RNA–Protein interactions for RNA: ENST00000568034.1

COMMD4-222, Transcript of COMM domain containing 4, human

TSL 5

Gene COMMD4, Length 1,085 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
COMMD4-222	ENST00000568034	ARHGAP5	Q13017	1502 aa		28.08	■■■□□ 2.09
COMMD4-222	ENST00000568034	CFAP74	Q9C0B2	1584 aa		28.07	■■■□□ 2.08
COMMD4-222	ENST00000568034	ITSN2	Q9NZM3	1697 aa		28.07	■■■□□ 2.08
COMMD4-222	ENST00000568034	COL17A1	Q9UMD9	1497 aa	Predicted RBP	28.05	■■■□□ 2.08
COMMD4-222	ENST00000568034	PHLDB1	Q86UU1	1377 aa		28.04	■■■□□ 2.08
COMMD4-222	ENST00000568034	AKNA	Q7Z591	1439 aa		28.03	■■■□□ 2.08
COMMD4-222	ENST00000568034	EFCAB2	Q5VUJ9	269 aa		28.02	■■■□□ 2.08
COMMD4-222	ENST00000568034	MYOM3	Q5VTT5	1437 aa		28.01	■■■□□ 2.07
COMMD4-222	ENST00000568034	SAMD9L	Q8IVG5	1584 aa		28	■■■□□ 2.07
COMMD4-222	ENST00000568034	PPARGC1B	Q86YN6	1023 aa	Known RBP	28	■■■□□ 2.07
COMMD4-222	ENST00000568034	KDM6B	O15054	1643 aa		27.99	■■■□□ 2.07
COMMD4-222	ENST00000568034	CFDP1	Q9UEE9	299 aa	Predicted RBP	27.98	■■■□□ 2.07
COMMD4-222	ENST00000568034	ABCC1	P33527	1531 aa		27.97	■■■□□ 2.07
COMMD4-222	ENST00000568034	ADGRL1	O94910	1474 aa		27.96	■■■□□ 2.07
COMMD4-222	ENST00000568034	ARHGEF12	Q9NZN5	1544 aa		27.94	■■■□□ 2.06
COMMD4-222	ENST00000568034	FRMPD1	Q5SYB0	1578 aa		27.94	■■■□□ 2.06
COMMD4-222	ENST00000568034	MIA2	Q96PC5	1412 aa		27.93	■■■□□ 2.06
COMMD4-222	ENST00000568034	SCAPER	Q9BY12	1400 aa		27.92	■■■□□ 2.06
COMMD4-222	ENST00000568034	ZNF644	Q9H582	1327 aa	Predicted RBP	27.92	■■■□□ 2.06
COMMD4-222	ENST00000568034	ZNF777	Q9ULD5	760 aa	Predicted RBP	27.9	■■■□□ 2.06
COMMD4-222	ENST00000568034	FGD6	Q6ZV73	1430 aa		27.9	■■■□□ 2.06
COMMD4-222	ENST00000568034	RICTOR	Q6R327	1708 aa		27.89	■■■□□ 2.06
COMMD4-222	ENST00000568034	DENND4B	O75064	1496 aa	Predicted RBP	27.89	■■■□□ 2.06
COMMD4-222	ENST00000568034	CAMSAP2	Q08AD1	1489 aa		27.89	■■■□□ 2.06
COMMD4-222	ENST00000568034	SYCP2	Q9BX26	1530 aa		27.89	■■■□□ 2.06
COMMD4-222	ENST00000568034	POGZ	Q7Z3K3	1410 aa		27.88	■■■□□ 2.05
COMMD4-222	ENST00000568034	KIAA1107	Q9UPP5	1409 aa		27.88	■■■□□ 2.05
COMMD4-222	ENST00000568034	PLEKHH2	Q8IVE3	1493 aa		27.87	■■■□□ 2.05
COMMD4-222	ENST00000568034	RAPGEF3	O95398	923 aa		27.85	■■■□□ 2.05
COMMD4-222	ENST00000568034	PTPN23	Q9H3S7	1636 aa		27.85	■■■□□ 2.05
COMMD4-222	ENST00000568034	TRAPPC8	Q9Y2L5	1435 aa		27.84	■■■□□ 2.05
COMMD4-222	ENST00000568034	TCOF1	Q13428	1488 aa	Known RBP	27.84	■■■□□ 2.05
COMMD4-222	ENST00000568034	MBD5	Q9P267	1494 aa		27.84	■■■□□ 2.05
COMMD4-222	ENST00000568034	KDM5C	P41229	1560 aa		27.82	■■■□□ 2.04
COMMD4-222	ENST00000568034	ZNF518A	Q6AHZ1	1483 aa		27.8	■■■□□ 2.04
COMMD4-222	ENST00000568034	ZMYM4	Q5VZL5	1548 aa		27.8	■■■□□ 2.04
COMMD4-222	ENST00000568034	HNRNPM	P52272	730 aa	Known RBP eCLIP	27.79	■■■□□ 2.04
COMMD4-222	ENST00000568034	ARHGEF5	Q12774	1597 aa		27.77	■■■□□ 2.04
COMMD4-222	ENST00000568034	AFAP1	Q8N556	730 aa		27.76	■■■□□ 2.03
COMMD4-222	ENST00000568034	RRBP1	Q9P2E9	1410 aa	Known RBP	27.74	■■■□□ 2.03
COMMD4-222	ENST00000568034	CCDC141	Q6ZP82	1450 aa		27.73	■■■□□ 2.03
COMMD4-222	ENST00000568034	HECW2	Q9P2P5	1572 aa		27.7	■■■□□ 2.03
COMMD4-222	ENST00000568034	MLH3	Q9UHC1	1453 aa		27.7	■■■□□ 2.02
COMMD4-222	ENST00000568034	MAGI2	Q86UL8	1455 aa		27.69	■■■□□ 2.02
COMMD4-222	ENST00000568034	INO80	Q9ULG1	1556 aa	Predicted RBP	27.68	■■■□□ 2.02
COMMD4-222	ENST00000568034	YEATS2	Q9ULM3	1422 aa		27.67	■■■□□ 2.02
COMMD4-222	ENST00000568034	ARHGEF40	Q8TER5	1519 aa		27.67	■■■□□ 2.02
COMMD4-222	ENST00000568034	DNMT1	P26358	1616 aa	Known RBP	27.67	■■■□□ 2.02
COMMD4-222	ENST00000568034	ZFYVE16	Q7Z3T8	1539 aa		27.67	■■■□□ 2.02
COMMD4-222	ENST00000568034	ABCC5	O15440	1437 aa		27.67	■■■□□ 2.02
COMMD4-222	ENST00000568034	KIDINS220	Q9ULH0	1771 aa		27.65	■■■□□ 2.02
COMMD4-222	ENST00000568034	DROSHA	Q9NRR4	1374 aa	Known RBP eCLIP	27.65	■■■□□ 2.02
COMMD4-222	ENST00000568034	RSPH4A	Q5TD94	716 aa		27.65	■■■□□ 2.02
COMMD4-222	ENST00000568034	CROCC2	H7BZ55	1655 aa		27.64	■■■□□ 2.02
COMMD4-222	ENST00000568034	DAPK1	P53355	1430 aa		27.64	■■■□□ 2.02
COMMD4-222	ENST00000568034	FAM50A	Q14320	339 aa	Known RBP	27.63	■■■□□ 2.01
COMMD4-222	ENST00000568034	ATP7A	Q04656	1500 aa		27.62	■■■□□ 2.01
COMMD4-222	ENST00000568034	MAST1	Q9Y2H9	1570 aa		27.62	■■■□□ 2.01
COMMD4-222	ENST00000568034	ABCA6	Q8N139	1617 aa		27.62	■■■□□ 2.01
COMMD4-222	ENST00000568034	SPAG9	O60271	1321 aa	Known RBP	27.62	■■■□□ 2.01
COMMD4-222	ENST00000568034	SHANK2	Q9UPX8	1470 aa		27.61	■■■□□ 2.01
COMMD4-222	ENST00000568034	DIP2C	Q9Y2E4	1556 aa		27.6	■■■□□ 2.01
COMMD4-222	ENST00000568034	RTEL1-TNFRSF6B	F6WH68	1400 aa		27.6	■■■□□ 2.01
COMMD4-222	ENST00000568034	C9orf84	Q5VXU9	1444 aa		27.58	■■■□□ 2
COMMD4-222	ENST00000568034	PTPRK	Q15262	1439 aa		27.57	■■■□□ 2
COMMD4-222	ENST00000568034	SIGLEC1	Q9BZZ2	1709 aa		27.53	■■■□□ 2
COMMD4-222	ENST00000568034	ATP10A	O60312	1499 aa		27.53	■■■□□ 2
COMMD4-222	ENST00000568034	TSPY4	P0CV99	314 aa		27.52	■■■□□ 2
COMMD4-222	ENST00000568034	TSPY10	P0CW01	314 aa		27.52	■■■□□ 2
COMMD4-222	ENST00000568034	RERE	Q9P2R6	1566 aa		27.52	■■■□□ 2
COMMD4-222	ENST00000568034	PLXNC1	O60486	1568 aa		27.51	■■□□□ 1.99
COMMD4-222	ENST00000568034	ADGB	Q8N7X0	1667 aa		27.5	■■□□□ 1.99
COMMD4-222	ENST00000568034	MYT1L	Q9UL68	1186 aa		27.5	■■□□□ 1.99
COMMD4-222	ENST00000568034	ADGRL2	O95490	1459 aa		27.49	■■□□□ 1.99
COMMD4-222	ENST00000568034	A2M	P01023	1474 aa		27.44	■■□□□ 1.98
COMMD4-222	ENST00000568034	CHIC2	Q9UKJ5	165 aa		27.44	■■□□□ 1.98
COMMD4-222	ENST00000568034	NCOA1	Q15788	1441 aa		27.43	■■□□□ 1.98
COMMD4-222	ENST00000568034	AGL	P35573	1532 aa		27.41	■■□□□ 1.98
COMMD4-222	ENST00000568034	ITGAE	P38570	1179 aa		27.4	■■□□□ 1.98
COMMD4-222	ENST00000568034	AEBP2	Q6ZN18	517 aa	Predicted RBP	27.4	■■□□□ 1.98
COMMD4-222	ENST00000568034	ROCK1	Q13464	1354 aa		27.39	■■□□□ 1.98
COMMD4-222	ENST00000568034	DHX29	Q7Z478	1369 aa	Known RBP	27.39	■■□□□ 1.98
COMMD4-222	ENST00000568034	ANKRD30A	Q9BXX3	1397 aa		27.39	■■□□□ 1.98
COMMD4-222	ENST00000568034	KIF15	Q9NS87	1388 aa		27.39	■■□□□ 1.98
COMMD4-222	ENST00000568034	DUOX2	Q9NRD8	1548 aa		27.37	■■□□□ 1.97
COMMD4-222	ENST00000568034	RRP7BP	Q9NSQ0	103 aa		27.35	■■□□□ 1.97
COMMD4-222	ENST00000568034	BCORL1	Q5H9F3	1711 aa		27.33	■■□□□ 1.96
COMMD4-222	ENST00000568034	ERBIN	Q96RT1	1412 aa		27.3	■■□□□ 1.96
COMMD4-222	ENST00000568034	EIF2AK4	Q9P2K8	1649 aa	Known RBP	27.3	■■□□□ 1.96
COMMD4-222	ENST00000568034	ARID4B	Q4LE39	1312 aa	Predicted RBP	27.29	■■□□□ 1.96
COMMD4-222	ENST00000568034	ADAMTSL3	P82987	1691 aa		27.26	■■□□□ 1.95
COMMD4-222	ENST00000568034	NAIP	Q13075	1403 aa		27.24	■■□□□ 1.95
COMMD4-222	ENST00000568034	ANKRD50	Q9ULJ7	1429 aa		27.24	■■□□□ 1.95
COMMD4-222	ENST00000568034	GCC2	Q8IWJ2	1684 aa		27.24	■■□□□ 1.95
COMMD4-222	ENST00000568034	RNF17	Q9BXT8	1623 aa	Known RBP	27.24	■■□□□ 1.95
COMMD4-222	ENST00000568034	HFM1	A2PYH4	1435 aa		27.24	■■□□□ 1.95
COMMD4-222	ENST00000568034	KIF3B	O15066	747 aa		27.22	■■□□□ 1.95
COMMD4-222	ENST00000568034	MROH1	Q8NDA8	1641 aa		27.22	■■□□□ 1.95
COMMD4-222	ENST00000568034	MLEC	Q14165	292 aa		27.21	■■□□□ 1.95
COMMD4-222	ENST00000568034	DEPDC5	O75140	1603 aa		27.19	■■□□□ 1.94

Retrieved 100 of 20,778 RNA–protein pairs in 54.2 ms