENST00000569336 ARID4BQ4LE39 1312 aaPredicted RBP15.37■□□□□ 0.05
CLN6-209ENST00000569336 AGLP35573 1532 aa15.37■□□□□ 0.05
CLN6-209ENST00000569336 MAST1Q9Y2H9 1570 aa15.36■□□□□ 0.05
CLN6-209ENST00000569336 MROH2AA6NES4 1674 aa15.35■□□□□ 0.05
CLN6-209ENST00000569336 MBD5Q9P267 1494 aa15.35■□□□□ 0.05
CLN6-209ENST00000569336 KANK4Q5T7N3 995 aaPredicted RBP15.34■□□□□ 0.05
CLN6-209ENST00000569336 DNMT1P26358 1616 aaKnown RBP15.34■□□□□ 0.05
CLN6-209ENST00000569336 SPAG9O60271 1321 aaKnown RBP15.34■□□□□ 0.05
CLN6-209ENST00000569336 SOCS7O14512 581 aa15.33■□□□□ 0.04
CLN6-209ENST00000569336 SETD1BQ9UPS6 1966 aaKnown RBP15.33■□□□□ 0.04
CLN6-209ENST00000569336 HNRNPMP52272 730 aaKnown RBP eCLIP15.32■□□□□ 0.04
CLN6-209ENST00000569336 RTEL1-TNFRSF6BF6WH68 1400 aa15.32■□□□□ 0.04
CLN6-209ENST00000569336 PTPRMP28827 1452 aa15.32■□□□□ 0.04
CLN6-209ENST00000569336 C3P01024 1663 aa15.32■□□□□ 0.04
CLN6-209ENST00000569336 EIF2AK4Q9P2K8 1649 aaKnown RBP15.31■□□□□ 0.04
CLN6-209ENST00000569336 RSPH4AQ5TD94 716 aa15.3■□□□□ 0.04
CLN6-209ENST00000569336 FGD6Q6ZV73 1430 aa15.3■□□□□ 0.04
CLN6-209ENST00000569336 PREX1Q8TCU6 1659 aa15.3■□□□□ 0.04
CLN6-209ENST00000569336 ZNF644Q9H582 1327 aaPredicted RBP15.3■□□□□ 0.04
CLN6-209ENST00000569336 CLTCQ00610 1675 aaKnown RBP15.29■□□□□ 0.04
CLN6-209ENST00000569336 A2MP01023 1474 aa15.29■□□□□ 0.04
CLN6-209ENST00000569336 DISP3Q9P2K9 1392 aa15.29■□□□□ 0.04
CLN6-209ENST00000569336 ILDR2Q71H61 639 aa15.29■□□□□ 0.04
CLN6-209ENST00000569336 TCOF1Q13428 1488 aaKnown RBP15.28■□□□□ 0.04
CLN6-209ENST00000569336 SHANK2Q9UPX8 1470 aa15.28■□□□□ 0.04
CLN6-209ENST00000569336 ZC3H13Q5T200 1668 aaKnown RBP15.26■□□□□ 0.03
CLN6-209ENST00000569336 RNF17Q9BXT8 1623 aaKnown RBP15.25■□□□□ 0.03
CLN6-209ENST00000569336 FAM135AQ9P2D6 1515 aa15.25■□□□□ 0.03
CLN6-209ENST00000569336 CNTLNQ9NXG0 1405 aa15.23■□□□□ 0.03
CLN6-209ENST00000569336 TSPY4P0CV99 314 aa15.21■□□□□ 0.03
CLN6-209ENST00000569336 TSPY10P0CW01 314 aa15.21■□□□□ 0.03
CLN6-209ENST00000569336 MLECQ14165 292 aa15.21■□□□□ 0.03
CLN6-209ENST00000569336 DUOX2Q9NRD8 1548 aa15.21■□□□□ 0.03
CLN6-209ENST00000569336 CEP152O94986 1710 aa15.2■□□□□ 0.02
CLN6-209ENST00000569336 DAPK1P53355 1430 aa15.2■□□□□ 0.02
CLN6-209ENST00000569336 DEPDC5O75140 1603 aa15.19■□□□□ 0.02
CLN6-209ENST00000569336 KDM5DQ9BY66 1539 aa15.18■□□□□ 0.02
CLN6-209ENST00000569336 CFAP65Q6ZU64 1925 aaKnown RBP15.18■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms