RNA–Protein interactions for RNA: ENST00000567023.5

COMMD4-216, Transcript of COMM domain containing 4, humanhuman

TSL 2

Gene COMMD4, Length 926 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COMMD4-216ENST00000567023 POGZQ7Z3K3 1410 aa23.15■■□□□ 1.3
COMMD4-216ENST00000567023 BCORL1Q5H9F3 1711 aa23.13■■□□□ 1.29
COMMD4-216ENST00000567023 ARID4BQ4LE39 1312 aaPredicted RBP23.13■■□□□ 1.29
COMMD4-216ENST00000567023 FYCO1Q9BQS8 1478 aa23.13■■□□□ 1.29
COMMD4-216ENST00000567023 HECW2Q9P2P5 1572 aa23.12■■□□□ 1.29
COMMD4-216ENST00000567023 PTPRMP28827 1452 aa23.11■■□□□ 1.29
COMMD4-216ENST00000567023 YEATS2Q9ULM3 1422 aa23.11■■□□□ 1.29
COMMD4-216ENST00000567023 ZFYVE16Q7Z3T8 1539 aa23.1■■□□□ 1.29
COMMD4-216ENST00000567023 ARHGAP5Q13017 1502 aa23.08■■□□□ 1.28
COMMD4-216ENST00000567023 ZNF518AQ6AHZ1 1483 aa23.05■■□□□ 1.28
COMMD4-216ENST00000567023 MADDQ8WXG6 1647 aa23.04■■□□□ 1.28
COMMD4-216ENST00000567023 CDC42BPBQ9Y5S2 1711 aa23.04■■□□□ 1.28
COMMD4-216ENST00000567023 AFAP1Q8N556 730 aa23.02■■□□□ 1.28
COMMD4-216ENST00000567023 ATP10AO60312 1499 aa23.02■■□□□ 1.28
COMMD4-216ENST00000567023 KDM5CP41229 1560 aa23.01■■□□□ 1.27
COMMD4-216ENST00000567023 PREX2Q70Z35 1606 aa23.01■■□□□ 1.27
COMMD4-216ENST00000567023 SIGLEC1Q9BZZ2 1709 aa23.01■■□□□ 1.27
COMMD4-216ENST00000567023 C9orf84Q5VXU9 1444 aa22.98■■□□□ 1.27
COMMD4-216ENST00000567023 ABCC1P33527 1531 aa22.95■■□□□ 1.26
COMMD4-216ENST00000567023 CDC42BPAQ5VT25 1732 aa22.95■■□□□ 1.26
COMMD4-216ENST00000567023 MLH3Q9UHC1 1453 aa22.95■■□□□ 1.26
COMMD4-216ENST00000567023 RIMS1Q86UR5 1692 aaKnown RBP22.94■■□□□ 1.26
COMMD4-216ENST00000567023 ARHGEF12Q9NZN5 1544 aa22.94■■□□□ 1.26
COMMD4-216ENST00000567023 GPATCH8Q9UKJ3 1502 aaKnown RBP22.93■■□□□ 1.26
COMMD4-216ENST00000567023 CEP162Q5TB80 1403 aa22.93■■□□□ 1.26
COMMD4-216ENST00000567023 TRAPPC8Q9Y2L5 1435 aa22.92■■□□□ 1.26
COMMD4-216ENST00000567023 MLECQ14165 292 aa22.91■■□□□ 1.26
COMMD4-216ENST00000567023 REREQ9P2R6 1566 aa22.89■■□□□ 1.26
COMMD4-216ENST00000567023 ITSN2Q9NZM3 1697 aa22.89■■□□□ 1.25
COMMD4-216ENST00000567023 DIP2CQ9Y2E4 1556 aa22.89■■□□□ 1.25
COMMD4-216ENST00000567023 MTUS2Q5JR59 1369 aa22.88■■□□□ 1.25
COMMD4-216ENST00000567023 LMTK3Q96Q04 1460 aa22.87■■□□□ 1.25
COMMD4-216ENST00000567023 MYT1LQ9UL68 1186 aa22.87■■□□□ 1.25
COMMD4-216ENST00000567023 FER1L4A9Z1Z3 1794 aa22.86■■□□□ 1.25
COMMD4-216ENST00000567023 SAMD9LQ8IVG5 1584 aa22.85■■□□□ 1.25
COMMD4-216ENST00000567023 KIAA1107Q9UPP5 1409 aa22.84■■□□□ 1.25
COMMD4-216ENST00000567023 ABCA6Q8N139 1617 aa22.84■■□□□ 1.25
COMMD4-216ENST00000567023 CFDP1Q9UEE9 299 aaPredicted RBP22.84■■□□□ 1.25
COMMD4-216ENST00000567023 ZNF777Q9ULD5 760 aaPredicted RBP22.84■■□□□ 1.25
COMMD4-216ENST00000567023 CCNB3Q8WWL7 1395 aa22.84■■□□□ 1.25
COMMD4-216ENST00000567023 KIDINS220Q9ULH0 1771 aa22.82■■□□□ 1.24
COMMD4-216ENST00000567023 AGLP35573 1532 aa22.82■■□□□ 1.24
COMMD4-216ENST00000567023 PLEKHH2Q8IVE3 1493 aa22.81■■□□□ 1.24
COMMD4-216ENST00000567023 HNRNPMP52272 730 aaKnown RBP eCLIP22.8■■□□□ 1.24
COMMD4-216ENST00000567023 EHBP1L1Q8N3D4 1523 aa22.8■■□□□ 1.24
COMMD4-216ENST00000567023 SYCP2Q9BX26 1530 aa22.8■■□□□ 1.24
COMMD4-216ENST00000567023 LOC105371045A0A1W2PR82 267 aa22.79■■□□□ 1.24
COMMD4-216ENST00000567023 PLPPR3Q6T4P5 718 aa22.77■■□□□ 1.24
COMMD4-216ENST00000567023 ILDR1Q86SU0 546 aaPredicted RBP22.77■■□□□ 1.24
COMMD4-216ENST00000567023 SPAG9O60271 1321 aaKnown RBP22.77■■□□□ 1.24
COMMD4-216ENST00000567023 TIAM1Q13009 1591 aa22.75■■□□□ 1.23
COMMD4-216ENST00000567023 CEBPAP49715 358 aaPredicted RBP22.73■■□□□ 1.23
COMMD4-216ENST00000567023 HSPA2P54652 639 aa22.71■■□□□ 1.23
COMMD4-216ENST00000567023 ZNF644Q9H582 1327 aaPredicted RBP22.71■■□□□ 1.23
COMMD4-216ENST00000567023 VPS8Q8N3P4 1428 aa22.71■■□□□ 1.23
COMMD4-216ENST00000567023 MBD5Q9P267 1494 aa22.7■■□□□ 1.22
COMMD4-216ENST00000567023 ATP7AQ04656 1500 aa22.7■■□□□ 1.22
COMMD4-216ENST00000567023 INO80Q9ULG1 1556 aaPredicted RBP22.69■■□□□ 1.22
COMMD4-216ENST00000567023 SETD1BQ9UPS6 1966 aaKnown RBP22.68■■□□□ 1.22
COMMD4-216ENST00000567023 NCOA2Q15596 1464 aa22.67■■□□□ 1.22
COMMD4-216ENST00000567023 CNTLNQ9NXG0 1405 aa22.67■■□□□ 1.22
COMMD4-216ENST00000567023 ESF1Q9H501 851 aaKnown RBP22.67■■□□□ 1.22
COMMD4-216ENST00000567023 PREX1Q8TCU6 1659 aa22.66■■□□□ 1.22
COMMD4-216ENST00000567023 SUPT6HQ7KZ85 1726 aaKnown RBP22.65■■□□□ 1.22
COMMD4-216ENST00000567023 PLXNC1O60486 1568 aa22.65■■□□□ 1.22
COMMD4-216ENST00000567023 A2MP01023 1474 aa22.65■■□□□ 1.22
COMMD4-216ENST00000567023 C3P01024 1663 aa22.64■■□□□ 1.21
COMMD4-216ENST00000567023 RTEL1-TNFRSF6BF6WH68 1400 aa22.64■■□□□ 1.21
COMMD4-216ENST00000567023 RSPH4AQ5TD94 716 aa22.63■■□□□ 1.21
COMMD4-216ENST00000567023 MAP3K1Q13233 1512 aa22.62■■□□□ 1.21
COMMD4-216ENST00000567023 LRRC9Q6ZRR7 1453 aa22.62■■□□□ 1.21
COMMD4-216ENST00000567023 UHRF1BP1Q6BDS2 1440 aa22.61■■□□□ 1.21
COMMD4-216ENST00000567023 PPP6R1Q9UPN7 881 aa22.58■■□□□ 1.21
COMMD4-216ENST00000567023 ADGBQ8N7X0 1667 aa22.58■■□□□ 1.2
COMMD4-216ENST00000567023 ZMYM3Q14202 1370 aa22.57■■□□□ 1.2
COMMD4-216ENST00000567023 CAMSAP2Q08AD1 1489 aa22.57■■□□□ 1.2
COMMD4-216ENST00000567023 MROH2AA6NES4 1674 aa22.57■■□□□ 1.2
COMMD4-216ENST00000567023 CCDC141Q6ZP82 1450 aa22.56■■□□□ 1.2
COMMD4-216ENST00000567023 DHX29Q7Z478 1369 aaKnown RBP22.55■■□□□ 1.2
COMMD4-216ENST00000567023 FBXO41Q8TF61 875 aa22.55■■□□□ 1.2
COMMD4-216ENST00000567023 NPATQ14207 1427 aa22.55■■□□□ 1.2
COMMD4-216ENST00000567023 KANK4Q5T7N3 995 aaPredicted RBP22.54■■□□□ 1.2
COMMD4-216ENST00000567023 GGT6Q6P531 493 aa22.53■■□□□ 1.2
COMMD4-216ENST00000567023 DMRT2Q9Y5R5 561 aa22.52■■□□□ 1.2
COMMD4-216ENST00000567023 ARHGEF5Q12774 1597 aa22.51■■□□□ 1.19
COMMD4-216ENST00000567023 STRCQ7RTU9 1775 aa22.5■■□□□ 1.19
COMMD4-216ENST00000567023 CLTCQ00610 1675 aaKnown RBP22.49■■□□□ 1.19
COMMD4-216ENST00000567023 TSPY4P0CV99 314 aa22.48■■□□□ 1.19
COMMD4-216ENST00000567023 TSPY10P0CW01 314 aa22.48■■□□□ 1.19
COMMD4-216ENST00000567023 MIA2Q96PC5 1412 aa22.48■■□□□ 1.19
COMMD4-216ENST00000567023 PTPRKQ15262 1439 aa22.45■■□□□ 1.18
COMMD4-216ENST00000567023 MYOM3Q5VTT5 1437 aa22.45■■□□□ 1.18
COMMD4-216ENST00000567023 KIF3BO15066 747 aa22.44■■□□□ 1.18
COMMD4-216ENST00000567023 PTPRTO14522 1441 aa22.42■■□□□ 1.18
COMMD4-216ENST00000567023 CERKQ8TCT0 537 aa22.41■■□□□ 1.18
COMMD4-216ENST00000567023 MAST1Q9Y2H9 1570 aa22.41■■□□□ 1.18
COMMD4-216ENST00000567023 FAM135AQ9P2D6 1515 aa22.41■■□□□ 1.18
COMMD4-216ENST00000567023 NCOA1Q15788 1441 aa22.4■■□□□ 1.18
COMMD4-216ENST00000567023 APLP2Q06481 763 aa22.4■■□□□ 1.18
COMMD4-216ENST00000567023 KDM5DQ9BY66 1539 aa22.36■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms