RNA–Protein interactions for RNA: ENST00000567223.6

SMPD3-209, Transcript of sphingomyelin phosphodiesterase 3, humanhuman

TSL 2

Gene SMPD3, Length 530 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD3-209ENST00000567223 ADAMTSL3P82987 1691 aa30.19■■■□□ 2.42
SMPD3-209ENST00000567223 SCAPERQ9BY12 1400 aa30.19■■■□□ 2.42
SMPD3-209ENST00000567223 ZFYVE16Q7Z3T8 1539 aa30.16■■■□□ 2.42
SMPD3-209ENST00000567223 PREX2Q70Z35 1606 aa30.14■■■□□ 2.42
SMPD3-209ENST00000567223 BCORL1Q5H9F3 1711 aa30.14■■■□□ 2.42
SMPD3-209ENST00000567223 ARHGAP5Q13017 1502 aa30.14■■■□□ 2.42
SMPD3-209ENST00000567223 CDC42BPBQ9Y5S2 1711 aa30.12■■■□□ 2.41
SMPD3-209ENST00000567223 ZNF518AQ6AHZ1 1483 aa30.12■■■□□ 2.41
SMPD3-209ENST00000567223 KDM5CP41229 1560 aa30.11■■■□□ 2.41
SMPD3-209ENST00000567223 CEP162Q5TB80 1403 aa30.1■■■□□ 2.41
SMPD3-209ENST00000567223 YEATS2Q9ULM3 1422 aa30.08■■■□□ 2.41
SMPD3-209ENST00000567223 CDC42BPAQ5VT25 1732 aa30.04■■■□□ 2.4
SMPD3-209ENST00000567223 PTPRMP28827 1452 aa30.04■■■□□ 2.4
SMPD3-209ENST00000567223 ABCC1P33527 1531 aa30.03■■■□□ 2.4
SMPD3-209ENST00000567223 ATP10AO60312 1499 aa30■■■□□ 2.39
SMPD3-209ENST00000567223 MADDQ8WXG6 1647 aa30■■■□□ 2.39
SMPD3-209ENST00000567223 SIGLEC1Q9BZZ2 1709 aa29.99■■■□□ 2.39
SMPD3-209ENST00000567223 ARID4BQ4LE39 1312 aaPredicted RBP29.99■■■□□ 2.39
SMPD3-209ENST00000567223 HECW2Q9P2P5 1572 aa29.99■■■□□ 2.39
SMPD3-209ENST00000567223 MLH3Q9UHC1 1453 aa29.99■■■□□ 2.39
SMPD3-209ENST00000567223 C9orf84Q5VXU9 1444 aa29.98■■■□□ 2.39
SMPD3-209ENST00000567223 GPATCH8Q9UKJ3 1502 aaKnown RBP29.96■■■□□ 2.39
SMPD3-209ENST00000567223 REREQ9P2R6 1566 aa29.96■■■□□ 2.39
SMPD3-209ENST00000567223 ITSN2Q9NZM3 1697 aa29.95■■■□□ 2.39
SMPD3-209ENST00000567223 ARHGEF12Q9NZN5 1544 aa29.95■■■□□ 2.38
SMPD3-209ENST00000567223 EHBP1L1Q8N3D4 1523 aa29.93■■■□□ 2.38
SMPD3-209ENST00000567223 AFAP1Q8N556 730 aa29.93■■■□□ 2.38
SMPD3-209ENST00000567223 MTUS2Q5JR59 1369 aa29.92■■■□□ 2.38
SMPD3-209ENST00000567223 SAMD9LQ8IVG5 1584 aa29.9■■■□□ 2.38
SMPD3-209ENST00000567223 TRAPPC8Q9Y2L5 1435 aa29.89■■■□□ 2.38
SMPD3-209ENST00000567223 DIP2CQ9Y2E4 1556 aa29.89■■■□□ 2.38
SMPD3-209ENST00000567223 KIAA1107Q9UPP5 1409 aa29.88■■■□□ 2.37
SMPD3-209ENST00000567223 PLEKHH2Q8IVE3 1493 aa29.87■■■□□ 2.37
SMPD3-209ENST00000567223 RIMS1Q86UR5 1692 aaKnown RBP29.86■■■□□ 2.37
SMPD3-209ENST00000567223 CCNB3Q8WWL7 1395 aa29.85■■■□□ 2.37
SMPD3-209ENST00000567223 ABCA6Q8N139 1617 aa29.84■■■□□ 2.37
SMPD3-209ENST00000567223 AGLP35573 1532 aa29.82■■■□□ 2.36
SMPD3-209ENST00000567223 VPS8Q8N3P4 1428 aa29.82■■■□□ 2.36
SMPD3-209ENST00000567223 TIAM1Q13009 1591 aa29.81■■■□□ 2.36
SMPD3-209ENST00000567223 KIDINS220Q9ULH0 1771 aa29.81■■■□□ 2.36
SMPD3-209ENST00000567223 SYCP2Q9BX26 1530 aa29.81■■■□□ 2.36
SMPD3-209ENST00000567223 FER1L4A9Z1Z3 1794 aa29.8■■■□□ 2.36
SMPD3-209ENST00000567223 CFDP1Q9UEE9 299 aaPredicted RBP29.79■■■□□ 2.36
SMPD3-209ENST00000567223 LOC105371045A0A1W2PR82 267 aa29.77■■■□□ 2.36
SMPD3-209ENST00000567223 MAP3K1Q13233 1512 aa29.75■■■□□ 2.35
SMPD3-209ENST00000567223 LMTK3Q96Q04 1460 aa29.74■■■□□ 2.35
SMPD3-209ENST00000567223 SUPT6HQ7KZ85 1726 aaKnown RBP29.73■■■□□ 2.35
SMPD3-209ENST00000567223 ZNF777Q9ULD5 760 aaPredicted RBP29.72■■■□□ 2.35
SMPD3-209ENST00000567223 INO80Q9ULG1 1556 aaPredicted RBP29.71■■■□□ 2.35
SMPD3-209ENST00000567223 NCOA2Q15596 1464 aa29.69■■■□□ 2.34
SMPD3-209ENST00000567223 MYT1LQ9UL68 1186 aa29.69■■■□□ 2.34
SMPD3-209ENST00000567223 MBD5Q9P267 1494 aa29.68■■■□□ 2.34
SMPD3-209ENST00000567223 ATP7AQ04656 1500 aa29.68■■■□□ 2.34
SMPD3-209ENST00000567223 MLECQ14165 292 aa29.68■■■□□ 2.34
SMPD3-209ENST00000567223 SPAG9O60271 1321 aaKnown RBP29.68■■■□□ 2.34
SMPD3-209ENST00000567223 HNRNPMP52272 730 aaKnown RBP eCLIP29.67■■■□□ 2.34
SMPD3-209ENST00000567223 LRRC9Q6ZRR7 1453 aa29.66■■■□□ 2.34
SMPD3-209ENST00000567223 PLXNC1O60486 1568 aa29.64■■■□□ 2.33
SMPD3-209ENST00000567223 RTEL1-TNFRSF6BF6WH68 1400 aa29.61■■■□□ 2.33
SMPD3-209ENST00000567223 CNTLNQ9NXG0 1405 aa29.59■■■□□ 2.33
SMPD3-209ENST00000567223 ZNF644Q9H582 1327 aaPredicted RBP29.57■■■□□ 2.32
SMPD3-209ENST00000567223 RSPH4AQ5TD94 716 aa29.57■■■□□ 2.32
SMPD3-209ENST00000567223 A2MP01023 1474 aa29.56■■■□□ 2.32
SMPD3-209ENST00000567223 ADGBQ8N7X0 1667 aa29.56■■■□□ 2.32
SMPD3-209ENST00000567223 CAMSAP2Q08AD1 1489 aa29.55■■■□□ 2.32
SMPD3-209ENST00000567223 PREX1Q8TCU6 1659 aa29.55■■■□□ 2.32
SMPD3-209ENST00000567223 CCDC141Q6ZP82 1450 aa29.54■■■□□ 2.32
SMPD3-209ENST00000567223 ARHGEF5Q12774 1597 aa29.52■■■□□ 2.32
SMPD3-209ENST00000567223 MROH2AA6NES4 1674 aa29.51■■■□□ 2.31
SMPD3-209ENST00000567223 C3P01024 1663 aa29.51■■■□□ 2.31
SMPD3-209ENST00000567223 SETD1BQ9UPS6 1966 aaKnown RBP29.48■■■□□ 2.31
SMPD3-209ENST00000567223 MIA2Q96PC5 1412 aa29.47■■■□□ 2.31
SMPD3-209ENST00000567223 ESF1Q9H501 851 aaKnown RBP29.46■■■□□ 2.31
SMPD3-209ENST00000567223 PPP6R1Q9UPN7 881 aa29.46■■■□□ 2.31
SMPD3-209ENST00000567223 CEBPAP49715 358 aaPredicted RBP29.45■■■□□ 2.31
SMPD3-209ENST00000567223 KANK4Q5T7N3 995 aaPredicted RBP29.44■■■□□ 2.3
SMPD3-209ENST00000567223 DHX29Q7Z478 1369 aaKnown RBP29.43■■■□□ 2.3
SMPD3-209ENST00000567223 MYOM3Q5VTT5 1437 aa29.43■■■□□ 2.3
SMPD3-209ENST00000567223 UHRF1BP1Q6BDS2 1440 aa29.43■■■□□ 2.3
SMPD3-209ENST00000567223 NPATQ14207 1427 aa29.42■■■□□ 2.3
SMPD3-209ENST00000567223 PLPPR3Q6T4P5 718 aa29.41■■■□□ 2.3
SMPD3-209ENST00000567223 FAM135AQ9P2D6 1515 aa29.4■■■□□ 2.3
SMPD3-209ENST00000567223 MAST1Q9Y2H9 1570 aa29.39■■■□□ 2.29
SMPD3-209ENST00000567223 HSPA2P54652 639 aa29.38■■■□□ 2.29
SMPD3-209ENST00000567223 ZMYM3Q14202 1370 aa29.37■■■□□ 2.29
SMPD3-209ENST00000567223 TSPY4P0CV99 314 aa29.33■■■□□ 2.29
SMPD3-209ENST00000567223 TSPY10P0CW01 314 aa29.33■■■□□ 2.29
SMPD3-209ENST00000567223 CLTCQ00610 1675 aaKnown RBP29.33■■■□□ 2.29
SMPD3-209ENST00000567223 APLP2Q06481 763 aa29.31■■■□□ 2.28
SMPD3-209ENST00000567223 GGT6Q6P531 493 aa29.28■■■□□ 2.28
SMPD3-209ENST00000567223 ILDR1Q86SU0 546 aaPredicted RBP29.27■■■□□ 2.28
SMPD3-209ENST00000567223 PTPRKQ15262 1439 aa29.26■■■□□ 2.27
SMPD3-209ENST00000567223 STRCQ7RTU9 1775 aa29.25■■■□□ 2.27
SMPD3-209ENST00000567223 KDM5DQ9BY66 1539 aa29.24■■■□□ 2.27
SMPD3-209ENST00000567223 SHANK2Q9UPX8 1470 aa29.23■■■□□ 2.27
SMPD3-209ENST00000567223 EIF2AK4Q9P2K8 1649 aaKnown RBP29.23■■■□□ 2.27
SMPD3-209ENST00000567223 DMRT2Q9Y5R5 561 aa29.22■■■□□ 2.27
SMPD3-209ENST00000567223 TCOF1Q13428 1488 aaKnown RBP29.22■■■□□ 2.27
SMPD3-209ENST00000567223 ZNF142P52746 1687 aaPredicted RBP29.21■■■□□ 2.27
SMPD3-209ENST00000567223 PTPN23Q9H3S7 1636 aa29.21■■■□□ 2.27
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms