RNA–Protein interactions for RNA: ENST00000568558.6

CLN3-236, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 634 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-236ENST00000568558 MAGI2Q86UL8 1455 aa24.63■■□□□ 1.53
CLN3-236ENST00000568558 POGZQ7Z3K3 1410 aa24.61■■□□□ 1.53
CLN3-236ENST00000568558 YEATS2Q9ULM3 1422 aa24.61■■□□□ 1.53
CLN3-236ENST00000568558 SCAPERQ9BY12 1400 aa24.61■■□□□ 1.53
CLN3-236ENST00000568558 CDK11AQ9UQ88 783 aaPredicted RBP24.59■■□□□ 1.53
CLN3-236ENST00000568558 TROQ12816 1431 aaPredicted RBP24.59■■□□□ 1.53
CLN3-236ENST00000568558 PCF11O94913 1555 aaKnown RBP24.56■■□□□ 1.52
CLN3-236ENST00000568558 FER1L4A9Z1Z3 1794 aa24.55■■□□□ 1.52
CLN3-236ENST00000568558 CLIP1P30622 1438 aa24.54■■□□□ 1.52
CLN3-236ENST00000568558 CDC42BPBQ9Y5S2 1711 aa24.54■■□□□ 1.52
CLN3-236ENST00000568558 EFCAB2Q5VUJ9 269 aa24.53■■□□□ 1.52
CLN3-236ENST00000568558 ARHGAP5Q13017 1502 aa24.52■■□□□ 1.52
CLN3-236ENST00000568558 LMTK3Q96Q04 1460 aa24.51■■□□□ 1.51
CLN3-236ENST00000568558 CASKIN1Q8WXD9 1431 aa24.5■■□□□ 1.51
CLN3-236ENST00000568558 CCDC18Q5T9S5 1454 aa24.5■■□□□ 1.51
CLN3-236ENST00000568558 PREX2Q70Z35 1606 aa24.5■■□□□ 1.51
CLN3-236ENST00000568558 KDM5CP41229 1560 aa24.49■■□□□ 1.51
CLN3-236ENST00000568558 ZNF518AQ6AHZ1 1483 aa24.48■■□□□ 1.51
CLN3-236ENST00000568558 ATP10AO60312 1499 aa24.47■■□□□ 1.51
CLN3-236ENST00000568558 C9orf84Q5VXU9 1444 aa24.47■■□□□ 1.51
CLN3-236ENST00000568558 CDC42BPAQ5VT25 1732 aa24.44■■□□□ 1.5
CLN3-236ENST00000568558 ARHGEF12Q9NZN5 1544 aa24.44■■□□□ 1.5
CLN3-236ENST00000568558 FYCO1Q9BQS8 1478 aa24.43■■□□□ 1.5
CLN3-236ENST00000568558 ITSN2Q9NZM3 1697 aa24.43■■□□□ 1.5
CLN3-236ENST00000568558 MLECQ14165 292 aa24.41■■□□□ 1.5
CLN3-236ENST00000568558 DIP2CQ9Y2E4 1556 aa24.41■■□□□ 1.5
CLN3-236ENST00000568558 ABCC1P33527 1531 aa24.4■■□□□ 1.5
CLN3-236ENST00000568558 ABCA6Q8N139 1617 aa24.39■■□□□ 1.49
CLN3-236ENST00000568558 REREQ9P2R6 1566 aa24.38■■□□□ 1.49
CLN3-236ENST00000568558 PLPPR3Q6T4P5 718 aa24.37■■□□□ 1.49
CLN3-236ENST00000568558 AFAP1Q8N556 730 aa24.37■■□□□ 1.49
CLN3-236ENST00000568558 MLH3Q9UHC1 1453 aa24.35■■□□□ 1.49
CLN3-236ENST00000568558 PREX1Q8TCU6 1659 aa24.34■■□□□ 1.49
CLN3-236ENST00000568558 TRAPPC8Q9Y2L5 1435 aa24.32■■□□□ 1.48
CLN3-236ENST00000568558 KIDINS220Q9ULH0 1771 aa24.31■■□□□ 1.48
CLN3-236ENST00000568558 HSPA2P54652 639 aa24.31■■□□□ 1.48
CLN3-236ENST00000568558 MYT1LQ9UL68 1186 aa24.29■■□□□ 1.48
CLN3-236ENST00000568558 SAMD9LQ8IVG5 1584 aa24.29■■□□□ 1.48
CLN3-236ENST00000568558 AGLP35573 1532 aa24.27■■□□□ 1.48
CLN3-236ENST00000568558 FBXO41Q8TF61 875 aa24.26■■□□□ 1.47
CLN3-236ENST00000568558 C3P01024 1663 aa24.24■■□□□ 1.47
CLN3-236ENST00000568558 SETD1BQ9UPS6 1966 aaKnown RBP24.24■■□□□ 1.47
CLN3-236ENST00000568558 GPATCH8Q9UKJ3 1502 aaKnown RBP24.24■■□□□ 1.47
CLN3-236ENST00000568558 SYCP2Q9BX26 1530 aa24.23■■□□□ 1.47
CLN3-236ENST00000568558 CEBPAP49715 358 aaPredicted RBP24.22■■□□□ 1.47
CLN3-236ENST00000568558 ZNF777Q9ULD5 760 aaPredicted RBP24.17■■□□□ 1.46
CLN3-236ENST00000568558 STRCQ7RTU9 1775 aa24.16■■□□□ 1.46
CLN3-236ENST00000568558 UHRF1BP1Q6BDS2 1440 aa24.15■■□□□ 1.46
CLN3-236ENST00000568558 INO80Q9ULG1 1556 aaPredicted RBP24.15■■□□□ 1.46
CLN3-236ENST00000568558 SUPT6HQ7KZ85 1726 aaKnown RBP24.15■■□□□ 1.46
CLN3-236ENST00000568558 ATP7AQ04656 1500 aa24.14■■□□□ 1.45
CLN3-236ENST00000568558 MTUS2Q5JR59 1369 aa24.14■■□□□ 1.45
CLN3-236ENST00000568558 PLEKHH2Q8IVE3 1493 aa24.13■■□□□ 1.45
CLN3-236ENST00000568558 KIAA1107Q9UPP5 1409 aa24.13■■□□□ 1.45
CLN3-236ENST00000568558 MROH2AA6NES4 1674 aa24.13■■□□□ 1.45
CLN3-236ENST00000568558 TIAM1Q13009 1591 aa24.12■■□□□ 1.45
CLN3-236ENST00000568558 EHBP1L1Q8N3D4 1523 aa24.12■■□□□ 1.45
CLN3-236ENST00000568558 CCNB3Q8WWL7 1395 aa24.12■■□□□ 1.45
CLN3-236ENST00000568558 SPAG9O60271 1321 aaKnown RBP24.1■■□□□ 1.45
CLN3-236ENST00000568558 HNRNPMP52272 730 aaKnown RBP eCLIP24.1■■□□□ 1.45
CLN3-236ENST00000568558 PLXNC1O60486 1568 aa24.1■■□□□ 1.45
CLN3-236ENST00000568558 CNTLNQ9NXG0 1405 aa24.1■■□□□ 1.45
CLN3-236ENST00000568558 ESF1Q9H501 851 aaKnown RBP24.09■■□□□ 1.45
CLN3-236ENST00000568558 CFDP1Q9UEE9 299 aaPredicted RBP24.09■■□□□ 1.45
CLN3-236ENST00000568558 CEP162Q5TB80 1403 aa24.09■■□□□ 1.45
CLN3-236ENST00000568558 ADGBQ8N7X0 1667 aa24.06■■□□□ 1.44
CLN3-236ENST00000568558 CLTCQ00610 1675 aaKnown RBP24.05■■□□□ 1.44
CLN3-236ENST00000568558 A2MP01023 1474 aa24.03■■□□□ 1.44
CLN3-236ENST00000568558 CERKQ8TCT0 537 aa24.02■■□□□ 1.44
CLN3-236ENST00000568558 MBD5Q9P267 1494 aa24■■□□□ 1.43
CLN3-236ENST00000568558 DMRT2Q9Y5R5 561 aa23.99■■□□□ 1.43
CLN3-236ENST00000568558 NPATQ14207 1427 aa23.98■■□□□ 1.43
CLN3-236ENST00000568558 ZNF644Q9H582 1327 aaPredicted RBP23.97■■□□□ 1.43
CLN3-236ENST00000568558 PTPRTO14522 1441 aa23.95■■□□□ 1.42
CLN3-236ENST00000568558 ZMYM3Q14202 1370 aa23.95■■□□□ 1.42
CLN3-236ENST00000568558 ZNF142P52746 1687 aaPredicted RBP23.95■■□□□ 1.42
CLN3-236ENST00000568558 MYO3AQ8NEV4 1616 aa23.94■■□□□ 1.42
CLN3-236ENST00000568558 NCOA2Q15596 1464 aa23.94■■□□□ 1.42
CLN3-236ENST00000568558 RTEL1-TNFRSF6BF6WH68 1400 aa23.93■■□□□ 1.42
CLN3-236ENST00000568558 NCOA1Q15788 1441 aa23.93■■□□□ 1.42
CLN3-236ENST00000568558 CAMSAP1Q5T5Y3 1602 aa23.92■■□□□ 1.42
CLN3-236ENST00000568558 CAMSAP2Q08AD1 1489 aa23.91■■□□□ 1.42
CLN3-236ENST00000568558 CCDC141Q6ZP82 1450 aa23.88■■□□□ 1.41
CLN3-236ENST00000568558 GGT6Q6P531 493 aa23.88■■□□□ 1.41
CLN3-236ENST00000568558 PTPRKQ15262 1439 aa23.87■■□□□ 1.41
CLN3-236ENST00000568558 CEP170BQ9Y4F5 1589 aaPredicted RBP23.86■■□□□ 1.41
CLN3-236ENST00000568558 PPP6R1Q9UPN7 881 aa23.85■■□□□ 1.41
CLN3-236ENST00000568558 DHX29Q7Z478 1369 aaKnown RBP23.85■■□□□ 1.41
CLN3-236ENST00000568558 ARHGEF5Q12774 1597 aa23.85■■□□□ 1.41
CLN3-236ENST00000568558 VPS8Q8N3P4 1428 aa23.84■■□□□ 1.41
CLN3-236ENST00000568558 LTBP4Q8N2S1 1624 aa23.84■■□□□ 1.41
CLN3-236ENST00000568558 LRRC9Q6ZRR7 1453 aa23.81■■□□□ 1.4
CLN3-236ENST00000568558 PLA2R1Q13018 1463 aa23.8■■□□□ 1.4
CLN3-236ENST00000568558 FAM135AQ9P2D6 1515 aa23.79■■□□□ 1.4
CLN3-236ENST00000568558 RSPH4AQ5TD94 716 aa23.79■■□□□ 1.4
CLN3-236ENST00000568558 KDM5DQ9BY66 1539 aa23.78■■□□□ 1.4
CLN3-236ENST00000568558 LOC105371045A0A1W2PR82 267 aa23.77■■□□□ 1.4
CLN3-236ENST00000568558 IQSEC2Q5JU85 1478 aa23.76■■□□□ 1.39
CLN3-236ENST00000568558 MAP3K1Q13233 1512 aa23.76■■□□□ 1.39
CLN3-236ENST00000568558 DNMT1P26358 1616 aaKnown RBP23.76■■□□□ 1.39
Retrieved 100 of 20,778 RNA–protein pairs in 88.9 ms