RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 CLIP1P30622 1438 aa26.23■■□□□ 1.79
CLN3-229ENST00000567963 CASKIN1Q8WXD9 1431 aa26.23■■□□□ 1.79
CLN3-229ENST00000567963 YEATS2Q9ULM3 1422 aa26.23■■□□□ 1.79
CLN3-229ENST00000567963 ZFYVE16Q7Z3T8 1539 aa26.22■■□□□ 1.79
CLN3-229ENST00000567963 POGZQ7Z3K3 1410 aa26.22■■□□□ 1.79
CLN3-229ENST00000567963 MADDQ8WXG6 1647 aa26.21■■□□□ 1.79
CLN3-229ENST00000567963 PCF11O94913 1555 aaKnown RBP26.19■■□□□ 1.78
CLN3-229ENST00000567963 CCDC18Q5T9S5 1454 aa26.17■■□□□ 1.78
CLN3-229ENST00000567963 ARHGAP5Q13017 1502 aa26.15■■□□□ 1.78
CLN3-229ENST00000567963 SIGLEC1Q9BZZ2 1709 aa26.15■■□□□ 1.78
CLN3-229ENST00000567963 RIMS1Q86UR5 1692 aaKnown RBP26.12■■□□□ 1.77
CLN3-229ENST00000567963 CDC42BPBQ9Y5S2 1711 aa26.11■■□□□ 1.77
CLN3-229ENST00000567963 ZNF518AQ6AHZ1 1483 aa26.11■■□□□ 1.77
CLN3-229ENST00000567963 FYCO1Q9BQS8 1478 aa26.11■■□□□ 1.77
CLN3-229ENST00000567963 ATP10AO60312 1499 aa26.1■■□□□ 1.77
CLN3-229ENST00000567963 AFAP1Q8N556 730 aa26.1■■□□□ 1.77
CLN3-229ENST00000567963 MLECQ14165 292 aa26.07■■□□□ 1.76
CLN3-229ENST00000567963 ILDR1Q86SU0 546 aaPredicted RBP26.07■■□□□ 1.76
CLN3-229ENST00000567963 C9orf84Q5VXU9 1444 aa26.06■■□□□ 1.76
CLN3-229ENST00000567963 KDM5CP41229 1560 aa26.05■■□□□ 1.76
CLN3-229ENST00000567963 PREX2Q70Z35 1606 aa26.05■■□□□ 1.76
CLN3-229ENST00000567963 LMTK3Q96Q04 1460 aa26.01■■□□□ 1.75
CLN3-229ENST00000567963 MYT1LQ9UL68 1186 aa26■■□□□ 1.75
CLN3-229ENST00000567963 CDC42BPAQ5VT25 1732 aa26■■□□□ 1.75
CLN3-229ENST00000567963 PLPPR3Q6T4P5 718 aa25.99■■□□□ 1.75
CLN3-229ENST00000567963 FER1L4A9Z1Z3 1794 aa25.99■■□□□ 1.75
CLN3-229ENST00000567963 ARHGEF12Q9NZN5 1544 aa25.99■■□□□ 1.75
CLN3-229ENST00000567963 ABCC1P33527 1531 aa25.98■■□□□ 1.75
CLN3-229ENST00000567963 MLH3Q9UHC1 1453 aa25.97■■□□□ 1.75
CLN3-229ENST00000567963 TRAPPC8Q9Y2L5 1435 aa25.97■■□□□ 1.75
CLN3-229ENST00000567963 DIP2CQ9Y2E4 1556 aa25.95■■□□□ 1.74
CLN3-229ENST00000567963 ITSN2Q9NZM3 1697 aa25.94■■□□□ 1.74
CLN3-229ENST00000567963 GPATCH8Q9UKJ3 1502 aaKnown RBP25.92■■□□□ 1.74
CLN3-229ENST00000567963 REREQ9P2R6 1566 aa25.91■■□□□ 1.74
CLN3-229ENST00000567963 ABCA6Q8N139 1617 aa25.91■■□□□ 1.74
CLN3-229ENST00000567963 ZNF777Q9ULD5 760 aaPredicted RBP25.91■■□□□ 1.74
CLN3-229ENST00000567963 HSPA2P54652 639 aa25.88■■□□□ 1.73
CLN3-229ENST00000567963 SAMD9LQ8IVG5 1584 aa25.87■■□□□ 1.73
CLN3-229ENST00000567963 MTUS2Q5JR59 1369 aa25.87■■□□□ 1.73
CLN3-229ENST00000567963 KIDINS220Q9ULH0 1771 aa25.86■■□□□ 1.73
CLN3-229ENST00000567963 CEP162Q5TB80 1403 aa25.86■■□□□ 1.73
CLN3-229ENST00000567963 CEBPAP49715 358 aaPredicted RBP25.85■■□□□ 1.73
CLN3-229ENST00000567963 CFDP1Q9UEE9 299 aaPredicted RBP25.85■■□□□ 1.73
CLN3-229ENST00000567963 CCNB3Q8WWL7 1395 aa25.84■■□□□ 1.73
CLN3-229ENST00000567963 HNRNPMP52272 730 aaKnown RBP eCLIP25.84■■□□□ 1.73
CLN3-229ENST00000567963 AGLP35573 1532 aa25.84■■□□□ 1.73
CLN3-229ENST00000567963 SYCP2Q9BX26 1530 aa25.83■■□□□ 1.73
CLN3-229ENST00000567963 KIAA1107Q9UPP5 1409 aa25.81■■□□□ 1.72
CLN3-229ENST00000567963 SPAG9O60271 1321 aaKnown RBP25.79■■□□□ 1.72
CLN3-229ENST00000567963 PLEKHH2Q8IVE3 1493 aa25.78■■□□□ 1.72
CLN3-229ENST00000567963 PREX1Q8TCU6 1659 aa25.77■■□□□ 1.72
CLN3-229ENST00000567963 ESF1Q9H501 851 aaKnown RBP25.75■■□□□ 1.71
CLN3-229ENST00000567963 EHBP1L1Q8N3D4 1523 aa25.75■■□□□ 1.71
CLN3-229ENST00000567963 SETD1BQ9UPS6 1966 aaKnown RBP25.74■■□□□ 1.71
CLN3-229ENST00000567963 FBXO41Q8TF61 875 aa25.73■■□□□ 1.71
CLN3-229ENST00000567963 TIAM1Q13009 1591 aa25.73■■□□□ 1.71
CLN3-229ENST00000567963 C3P01024 1663 aa25.71■■□□□ 1.71
CLN3-229ENST00000567963 ATP7AQ04656 1500 aa25.71■■□□□ 1.71
CLN3-229ENST00000567963 ZNF644Q9H582 1327 aaPredicted RBP25.71■■□□□ 1.71
CLN3-229ENST00000567963 LOC105371045A0A1W2PR82 267 aa25.7■■□□□ 1.7
CLN3-229ENST00000567963 UHRF1BP1Q6BDS2 1440 aa25.69■■□□□ 1.7
CLN3-229ENST00000567963 INO80Q9ULG1 1556 aaPredicted RBP25.68■■□□□ 1.7
CLN3-229ENST00000567963 CNTLNQ9NXG0 1405 aa25.68■■□□□ 1.7
CLN3-229ENST00000567963 SUPT6HQ7KZ85 1726 aaKnown RBP25.67■■□□□ 1.7
CLN3-229ENST00000567963 MBD5Q9P267 1494 aa25.65■■□□□ 1.7
CLN3-229ENST00000567963 A2MP01023 1474 aa25.64■■□□□ 1.7
CLN3-229ENST00000567963 PLXNC1O60486 1568 aa25.63■■□□□ 1.69
CLN3-229ENST00000567963 NCOA2Q15596 1464 aa25.61■■□□□ 1.69
CLN3-229ENST00000567963 STRCQ7RTU9 1775 aa25.6■■□□□ 1.69
CLN3-229ENST00000567963 ZMYM3Q14202 1370 aa25.59■■□□□ 1.69
CLN3-229ENST00000567963 MROH2AA6NES4 1674 aa25.59■■□□□ 1.69
CLN3-229ENST00000567963 VPS8Q8N3P4 1428 aa25.58■■□□□ 1.69
CLN3-229ENST00000567963 ADGBQ8N7X0 1667 aa25.58■■□□□ 1.69
CLN3-229ENST00000567963 DMRT2Q9Y5R5 561 aa25.58■■□□□ 1.69
CLN3-229ENST00000567963 RTEL1-TNFRSF6BF6WH68 1400 aa25.58■■□□□ 1.68
CLN3-229ENST00000567963 GGT6Q6P531 493 aa25.57■■□□□ 1.68
CLN3-229ENST00000567963 NPATQ14207 1427 aa25.55■■□□□ 1.68
CLN3-229ENST00000567963 RSPH4AQ5TD94 716 aa25.54■■□□□ 1.68
CLN3-229ENST00000567963 CERKQ8TCT0 537 aa25.53■■□□□ 1.68
CLN3-229ENST00000567963 PPP6R1Q9UPN7 881 aa25.53■■□□□ 1.68
CLN3-229ENST00000567963 CAMSAP2Q08AD1 1489 aa25.53■■□□□ 1.68
CLN3-229ENST00000567963 CLTCQ00610 1675 aaKnown RBP25.53■■□□□ 1.68
CLN3-229ENST00000567963 LRRC9Q6ZRR7 1453 aa25.52■■□□□ 1.68
CLN3-229ENST00000567963 DHX29Q7Z478 1369 aaKnown RBP25.51■■□□□ 1.67
CLN3-229ENST00000567963 CCDC141Q6ZP82 1450 aa25.51■■□□□ 1.67
CLN3-229ENST00000567963 KANK4Q5T7N3 995 aaPredicted RBP25.47■■□□□ 1.67
CLN3-229ENST00000567963 MAP3K1Q13233 1512 aa25.46■■□□□ 1.67
CLN3-229ENST00000567963 PTPRTO14522 1441 aa25.45■■□□□ 1.67
CLN3-229ENST00000567963 PTPRKQ15262 1439 aa25.45■■□□□ 1.66
CLN3-229ENST00000567963 ARHGEF5Q12774 1597 aa25.44■■□□□ 1.66
CLN3-229ENST00000567963 KIF3BO15066 747 aa25.43■■□□□ 1.66
CLN3-229ENST00000567963 TSPY4P0CV99 314 aa25.43■■□□□ 1.66
CLN3-229ENST00000567963 TSPY10P0CW01 314 aa25.43■■□□□ 1.66
CLN3-229ENST00000567963 NCOA1Q15788 1441 aa25.43■■□□□ 1.66
CLN3-229ENST00000567963 CAMSAP1Q5T5Y3 1602 aa25.41■■□□□ 1.66
CLN3-229ENST00000567963 MYO3AQ8NEV4 1616 aa25.38■■□□□ 1.65
CLN3-229ENST00000567963 ZNF142P52746 1687 aaPredicted RBP25.36■■□□□ 1.65
CLN3-229ENST00000567963 MIA2Q96PC5 1412 aa25.35■■□□□ 1.65
CLN3-229ENST00000567963 CEP170BQ9Y4F5 1589 aaPredicted RBP25.35■■□□□ 1.65
CLN3-229ENST00000567963 MYOM3Q5VTT5 1437 aa25.34■■□□□ 1.65
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms