RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-231ENST00000568422 SCAPERQ9BY12 1400 aa27.6■■■□□ 2.01
CLN3-231ENST00000568422 EFCAB2Q5VUJ9 269 aa27.6■■■□□ 2.01
CLN3-231ENST00000568422 CLIP1P30622 1438 aa27.59■■■□□ 2.01
CLN3-231ENST00000568422 POGZQ7Z3K3 1410 aa27.59■■■□□ 2.01
CLN3-231ENST00000568422 YEATS2Q9ULM3 1422 aa27.55■■■□□ 2
CLN3-231ENST00000568422 CCDC18Q5T9S5 1454 aa27.54■■■□□ 2
CLN3-231ENST00000568422 RIMS1Q86UR5 1692 aaKnown RBP27.53■■■□□ 2
CLN3-231ENST00000568422 CASKIN1Q8WXD9 1431 aa27.53■■■□□ 2
CLN3-231ENST00000568422 ILDR1Q86SU0 546 aaPredicted RBP27.51■■□□□ 1.99
CLN3-231ENST00000568422 SIGLEC1Q9BZZ2 1709 aa27.5■■□□□ 1.99
CLN3-231ENST00000568422 ARHGAP5Q13017 1502 aa27.5■■□□□ 1.99
CLN3-231ENST00000568422 PCF11O94913 1555 aaKnown RBP27.49■■□□□ 1.99
CLN3-231ENST00000568422 ZNF518AQ6AHZ1 1483 aa27.48■■□□□ 1.99
CLN3-231ENST00000568422 ATP10AO60312 1499 aa27.47■■□□□ 1.99
CLN3-231ENST00000568422 CDC42BPBQ9Y5S2 1711 aa27.46■■□□□ 1.99
CLN3-231ENST00000568422 FYCO1Q9BQS8 1478 aa27.44■■□□□ 1.98
CLN3-231ENST00000568422 C9orf84Q5VXU9 1444 aa27.43■■□□□ 1.98
CLN3-231ENST00000568422 FER1L4A9Z1Z3 1794 aa27.43■■□□□ 1.98
CLN3-231ENST00000568422 KDM5CP41229 1560 aa27.43■■□□□ 1.98
CLN3-231ENST00000568422 PREX2Q70Z35 1606 aa27.42■■□□□ 1.98
CLN3-231ENST00000568422 LMTK3Q96Q04 1460 aa27.41■■□□□ 1.98
CLN3-231ENST00000568422 AFAP1Q8N556 730 aa27.37■■□□□ 1.97
CLN3-231ENST00000568422 ARHGEF12Q9NZN5 1544 aa27.36■■□□□ 1.97
CLN3-231ENST00000568422 MLECQ14165 292 aa27.36■■□□□ 1.97
CLN3-231ENST00000568422 CDC42BPAQ5VT25 1732 aa27.35■■□□□ 1.97
CLN3-231ENST00000568422 ABCC1P33527 1531 aa27.33■■□□□ 1.97
CLN3-231ENST00000568422 MLH3Q9UHC1 1453 aa27.32■■□□□ 1.96
CLN3-231ENST00000568422 REREQ9P2R6 1566 aa27.32■■□□□ 1.96
CLN3-231ENST00000568422 ITSN2Q9NZM3 1697 aa27.32■■□□□ 1.96
CLN3-231ENST00000568422 MYT1LQ9UL68 1186 aa27.31■■□□□ 1.96
CLN3-231ENST00000568422 DIP2CQ9Y2E4 1556 aa27.31■■□□□ 1.96
CLN3-231ENST00000568422 PLPPR3Q6T4P5 718 aa27.28■■□□□ 1.96
CLN3-231ENST00000568422 ABCA6Q8N139 1617 aa27.26■■□□□ 1.95
CLN3-231ENST00000568422 TRAPPC8Q9Y2L5 1435 aa27.25■■□□□ 1.95
CLN3-231ENST00000568422 PREX1Q8TCU6 1659 aa27.22■■□□□ 1.95
CLN3-231ENST00000568422 AGLP35573 1532 aa27.21■■□□□ 1.95
CLN3-231ENST00000568422 KIDINS220Q9ULH0 1771 aa27.21■■□□□ 1.95
CLN3-231ENST00000568422 GPATCH8Q9UKJ3 1502 aaKnown RBP27.21■■□□□ 1.95
CLN3-231ENST00000568422 SAMD9LQ8IVG5 1584 aa27.19■■□□□ 1.94
CLN3-231ENST00000568422 HSPA2P54652 639 aa27.19■■□□□ 1.94
CLN3-231ENST00000568422 FBXO41Q8TF61 875 aa27.18■■□□□ 1.94
CLN3-231ENST00000568422 SETD1BQ9UPS6 1966 aaKnown RBP27.17■■□□□ 1.94
CLN3-231ENST00000568422 ZNF777Q9ULD5 760 aaPredicted RBP27.16■■□□□ 1.94
CLN3-231ENST00000568422 PLEKHH2Q8IVE3 1493 aa27.15■■□□□ 1.94
CLN3-231ENST00000568422 MTUS2Q5JR59 1369 aa27.14■■□□□ 1.94
CLN3-231ENST00000568422 SYCP2Q9BX26 1530 aa27.14■■□□□ 1.94
CLN3-231ENST00000568422 KIAA1107Q9UPP5 1409 aa27.14■■□□□ 1.93
CLN3-231ENST00000568422 CEBPAP49715 358 aaPredicted RBP27.13■■□□□ 1.93
CLN3-231ENST00000568422 CCNB3Q8WWL7 1395 aa27.12■■□□□ 1.93
CLN3-231ENST00000568422 CFDP1Q9UEE9 299 aaPredicted RBP27.12■■□□□ 1.93
CLN3-231ENST00000568422 ESF1Q9H501 851 aaKnown RBP27.11■■□□□ 1.93
CLN3-231ENST00000568422 C3P01024 1663 aa27.11■■□□□ 1.93
CLN3-231ENST00000568422 SPAG9O60271 1321 aaKnown RBP27.09■■□□□ 1.93
CLN3-231ENST00000568422 HNRNPMP52272 730 aaKnown RBP eCLIP27.08■■□□□ 1.93
CLN3-231ENST00000568422 CEP162Q5TB80 1403 aa27.07■■□□□ 1.92
CLN3-231ENST00000568422 UHRF1BP1Q6BDS2 1440 aa27.07■■□□□ 1.92
CLN3-231ENST00000568422 CNTLNQ9NXG0 1405 aa27.07■■□□□ 1.92
CLN3-231ENST00000568422 EHBP1L1Q8N3D4 1523 aa27.06■■□□□ 1.92
CLN3-231ENST00000568422 ATP7AQ04656 1500 aa27.05■■□□□ 1.92
CLN3-231ENST00000568422 INO80Q9ULG1 1556 aaPredicted RBP27.03■■□□□ 1.92
CLN3-231ENST00000568422 TIAM1Q13009 1591 aa27.02■■□□□ 1.92
CLN3-231ENST00000568422 SUPT6HQ7KZ85 1726 aaKnown RBP27.02■■□□□ 1.92
CLN3-231ENST00000568422 MROH2AA6NES4 1674 aa27.01■■□□□ 1.92
CLN3-231ENST00000568422 DMRT2Q9Y5R5 561 aa27■■□□□ 1.91
CLN3-231ENST00000568422 STRCQ7RTU9 1775 aa26.99■■□□□ 1.91
CLN3-231ENST00000568422 PLXNC1O60486 1568 aa26.98■■□□□ 1.91
CLN3-231ENST00000568422 ADGBQ8N7X0 1667 aa26.97■■□□□ 1.91
CLN3-231ENST00000568422 A2MP01023 1474 aa26.96■■□□□ 1.91
CLN3-231ENST00000568422 NPATQ14207 1427 aa26.93■■□□□ 1.9
CLN3-231ENST00000568422 CERKQ8TCT0 537 aa26.92■■□□□ 1.9
CLN3-231ENST00000568422 MBD5Q9P267 1494 aa26.92■■□□□ 1.9
CLN3-231ENST00000568422 ZNF644Q9H582 1327 aaPredicted RBP26.9■■□□□ 1.9
CLN3-231ENST00000568422 ZMYM3Q14202 1370 aa26.9■■□□□ 1.9
CLN3-231ENST00000568422 RTEL1-TNFRSF6BF6WH68 1400 aa26.9■■□□□ 1.9
CLN3-231ENST00000568422 CLTCQ00610 1675 aaKnown RBP26.89■■□□□ 1.89
CLN3-231ENST00000568422 PPP6R1Q9UPN7 881 aa26.88■■□□□ 1.89
CLN3-231ENST00000568422 NCOA2Q15596 1464 aa26.87■■□□□ 1.89
CLN3-231ENST00000568422 PTPRTO14522 1441 aa26.85■■□□□ 1.89
CLN3-231ENST00000568422 RSPH4AQ5TD94 716 aa26.85■■□□□ 1.89
CLN3-231ENST00000568422 GGT6Q6P531 493 aa26.83■■□□□ 1.89
CLN3-231ENST00000568422 VPS8Q8N3P4 1428 aa26.82■■□□□ 1.88
CLN3-231ENST00000568422 CCDC141Q6ZP82 1450 aa26.81■■□□□ 1.88
CLN3-231ENST00000568422 CAMSAP2Q08AD1 1489 aa26.81■■□□□ 1.88
CLN3-231ENST00000568422 DHX29Q7Z478 1369 aaKnown RBP26.8■■□□□ 1.88
CLN3-231ENST00000568422 NCOA1Q15788 1441 aa26.8■■□□□ 1.88
CLN3-231ENST00000568422 ZNF142P52746 1687 aaPredicted RBP26.77■■□□□ 1.88
CLN3-231ENST00000568422 CAMSAP1Q5T5Y3 1602 aa26.76■■□□□ 1.87
CLN3-231ENST00000568422 PTPRKQ15262 1439 aa26.76■■□□□ 1.87
CLN3-231ENST00000568422 MYO3AQ8NEV4 1616 aa26.76■■□□□ 1.87
CLN3-231ENST00000568422 ARHGEF5Q12774 1597 aa26.75■■□□□ 1.87
CLN3-231ENST00000568422 LRRC9Q6ZRR7 1453 aa26.75■■□□□ 1.87
CLN3-231ENST00000568422 LOC105371045A0A1W2PR82 267 aa26.75■■□□□ 1.87
CLN3-231ENST00000568422 MAP3K1Q13233 1512 aa26.74■■□□□ 1.87
CLN3-231ENST00000568422 FAM135AQ9P2D6 1515 aa26.73■■□□□ 1.87
CLN3-231ENST00000568422 TSPY4P0CV99 314 aa26.7■■□□□ 1.86
CLN3-231ENST00000568422 TSPY10P0CW01 314 aa26.7■■□□□ 1.86
CLN3-231ENST00000568422 CEP170BQ9Y4F5 1589 aaPredicted RBP26.7■■□□□ 1.86
CLN3-231ENST00000568422 KIF3BO15066 747 aa26.69■■□□□ 1.86
CLN3-231ENST00000568422 PLA2R1Q13018 1463 aa26.68■■□□□ 1.86
CLN3-231ENST00000568422 KDM5DQ9BY66 1539 aa26.66■■□□□ 1.86
Retrieved 100 of 20,778 RNA–protein pairs in 294.1 ms