RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, human

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLK3-225	ENST00000569063	ZMYM4	Q5VZL5	1548 aa		32.54	■■■□□ 2.8
CLK3-225	ENST00000569063	POGZ	Q7Z3K3	1410 aa		32.52	■■■□□ 2.8
CLK3-225	ENST00000569063	ARHGEF40	Q8TER5	1519 aa		32.5	■■■□□ 2.79
CLK3-225	ENST00000569063	MAGI2	Q86UL8	1455 aa		32.49	■■■□□ 2.79
CLK3-225	ENST00000569063	CDC42BPB	Q9Y5S2	1711 aa		32.49	■■■□□ 2.79
CLK3-225	ENST00000569063	PREX2	Q70Z35	1606 aa		32.47	■■■□□ 2.79
CLK3-225	ENST00000569063	ZFYVE16	Q7Z3T8	1539 aa		32.43	■■■□□ 2.78
CLK3-225	ENST00000569063	MTUS2	Q5JR59	1369 aa		32.42	■■■□□ 2.78
CLK3-225	ENST00000569063	YEATS2	Q9ULM3	1422 aa		32.42	■■■□□ 2.78
CLK3-225	ENST00000569063	CDC42BPA	Q5VT25	1732 aa		32.41	■■■□□ 2.78
CLK3-225	ENST00000569063	ZNF518A	Q6AHZ1	1483 aa		32.41	■■■□□ 2.78
CLK3-225	ENST00000569063	ARID4B	Q4LE39	1312 aa	Predicted RBP	32.38	■■■□□ 2.77
CLK3-225	ENST00000569063	GPATCH8	Q9UKJ3	1502 aa	Known RBP	32.37	■■■□□ 2.77
CLK3-225	ENST00000569063	AFAP1	Q8N556	730 aa		32.36	■■■□□ 2.77
CLK3-225	ENST00000569063	ADAMTSL3	P82987	1691 aa		32.36	■■■□□ 2.77
CLK3-225	ENST00000569063	KDM5C	P41229	1560 aa		32.35	■■■□□ 2.77
CLK3-225	ENST00000569063	ABCC1	P33527	1531 aa		32.35	■■■□□ 2.77
CLK3-225	ENST00000569063	BCORL1	Q5H9F3	1711 aa		32.34	■■■□□ 2.77
CLK3-225	ENST00000569063	VPS8	Q8N3P4	1428 aa		32.34	■■■□□ 2.77
CLK3-225	ENST00000569063	EHBP1L1	Q8N3D4	1523 aa		32.32	■■■□□ 2.76
CLK3-225	ENST00000569063	ARHGEF12	Q9NZN5	1544 aa		32.32	■■■□□ 2.76
CLK3-225	ENST00000569063	CCNB3	Q8WWL7	1395 aa		32.31	■■■□□ 2.76
CLK3-225	ENST00000569063	ATP10A	O60312	1499 aa		32.29	■■■□□ 2.76
CLK3-225	ENST00000569063	TRAPPC8	Q9Y2L5	1435 aa		32.28	■■■□□ 2.76
CLK3-225	ENST00000569063	ITSN2	Q9NZM3	1697 aa		32.27	■■■□□ 2.76
CLK3-225	ENST00000569063	CFDP1	Q9UEE9	299 aa	Predicted RBP	32.26	■■■□□ 2.75
CLK3-225	ENST00000569063	ZNF777	Q9ULD5	760 aa	Predicted RBP	32.26	■■■□□ 2.75
CLK3-225	ENST00000569063	MLH3	Q9UHC1	1453 aa		32.26	■■■□□ 2.75
CLK3-225	ENST00000569063	SAMD9L	Q8IVG5	1584 aa		32.26	■■■□□ 2.75
CLK3-225	ENST00000569063	SIGLEC1	Q9BZZ2	1709 aa		32.26	■■■□□ 2.75
CLK3-225	ENST00000569063	C9orf84	Q5VXU9	1444 aa		32.25	■■■□□ 2.75
CLK3-225	ENST00000569063	HECW2	Q9P2P5	1572 aa		32.24	■■■□□ 2.75
CLK3-225	ENST00000569063	PTPRM	P28827	1452 aa		32.23	■■■□□ 2.75
CLK3-225	ENST00000569063	TIAM1	Q13009	1591 aa		32.23	■■■□□ 2.75
CLK3-225	ENST00000569063	MADD	Q8WXG6	1647 aa		32.21	■■■□□ 2.75
CLK3-225	ENST00000569063	KIAA1107	Q9UPP5	1409 aa		32.2	■■■□□ 2.75
CLK3-225	ENST00000569063	MYT1L	Q9UL68	1186 aa		32.2	■■■□□ 2.75
CLK3-225	ENST00000569063	PLEKHH2	Q8IVE3	1493 aa		32.19	■■■□□ 2.74
CLK3-225	ENST00000569063	SYCP2	Q9BX26	1530 aa		32.18	■■■□□ 2.74
CLK3-225	ENST00000569063	DIP2C	Q9Y2E4	1556 aa		32.17	■■■□□ 2.74
CLK3-225	ENST00000569063	HNRNPM	P52272	730 aa	Known RBP eCLIP	32.16	■■■□□ 2.74	4e-10	■■■■■ 38
CLK3-225	ENST00000569063	MAP3K1	Q13233	1512 aa		32.15	■■■□□ 2.74
CLK3-225	ENST00000569063	NCOA2	Q15596	1464 aa		32.14	■■■□□ 2.74
CLK3-225	ENST00000569063	RERE	Q9P2R6	1566 aa		32.14	■■■□□ 2.74
CLK3-225	ENST00000569063	SUPT6H	Q7KZ85	1726 aa	Known RBP	32.14	■■■□□ 2.74
CLK3-225	ENST00000569063	ABCA6	Q8N139	1617 aa		32.13	■■■□□ 2.73
CLK3-225	ENST00000569063	LRRC9	Q6ZRR7	1453 aa		32.12	■■■□□ 2.73
CLK3-225	ENST00000569063	MLEC	Q14165	292 aa		32.11	■■■□□ 2.73
CLK3-225	ENST00000569063	KIDINS220	Q9ULH0	1771 aa		32.11	■■■□□ 2.73
CLK3-225	ENST00000569063	RIMS1	Q86UR5	1692 aa	Known RBP	32.09	■■■□□ 2.73
CLK3-225	ENST00000569063	SPAG9	O60271	1321 aa	Known RBP	32.08	■■■□□ 2.73
CLK3-225	ENST00000569063	ZNF644	Q9H582	1327 aa	Predicted RBP	32.08	■■■□□ 2.73
CLK3-225	ENST00000569063	KANK4	Q5T7N3	995 aa	Predicted RBP	32.04	■■■□□ 2.72
CLK3-225	ENST00000569063	AGL	P35573	1532 aa		32.04	■■■□□ 2.72
CLK3-225	ENST00000569063	MBD5	Q9P267	1494 aa		32.03	■■■□□ 2.72
CLK3-225	ENST00000569063	FER1L4	A9Z1Z3	1794 aa		32.02	■■■□□ 2.72
CLK3-225	ENST00000569063	ATP7A	Q04656	1500 aa		32	■■■□□ 2.71
CLK3-225	ENST00000569063	INO80	Q9ULG1	1556 aa	Predicted RBP	31.98	■■■□□ 2.71
CLK3-225	ENST00000569063	CAMSAP2	Q08AD1	1489 aa		31.95	■■■□□ 2.7
CLK3-225	ENST00000569063	APLP2	Q06481	763 aa		31.93	■■■□□ 2.7
CLK3-225	ENST00000569063	RSPH4A	Q5TD94	716 aa		31.93	■■■□□ 2.7
CLK3-225	ENST00000569063	RTEL1-TNFRSF6B	F6WH68	1400 aa		31.91	■■■□□ 2.7
CLK3-225	ENST00000569063	PLPPR3	Q6T4P5	718 aa		31.88	■■■□□ 2.69
CLK3-225	ENST00000569063	A2M	P01023	1474 aa		31.88	■■■□□ 2.69
CLK3-225	ENST00000569063	CCDC141	Q6ZP82	1450 aa		31.88	■■■□□ 2.69
CLK3-225	ENST00000569063	PLXNC1	O60486	1568 aa		31.86	■■■□□ 2.69
CLK3-225	ENST00000569063	LMTK3	Q96Q04	1460 aa		31.85	■■■□□ 2.69
CLK3-225	ENST00000569063	MYOM3	Q5VTT5	1437 aa		31.85	■■■□□ 2.69
CLK3-225	ENST00000569063	MIA2	Q96PC5	1412 aa		31.84	■■■□□ 2.69
CLK3-225	ENST00000569063	ARHGEF5	Q12774	1597 aa		31.83	■■■□□ 2.69
CLK3-225	ENST00000569063	ADGB	Q8N7X0	1667 aa		31.83	■■■□□ 2.69
CLK3-225	ENST00000569063	CEBPA	P49715	358 aa	Predicted RBP	31.82	■■■□□ 2.68
CLK3-225	ENST00000569063	ESF1	Q9H501	851 aa	Known RBP	31.81	■■■□□ 2.68
CLK3-225	ENST00000569063	CNTLN	Q9NXG0	1405 aa		31.78	■■■□□ 2.68
CLK3-225	ENST00000569063	TSPY4	P0CV99	314 aa		31.76	■■■□□ 2.67
CLK3-225	ENST00000569063	TSPY10	P0CW01	314 aa		31.76	■■■□□ 2.67
CLK3-225	ENST00000569063	DHX29	Q7Z478	1369 aa	Known RBP	31.76	■■■□□ 2.67
CLK3-225	ENST00000569063	C3	P01024	1663 aa		31.72	■■■□□ 2.67
CLK3-225	ENST00000569063	PPP6R1	Q9UPN7	881 aa		31.7	■■■□□ 2.67
CLK3-225	ENST00000569063	GGT6	Q6P531	493 aa		31.69	■■■□□ 2.66
CLK3-225	ENST00000569063	MROH2A	A6NES4	1674 aa		31.67	■■■□□ 2.66
CLK3-225	ENST00000569063	PREX1	Q8TCU6	1659 aa		31.67	■■■□□ 2.66
CLK3-225	ENST00000569063	MAST1	Q9Y2H9	1570 aa		31.67	■■■□□ 2.66
CLK3-225	ENST00000569063	HSPA2	P54652	639 aa		31.66	■■■□□ 2.66
CLK3-225	ENST00000569063	ZMYM3	Q14202	1370 aa		31.65	■■■□□ 2.66
CLK3-225	ENST00000569063	SETD1B	Q9UPS6	1966 aa	Known RBP	31.64	■■■□□ 2.66
CLK3-225	ENST00000569063	PTPN23	Q9H3S7	1636 aa		31.63	■■■□□ 2.65
CLK3-225	ENST00000569063	FGD6	Q6ZV73	1430 aa		31.62	■■■□□ 2.65
CLK3-225	ENST00000569063	UHRF1BP1	Q6BDS2	1440 aa		31.61	■■■□□ 2.65
CLK3-225	ENST00000569063	KIF3B	O15066	747 aa		31.61	■■■□□ 2.65
CLK3-225	ENST00000569063	CLTC	Q00610	1675 aa	Known RBP	31.6	■■■□□ 2.65
CLK3-225	ENST00000569063	TCOF1	Q13428	1488 aa	Known RBP	31.59	■■■□□ 2.65
CLK3-225	ENST00000569063	NPAT	Q14207	1427 aa		31.58	■■■□□ 2.65
CLK3-225	ENST00000569063	ABCC5	O15440	1437 aa		31.56	■■■□□ 2.64
CLK3-225	ENST00000569063	SHANK2	Q9UPX8	1470 aa		31.53	■■■□□ 2.64
CLK3-225	ENST00000569063	FAM135A	Q9P2D6	1515 aa		31.51	■■■□□ 2.63
CLK3-225	ENST00000569063	DAPK1	P53355	1430 aa		31.5	■■■□□ 2.63
CLK3-225	ENST00000569063	CROCC2	H7BZ55	1655 aa		31.5	■■■□□ 2.63
CLK3-225	ENST00000569063	PTPRK	Q15262	1439 aa		31.49	■■■□□ 2.63
CLK3-225	ENST00000569063	DNMT1	P26358	1616 aa	Known RBP	31.49	■■■□□ 2.63

Retrieved 100 of 20,778 RNA–protein pairs in 36.3 ms