RNA–Protein interactions for RNA: ENST00000567635.5

SF3B3-209, Transcript of splicing factor 3b subunit 3, human

TSL 5

Gene SF3B3, Length 630 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SF3B3-209	ENST00000567635	SCAPER	Q9BY12	1400 aa		11.1	□□□□□ -0.63
SF3B3-209	ENST00000567635	LOC105371045	A0A1W2PR82	267 aa		11.1	□□□□□ -0.63
SF3B3-209	ENST00000567635	ARID4B	Q4LE39	1312 aa	Predicted RBP	11.09	□□□□□ -0.63
SF3B3-209	ENST00000567635	CDC42BPB	Q9Y5S2	1711 aa		11.09	□□□□□ -0.63
SF3B3-209	ENST00000567635	ARHGAP5	Q13017	1502 aa		11.07	□□□□□ -0.64
SF3B3-209	ENST00000567635	CEP162	Q5TB80	1403 aa		11.07	□□□□□ -0.64
SF3B3-209	ENST00000567635	MAGI2	Q86UL8	1455 aa		11.06	□□□□□ -0.64
SF3B3-209	ENST00000567635	ZMYM4	Q5VZL5	1548 aa		11.05	□□□□□ -0.64
SF3B3-209	ENST00000567635	CDC42BPA	Q5VT25	1732 aa		11.05	□□□□□ -0.64
SF3B3-209	ENST00000567635	POGZ	Q7Z3K3	1410 aa		11.05	□□□□□ -0.64
SF3B3-209	ENST00000567635	AFAP1	Q8N556	730 aa		11.05	□□□□□ -0.64
SF3B3-209	ENST00000567635	ADAMTSL3	P82987	1691 aa		11.04	□□□□□ -0.64
SF3B3-209	ENST00000567635	BCORL1	Q5H9F3	1711 aa		11.04	□□□□□ -0.64
SF3B3-209	ENST00000567635	ZFYVE16	Q7Z3T8	1539 aa		11.04	□□□□□ -0.64
SF3B3-209	ENST00000567635	ARHGEF40	Q8TER5	1519 aa		11.04	□□□□□ -0.64
SF3B3-209	ENST00000567635	YEATS2	Q9ULM3	1422 aa		11.03	□□□□□ -0.64
SF3B3-209	ENST00000567635	PREX2	Q70Z35	1606 aa		11.03	□□□□□ -0.64
SF3B3-209	ENST00000567635	MYT1L	Q9UL68	1186 aa		11.03	□□□□□ -0.64
SF3B3-209	ENST00000567635	MTUS2	Q5JR59	1369 aa		11.03	□□□□□ -0.64
SF3B3-209	ENST00000567635	ZNF518A	Q6AHZ1	1483 aa		11.02	□□□□□ -0.65
SF3B3-209	ENST00000567635	ZNF777	Q9ULD5	760 aa	Predicted RBP	11.02	□□□□□ -0.65
SF3B3-209	ENST00000567635	ATP10A	O60312	1499 aa		11.01	□□□□□ -0.65
SF3B3-209	ENST00000567635	GPATCH8	Q9UKJ3	1502 aa	Known RBP	11	□□□□□ -0.65
SF3B3-209	ENST00000567635	CFDP1	Q9UEE9	299 aa	Predicted RBP	11	□□□□□ -0.65
SF3B3-209	ENST00000567635	CCNB3	Q8WWL7	1395 aa		11	□□□□□ -0.65
SF3B3-209	ENST00000567635	PTPRM	P28827	1452 aa		11	□□□□□ -0.65
SF3B3-209	ENST00000567635	MLEC	Q14165	292 aa		10.99	□□□□□ -0.65
SF3B3-209	ENST00000567635	KDM5C	P41229	1560 aa		10.99	□□□□□ -0.65
SF3B3-209	ENST00000567635	ITSN2	Q9NZM3	1697 aa		10.98	□□□□□ -0.65
SF3B3-209	ENST00000567635	SIGLEC1	Q9BZZ2	1709 aa		10.98	□□□□□ -0.65
SF3B3-209	ENST00000567635	HNRNPM	P52272	730 aa	Known RBP eCLIP	10.98	□□□□□ -0.65	6e-7	■■■■□ 25.4
SF3B3-209	ENST00000567635	TRAPPC8	Q9Y2L5	1435 aa		10.98	□□□□□ -0.65
SF3B3-209	ENST00000567635	ARHGEF12	Q9NZN5	1544 aa		10.98	□□□□□ -0.65
SF3B3-209	ENST00000567635	MADD	Q8WXG6	1647 aa		10.98	□□□□□ -0.65
SF3B3-209	ENST00000567635	C9orf84	Q5VXU9	1444 aa		10.97	□□□□□ -0.65
SF3B3-209	ENST00000567635	MLH3	Q9UHC1	1453 aa		10.97	□□□□□ -0.65
SF3B3-209	ENST00000567635	ABCC1	P33527	1531 aa		10.97	□□□□□ -0.65
SF3B3-209	ENST00000567635	HECW2	Q9P2P5	1572 aa		10.97	□□□□□ -0.65
SF3B3-209	ENST00000567635	RIMS1	Q86UR5	1692 aa	Known RBP	10.97	□□□□□ -0.65
SF3B3-209	ENST00000567635	SETD1B	Q9UPS6	1966 aa	Known RBP	10.96	□□□□□ -0.66
SF3B3-209	ENST00000567635	SAMD9L	Q8IVG5	1584 aa		10.95	□□□□□ -0.66
SF3B3-209	ENST00000567635	FER1L4	A9Z1Z3	1794 aa		10.95	□□□□□ -0.66
SF3B3-209	ENST00000567635	KIDINS220	Q9ULH0	1771 aa		10.95	□□□□□ -0.66
SF3B3-209	ENST00000567635	EHBP1L1	Q8N3D4	1523 aa		10.94	□□□□□ -0.66
SF3B3-209	ENST00000567635	PLEKHH2	Q8IVE3	1493 aa		10.94	□□□□□ -0.66
SF3B3-209	ENST00000567635	VPS8	Q8N3P4	1428 aa		10.94	□□□□□ -0.66
SF3B3-209	ENST00000567635	KIAA1107	Q9UPP5	1409 aa		10.94	□□□□□ -0.66
SF3B3-209	ENST00000567635	SPAG9	O60271	1321 aa	Known RBP	10.94	□□□□□ -0.66
SF3B3-209	ENST00000567635	SUPT6H	Q7KZ85	1726 aa	Known RBP	10.93	□□□□□ -0.66
SF3B3-209	ENST00000567635	ZNF644	Q9H582	1327 aa	Predicted RBP	10.93	□□□□□ -0.66
SF3B3-209	ENST00000567635	DIP2C	Q9Y2E4	1556 aa		10.93	□□□□□ -0.66
SF3B3-209	ENST00000567635	SYCP2	Q9BX26	1530 aa		10.93	□□□□□ -0.66
SF3B3-209	ENST00000567635	ABCA6	Q8N139	1617 aa		10.92	□□□□□ -0.66
SF3B3-209	ENST00000567635	TIAM1	Q13009	1591 aa		10.92	□□□□□ -0.66
SF3B3-209	ENST00000567635	RERE	Q9P2R6	1566 aa		10.91	□□□□□ -0.66
SF3B3-209	ENST00000567635	NCOA2	Q15596	1464 aa		10.9	□□□□□ -0.66
SF3B3-209	ENST00000567635	PPP6R1	Q9UPN7	881 aa		10.9	□□□□□ -0.66
SF3B3-209	ENST00000567635	AGL	P35573	1532 aa		10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	MAP3K1	Q13233	1512 aa		10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	LRRC9	Q6ZRR7	1453 aa		10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	ADRA2B	P18089	450 aa		10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	APLP2	Q06481	763 aa		10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	KANK4	Q5T7N3	995 aa	Predicted RBP	10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	RSPH4A	Q5TD94	716 aa		10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	ESF1	Q9H501	851 aa	Known RBP	10.89	□□□□□ -0.67
SF3B3-209	ENST00000567635	CEBPA	P49715	358 aa	Predicted RBP	10.88	□□□□□ -0.67
SF3B3-209	ENST00000567635	ATP7A	Q04656	1500 aa		10.88	□□□□□ -0.67
SF3B3-209	ENST00000567635	MBD5	Q9P267	1494 aa		10.87	□□□□□ -0.67
SF3B3-209	ENST00000567635	INO80	Q9ULG1	1556 aa	Predicted RBP	10.86	□□□□□ -0.67
SF3B3-209	ENST00000567635	ADGB	Q8N7X0	1667 aa		10.85	□□□□□ -0.67
SF3B3-209	ENST00000567635	RTEL1-TNFRSF6B	F6WH68	1400 aa		10.85	□□□□□ -0.67
SF3B3-209	ENST00000567635	A2M	P01023	1474 aa		10.85	□□□□□ -0.67
SF3B3-209	ENST00000567635	LMTK3	Q96Q04	1460 aa		10.85	□□□□□ -0.67
SF3B3-209	ENST00000567635	TSPY4	P0CV99	314 aa		10.84	□□□□□ -0.67
SF3B3-209	ENST00000567635	TSPY10	P0CW01	314 aa		10.84	□□□□□ -0.67
SF3B3-209	ENST00000567635	HSPA2	P54652	639 aa		10.84	□□□□□ -0.67
SF3B3-209	ENST00000567635	CAMSAP2	Q08AD1	1489 aa		10.84	□□□□□ -0.67
SF3B3-209	ENST00000567635	C3	P01024	1663 aa		10.83	□□□□□ -0.68
SF3B3-209	ENST00000567635	GGT6	Q6P531	493 aa		10.83	□□□□□ -0.68
SF3B3-209	ENST00000567635	CNTLN	Q9NXG0	1405 aa		10.83	□□□□□ -0.68
SF3B3-209	ENST00000567635	PREX1	Q8TCU6	1659 aa		10.82	□□□□□ -0.68
SF3B3-209	ENST00000567635	CCDC141	Q6ZP82	1450 aa		10.81	□□□□□ -0.68
SF3B3-209	ENST00000567635	DHX29	Q7Z478	1369 aa	Known RBP	10.81	□□□□□ -0.68
SF3B3-209	ENST00000567635	MYOM3	Q5VTT5	1437 aa		10.81	□□□□□ -0.68
SF3B3-209	ENST00000567635	PLXNC1	O60486	1568 aa		10.81	□□□□□ -0.68
SF3B3-209	ENST00000567635	ARHGEF5	Q12774	1597 aa		10.81	□□□□□ -0.68
SF3B3-209	ENST00000567635	ZMYM3	Q14202	1370 aa		10.8	□□□□□ -0.68
SF3B3-209	ENST00000567635	MROH2A	A6NES4	1674 aa		10.8	□□□□□ -0.68
SF3B3-209	ENST00000567635	PIAS4	Q8N2W9	510 aa	Predicted RBP	10.8	□□□□□ -0.68
SF3B3-209	ENST00000567635	MIA2	Q96PC5	1412 aa		10.8	□□□□□ -0.68
SF3B3-209	ENST00000567635	KIF3B	O15066	747 aa		10.79	□□□□□ -0.68
SF3B3-209	ENST00000567635	ILDR1	Q86SU0	546 aa	Predicted RBP	10.79	□□□□□ -0.68
SF3B3-209	ENST00000567635	CLTC	Q00610	1675 aa	Known RBP	10.79	□□□□□ -0.68
SF3B3-209	ENST00000567635	UHRF1BP1	Q6BDS2	1440 aa		10.77	□□□□□ -0.68
SF3B3-209	ENST00000567635	CFAP65	Q6ZU64	1925 aa	Known RBP	10.76	□□□□□ -0.69
SF3B3-209	ENST00000567635	NPAT	Q14207	1427 aa		10.75	□□□□□ -0.69
SF3B3-209	ENST00000567635	DMRT2	Q9Y5R5	561 aa		10.75	□□□□□ -0.69
SF3B3-209	ENST00000567635	STRC	Q7RTU9	1775 aa		10.75	□□□□□ -0.69
SF3B3-209	ENST00000567635	MAST1	Q9Y2H9	1570 aa		10.74	□□□□□ -0.69
SF3B3-209	ENST00000567635	PTPN23	Q9H3S7	1636 aa		10.74	□□□□□ -0.69

Retrieved 100 of 20,778 RNA–protein pairs in 39 ms